BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G50720.1 Length=650 Score E Sequences producing significant alignments: (Bits) Value Ahg495134 jgi|Araly1|495134|fgenesh2_kg.8__950__AT5G50720.1 904 0.0 > Ahg495134 jgi|Araly1|495134|fgenesh2_kg.8__950__AT5G50720.1 Length=667 Score = 904 bits (489), Expect = 0.0 Identities = 616/672 (92%), Gaps = 30/672 (4%) Strand=Plus/Plus Query 1 AACAAGAGCGTCCTTTGATTGGTTTTGGATTTTGTTGTGTTCCTCTCAAAATGACAAAAC 60 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AACAAGAGCGTCCTTTGATTGGTTTTGGATTTTGTTGTGTTCCTCTCAAAATGACAAAAT 60 Query 61 TATGGACTTC-TCTCTCTGCTCTTCATTCCCTCGCTGGACCCGTGGTGATGCTGCTCTAT 119 ||||||| || ||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 61 TATGGAC-TCTTCTCTCTGCTCTTCATTCCCTCGCTGGACCCGTGGTGATGCTGCTTTAC 119 Query 120 CCGTTATATGCGTCGGTGATAGCAATAGAGAGCCCATCAAAAGTAGATGACGAGCAATGG 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 CCGTTATATGCGTCGGTGATAGCAATAGAGAGCCCATCAAAAGTAGATGACGAGCAATGG 179 Query 180 CTTGCTTATTGGATTCTCTATTCTTTCCTTACTCTATCAGAACTCATCCTTCAATCTCTC 239 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 180 CTTGCTTATTGGATTCTCTACTCTTTCCTTACTCTATCAGAACTCATCCTTCAATCTCTC 239 Query 240 CTAGAGTGGATACCGATATGGTACACGGCGAAGCTAGTGTTTGTGGCATGGTTGGTTTTA 299 ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| | Sbjct 240 CTAGAGTGGGTACCGATATGGTACACGGCTAAGCTAGTGTTTGTGGCATGGTTGGTTCTG 299 Query 300 CCACAATTTAGAGGAGCTGCTTTTATATACAACAA-AGTCGTGAGGGAACAGTTCAAGAA 358 || ||||||||||| |||||||| |||||||||| | |||||||||||||||||||||| Sbjct 300 CCGCAATTTAGAGGGGCTGCTTTCATATACAACAGGA-TCGTGAGGGAACAGTTCAAGAA 358 Query 359 GTACGGCATCCTCAAACCTAAGGTAGAGCATCAGGCTGAGTGAGTCAAAAAGA-GCAGGG 417 ||| ||||||||||||||||||||||| ||||||||||||||||||||||||| | | || Sbjct 359 GTATGGCATCCTCAAACCTAAGGTAGAACATCAGGCTGAGTGAGTCAAAAAGAAG-ATGG 417 Query 418 GACACAAGAGGGCTTCACTGTTGGGGTCTCCAGTTTCTAATCTCTTTATGCTTTTTCTAT 477 |||| ||||||| ||||||||||||| |||||||||||||||| |||||||||||||| | Sbjct 418 GACAAAAGAGGGGTTCACTGTTGGGGCCTCCAGTTTCTAATCT-TTTATGCTTTTTCTCT 476 Query 478 TTTGTCTTATTTCTCTTTTGATATACGGAAAAATGGGGTT-G-T-T---CT-TAT---T- 526 ||||||||| ||||||||||||||||||||||||||| || | | | || ||| | Sbjct 477 TTTGTCTTAATTCTCTTTTGATATACGGAAAAATGGGTTTAGATGTTGACTATATGAGTT 536 Query 527 ---ATGAGCCT--CT---GCTTGAATGTAT--GAAAAGACCTTTTATTCGACGTTAAACT 576 |||||||| || |||||||||||| ||||||| |||||||||||||||||| | Sbjct 537 CTTATGAGCCTAGCTCCTGCTTGAATGTATATGAAAAGAACTTTTATTCGACGTTAAAAT 596 Query 577 ATTATATTAA-AGATTAAAAAATTGTAAATCTTGTGTTGCCACTTCTTAGTCTTTCAAGA 635 |||||||||| |||||| ||| || ||||||||||||||||||||||||||||||||||| Sbjct 597 ATTATATTAAGAGATTATAAATTT-TAAATCTTGTGTTGCCACTTCTTAGTCTTTCAAGA 655 Query 636 TATCATTGCCTT 647 ||||||||||| Sbjct 656 CATCATTGCCTT 667 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23826823125 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5