BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G50740.3 Length=997 Score E Sequences producing significant alignments: (Bits) Value Ahg495136 jgi|Araly1|495136|fgenesh2_kg.8__952__AT5G50740.1 1441 0.0 Ahg887492 jgi|Araly1|887492|Al_scaffold_0063_5 721 0.0 > Ahg495136 jgi|Araly1|495136|fgenesh2_kg.8__952__AT5G50740.1 Length=982 Score = 1441 bits (780), Expect = 0.0 Identities = 874/920 (95%), Gaps = 4/920 (0%) Strand=Plus/Plus Query 16 GGAAGATAAGAAAATGGAGGagaagaaatctgaagagccacaagcgaaatcagaagataa 75 |||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||| Sbjct 42 GGAAGATAAGAAAATGGAGGAGAAGAAAGCTGAAGAGCCTCAAGTGAAATCAGAAGATAA 101 Query 76 gaaa-c--cagaagaagagaaaaagaaagaacctcaagagaTTGTGCTTAAGATTTTTAT 132 |||| | ||||||||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 102 GAAACCAGCAGAAGAAGAGAAGAAGAAAGAGCCTCAAGAGATTGTGCTTAAGATTTTTAT 161 Query 133 GCATTGTGAAGGTTGTGCTaaaaaaaTCCATAGATGTCTTAAAGGCTTTGAAGGAGTGGA 192 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 162 GCATTGTGAAGGTTGTGCTAAAAAAATCCATAGATGTCTTAAAGGCTTTGAAGGAGTGGA 221 Query 193 GGATGTAACTACTGATTGTAAGACTAGTAAAGTTGTGGTGAAAGGAGAGAAGGCAGATCC 252 |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 222 AGATGTAACTACTGATTGTAAAACTAGTAAAGTTGTGGTGAAAGGAGACAAGGCAGATCC 281 Query 253 ATTAAAAGTGTTGCAAAGATTGCAGAGGAAGAGCCATCGTCAAGTGGAGCTTATCTCACC 312 ||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 282 ATTGAAAGTGTTGCAAAGATTGCAGAGGAAGAGTCACCGTCAAGTGGAGCTTATCTCACC 341 Query 313 GATTCCGGAGCCTAAACCGGTTTCTGATGAACCggagaaaaaggagaaggagaaacctaa 372 ||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||| Sbjct 342 AATTCCGGAGCCTAAACCAGTTTCCGATGTACCGGAGAAAAAGGAGAAGGAGAAACCTAA 401 Query 373 acctgaggagaaaaaagaagaggTAGTGACAGTGGTGCTGAGAGTTCACATGCATTGTGA 432 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 402 ACCTGAGGAGAAAAAAGAAGAGGTAGTGACAGTGGTGCTGAGAGTTCACATGCATTGTGA 461 Query 433 AGCATGTGCCATGGAGATTCAAAAGAGGATCATGAGAATGAAAGGAGTGGAGTCTGTGGA 492 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 462 AGCATGTGCCATGGAGATTCAAAAGAGAATCATGAGAATGAAAGGAGTGGAGTCTGTGGA 521 Query 493 ACCAGATTTTAAAGCATCACAAGTGAGCGTGAAAGGAGTTTTTACGCCGGAAAAGCTAGT 552 ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| Sbjct 522 ACCAGATTTTAAAGCATCACAAGTGAGTGTGAAAGGAGTTTTTACACCGGAAAAGCTAGT 581 Query 553 TGAGTTCATTTACAAGAGAATCGGGAAGCATGCCGCGGTTGTCAAGCAAGATCCGCCGCC 612 |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct 582 TGAGTTCATTTACAAGAGAATCGGGAAGCACGCCGCGGTTGTCAAGCAAGACCCGCCGCC 641 Query 613 AAAACCTCCGGagaaagaaaaagaaacgaaagacaaagacgagaagaaaaaggaagaggg 672 |||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 642 AAAACCACCGGAGAAAGAAAAAGAAACGAAAGACAAAGGTGAGAAGAAAAAAGAAGAGGG 701 Query 673 acagcccaaagaaggaaaagaggccaaggaaaaCGGTGGTGGAGGAGGTGCTAAAGGCGA 732 ||| ||||||||||||||||||||||||||| | ||||| |||||||||||||||||||| Sbjct 702 ACAACCCAAAGAAGGAAAAGAGGCCAAGGAAGATGGTGGAGGAGGAGGTGCTAAAGGCGA 761 Query 733 TGGTGCTGCCGCGGAGGAGGGGAACAAAGTGGTAGACTTGAAGAAGAACGAATATCAGTA 792 |||||||||||||| ||||||||||||||| |||||| | |||||||||||||||||||| Sbjct 762 TGGTGCTGCCGCGGGGGAGGGGAACAAAGTTGTAGACCTAAAGAAGAACGAATATCAGTA 821 Query 793 CCAGCCACCGAGGTACCCCGTGGAGATGTTTGCTTATCCACCGCAGATATTCAGTGATGA 852 ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 822 CCAGCCACCGAGGTATCCGGTGGAGATGTTTGCTTATCCACCGCAGATATTCAGTGATGA 881 Query 853 AAACCCCAATGCTTGTACCATTATATAATAAAATCGTCGGTTTAAGGGGTTGTAGGattt 912 |||||||| |||||||||||||| |||||||| ||||||||||| |||||||||||||| Sbjct 882 GAACCCCAACGCTTGTACCATTATGTAATAAAACCGTCGGTTTAAAGGGTTGTAGGATTT 941 Query 913 gttatttttttactttattt 932 || | |||||| ||||||| Sbjct 942 ATT-TATTTTTATTTTATTT 960 > Ahg887492 jgi|Araly1|887492|Al_scaffold_0063_5 Length=498 Score = 721 bits (390), Expect = 0.0 Identities = 432/452 (96%), Gaps = 3/452 (1%) Strand=Plus/Plus Query 29 ATGGAGGagaagaaatctgaagagccacaagcgaaatcagaagataagaaa-c--cagaa 85 ||||||||||||||| |||||||||| |||| ||||||||||||||||||| | ||||| Sbjct 1 ATGGAGGAGAAGAAAGCTGAAGAGCCCCAAGTGAAATCAGAAGATAAGAAACCAGCAGAA 60 Query 86 gaagagaaaaagaaagaacctcaagagaTTGTGCTTAAGATTTTTATGCATTGTGAAGGT 145 |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct 61 GAAGAGAAGAAGAAAGAGCCTCAAGAGATTGTGCTCAAGATTTTTATGCATTGTGAAGGT 120 Query 146 TGTGCTaaaaaaaTCCATAGATGTCTTAAAGGCTTTGAAGGAGTGGAGGATGTAACTACT 205 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 121 TGTGCTAAAAAAATCCATAGATGTCTTAAAGGCTTTGAAGGAGTGGAAGATGTAACTACA 180 Query 206 GATTGTAAGACTAGTAAAGTTGTGGTGAAAGGAGAGAAGGCAGATCCATTAAAAGTGTTG 265 |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 181 GATTGTAAAACTAGTAAAGTTGTGGTGAAAGGAGAGAAGGCAGATCCATTGAAAGTGTTG 240 Query 266 CAAAGATTGCAGAGGAAGAGCCATCGTCAAGTGGAGCTTATCTCACCGATTCCGGAGCCT 325 |||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||| Sbjct 241 CAAAGATTGCAGAGGAAGAGTCACCGTCAAGTGGAGCTTATCTCACCAATTCCGGAGCCT 300 Query 326 AAACCGGTTTCTGATGAACCggagaaaaaggagaaggagaaacctaaacctgaggagaaa 385 ||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 AAACCAGTTTCCGATGTACCGGAGAAAAAGGAGAAGGAGAAACCTAAACCTGAGGAGAAA 360 Query 386 aaagaagaggTAGTGACAGTGGTGCTGAGAGTTCACATGCATTGTGAAGCATGTGCCATG 445 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 AAAGAAGAGGTAGTGACAGTGGTGCTGAGAGTTCACATGCATTGTGAAGCATGTGCCATG 420 Query 446 GAGATTCAAAAGAGGATCATGAGAATGAAAGG 477 |||||||||||||| ||||||||||||||||| Sbjct 421 GAGATTCAAAAGAGAATCATGAGAATGAAAGG 452 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37055475324 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5