BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50840.2
Length=1480
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495147 jgi|Araly1|495147|fgenesh2_kg.8__963__AT5G50840.2 1831 0.0
> Ahg495147 jgi|Araly1|495147|fgenesh2_kg.8__963__AT5G50840.2
Length=1389
Score = 1831 bits (991), Expect = 0.0
Identities = 1180/1268 (93%), Gaps = 25/1268 (2%)
Strand=Plus/Plus
Query 80 AAAAATGGAGTCACCGCACTCGAATTTGCTCCCTGAAGTCGATTCTTTACCCGATGGATT 139
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAATGGAGTCACCGCACTCGAATCTGCTCCCTGAAGTCGATTCTTTACCCGATGGATT 60
Query 140 CGTCGACGGCGCAACAGAGCCGCCTCTCAATTCTCCCAAGACCCA-G--G--AA--G--- 189
|||||||||||||||||| |||||||||||||| || || ||||| | | || |
Sbjct 61 CGTCGACGGCGCAACAGACCCGCCTCTCAATTCACCAAAAACCCAGGAAGAAAATTGTAT 120
Query 190 ----A-AACAACAAACCATGAAACTGTTGCGATCGAGAAAA-CAGAGAAGCCAAGAACTT 243
| ||||||||||||||| |||||||||||||| |||| |||||||||| |||||||
Sbjct 121 CACAACAACAACAAACCATGACACTGTTGCGATCGA-AAAAGCAGAGAAGCCGAGAACTT 179
Query 244 TTCCGGTTCCGTTGTGTGAAACTGATGGTAATGAAGATGACGAAGTAGCTGACCTAATTC 303
|||| ||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 180 TTCCAGTTCCTTTGTGTGAAACAGATGGTAATGAAGATGACGAAGTAGATGACCTAATTC 239
Query 304 AAGAATC----AATC-AAGCTT-GAGTTAGAGTTCGAGCAGAAAGAAAAAGAAGCTTCTC 357
|||||| || | ||||| ||| |||||| ||||||||| || ||||| | |||
Sbjct 240 GAGAATCAGAGAAGCTTAGCTTAGAGGCAGAGTTAGAGCAGAAACAAGAAGAAACATCTA 299
Query 358 CTCCTATTTCTCAAACATTGTCAGAAGGGTCAACTCAAAATTCAACCTTGTCTAAGGAAA 417
||||| ||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||
Sbjct 300 CTCCTGTTTCTCAAACATTATCAGAAGGGTCAAGTCAAAATCCAACCTTGTCTAAGGAAA 359
Query 418 TGGATTCACTCAAACCCAAAAAACAACAGGAGGTGGTTGAGAGCAAGCGTAAGGGTTCAA 477
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 360 TGGATTCACTCAAACCCAAAAAACAACAGGAGGTGGTTGAGAGCAAGCGTAAGGCTTCAA 419
Query 478 AGAATATGTTCAAATCAGAGAAAGAGTTTTTGGAATTTATGCTCAAGTATCAGCAAGTCC 537
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 420 AGAATATGTTCAAATCAGAGAAAGAGTTTTTGGAATTTATGCTTAAGTATCAGCAAGTTC 479
Query 538 TTTCTGAAAGAGATTCTGCTATTACTGTTCGTGACAAGCTTGAATCACTTTGTAGAGAGT 597
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TCTCTGAAAGAGATTCTGCTATTACTGTTCGTGACAAGCTTGAATCACTTTGTAGAGAGT 539
Query 598 TACAACGTCAGAACAAAATGTTAATGGAAGAATGCAAGAGGGTTTCAACTGAGGGACAGA 657
|||||||||| ||||||||||| |||||||| |||||| |||| || |||||||||||||
Sbjct 540 TACAACGTCAAAACAAAATGTTGATGGAAGAGTGCAAGCGGGTGTCTACTGAGGGACAGA 599
Query 658 CTTTAAGATCGGATTTATCGACAAAGTTCCAGGATGCTA-TAATGGATGTGAGCATTAAG 716
||||||||||||||||||||||||||||||||||||| | ||| |||||| |||||||||
Sbjct 600 CTTTAAGATCGGATTTATCGACAAAGTTCCAGGATGCAATTAA-GGATGTCAGCATTAAG 658
Query 717 TTGGACGAGCAAAAGAATGAAAGCCTCACGCAACTCAAAGAAAATGAGATGTTAAGGACG 776
||||||||||||||| ||||||||||||||||||| |||||||| |||||||| ||||||
Sbjct 659 TTGGACGAGCAAAAGGATGAAAGCCTCACGCAACTAAAAGAAAACGAGATGTTGAGGACG 718
Query 777 AAGTTGAAGCACCTGGCTGATCAATTTATGCTTTCAGAACAACAACATGAGCAAAGGTTG 836
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 719 AAGTTGAAGCACCTGGCTGATCAATTTATGCTTTCAGAACAACAACATGAACAAAGATTG 778
Query 837 AAGCAGAAAACACTTGAGCTACAGATCTCTGCTTTAAAAATTAAACAGCACGAGGAGAAA 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 AAGCAGAAAACACTTGAGCTACAGATCTCTGCTTTAAAAATTAAACAGCACGAGGAGAAA 838
Query 897 CTCATCCATGAACAATCTCAGATGAAAGTTTACGCAGATCAAGTTTCTCAGCTTTTGTCT 956
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 839 CTCATCCATGAACAATCTCAGATGAAAGTTTACGCAGATCAAGTTTCTCAGCTTTTATCT 898
Query 957 ACTGAGAAAAATTTGCGGTTGCAGCTGACTTCTGATGGAGATAAATTCCAGCAGTTCCAG 1016
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 899 ACTGAGAAAAATTTGCGGTTGCAGCTAACTGCTGATGGAGATAAATTCCAGCAGTTCCAG 958
Query 1017 GACGCGTTGGTTAAGAGCAATGAGGTGTTTGAAACATTCAAACAAGAAATCGATAAGATG 1076
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 GACGCATTGGTGAAGAGCAATGAGGTGTTTGAAACATTCAAACAAGAAATCGATAAGATG 1018
Query 1077 TCAAAAGCAATCAAAGAACTCAGAAAAGAAAACGCATTCTTGAAAAACAAAACTGAGAAG 1136
|||||||||||||||||||| || |||||||||||||||||||| | ||||||||||| |
Sbjct 1019 TCAAAAGCAATCAAAGAACTTAGGAAAGAAAACGCATTCTTGAAGAGCAAAACTGAGAGG 1078
Query 1137 TCGGATATCACTCTCATAGAACTCGTCGAAGAGCGTGAAAGATTGAAGAAACTGTTGGAG 1196
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1079 TCGGATATCACTCTCATAGAACTCGTTGAAGAGCGTGAAAGATTGAAGAAGCTGTTGGAG 1138
Query 1197 AAGACAAAGAAACAGAAAGACAAGCTTGAATCACTTTGCAGATCCCTTCAAGCTGAAAGA 1256
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1139 AAGACAAAGAAACAAAAAGACAAGCTTGAATCGCTTTGCAGATCCCTTCAAGCTGAAAGA 1198
Query 1257 AAACAGAAAGAAACTAACAGTACTGATTCTGCTGTTCAACCATGAAACAGAGAGAGACTA 1316
|||||||| |||||||||||| | |||||||| ||||||||||||| |||||||||||||
Sbjct 1199 AAACAGAAGGAAACTAACAGTGCCGATTCTGCAGTTCAACCATGAACCAGAGAGAGACTA 1258
Query 1317 TGAATTCA 1324
||||||||
Sbjct 1259 TGAATTCA 1266
Score = 185 bits (100), Expect = 7e-46
Identities = 119/127 (94%), Gaps = 6/127 (5%)
Strand=Plus/Plus
Query 1356 TTTTGAACTAATTAGCACTTCAGATTACAAAACTACAATTAGA-CTCCAAATTCAC-TTT 1413
|||||||||||||||||||| |||||||||||||||||||||| || ||||||||| |||
Sbjct 1267 TTTTGAACTAATTAGCACTTGAGATTACAAAACTACAATTAGACCT-CAAATTCACTTTT 1325
Query 1414 AAAATGTAGAAACATATCACATCATATTGATTCTGCTCTTTTGCGAGCTAAGTCCATTTT 1473
|||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1326 AAAATGTAGAGAC--ATCACATCATATTGATTCTGCTCTTT-GCGAGCTAAGTCCATTTT 1382
Query 1474 ATCTCAC 1480
|||||||
Sbjct 1383 ATCTCAC 1389
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55383216230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5