BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50860.1
Length=2114
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495150 jgi|Araly1|495150|fgenesh2_kg.8__966__AT5G50860.1 3203 0.0
Ahg952205 jgi|Araly1|952205|scaffold_45700003.1 427 1e-118
Ahg351649 jgi|Araly1|351649|fgenesh1_pg.C_scaffold_6002242 414 1e-114
> Ahg495150 jgi|Araly1|495150|fgenesh2_kg.8__966__AT5G50860.1
Length=2125
Score = 3203 bits (1734), Expect = 0.0
Identities = 2013/2141 (94%), Gaps = 46/2141 (2%)
Strand=Plus/Plus
Query 3 CGATAATGTTAAGCTAAAGAGAGAAAGC-TTCACCGATTCAAAATCATTTAGCCGATGGG 61
|||||||||||||||||||| ||| ||| |||||||| | || || |||||||
Sbjct 1 CGATAATGTTAAGCTAAAGACAGAGAGCTTTCACCGA-T-----TC----AGTCGATGGG 50
Query 62 ATGCGTTTTATGCAAAGAATCCACCGGAGACAAACGGAAACACAATAATCCCGATGAACC 121
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 51 ATGCGTTTTATGCAAAGAATCCACCGGAGACAGACGGAAACATAATAATCCCGATGAACC 110
Query 122 TCCTCCGGCAGACCTCCGTAATACGGAGGATTTACCTTCTTCTTCTTCAACCACCACCGC 181
||||||| ||||| |||||| | || |||||||||||||||||||||||||||||| |
Sbjct 111 TCCTCCGTTAGACCACCGTAAGGCAGATGATTTACCTTCTTCTTCTTCAACCACCACCAC 170
Query 182 CGCC---ATTTCTGT--C-GA---AATCGgaga---ga-agaagaagaaagatttagatt 228
|||| ||||||| | || | || || | || |||||||||| | |||||| |
Sbjct 171 CGCCGTTGTTTCTGTACCGGAGGTAGTC-GAAATCGGAGAGAAGAAGAAGGGTTTAGACT 229
Query 229 cgattcagattcagccggagagaagaaCATGGCACACTGGCGACTTCTCCGCCGGCTCTT 288
|||||||||||||||| | | ||||||||||||||||||||||||||||||||||||
Sbjct 230 CGATTCAGATTCAGCC--ACCG-CGAACATGGCACACTGGCGACTTCTCCGCCGGCTCTT 286
Query 289 CTCGCCGTCCGGGGATGAGTCTCCGTACGCCGGAAGGATGGCCACCTTGGCTTATTGCTG 348
||||||| ||||||||||| |||||||||||||||||||||||||| ||||| ||| |||
Sbjct 287 CTCGCCGGCCGGGGATGAGCCTCCGTACGCCGGAAGGATGGCCACCGTGGCTAATTTCTG 346
Query 349 CTTGTGGCGATTCGATCAAAGACTTAACACCTCGCAGAGCTACCACATACGAAAAGCTCG 408
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 347 CTTGCGGCGATTCGATCAAAGACTTAACACCTCGCAGAGCCACCACATACGAAAAGCTCG 406
Query 409 AGAAGATTGGGCAAGGAACGTATAGCAATGTGTACAAGGCGAAAGATTTATTGAGTGGGA 468
|||||||||| |||||||| ||||||||||||||||||||||||||| |||||| |||||
Sbjct 407 AGAAGATTGGACAAGGAACTTATAGCAATGTGTACAAGGCGAAAGATCTATTGACTGGGA 466
Query 469 AGATTGTAGCTTTGAAGAAAGTTAGGTTTGATAATTTGGAAGCTGAGAGTGTTAAATTTA 528
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 467 AGATTGTAGCTTTGAAGAAAGTTAGGTTTGATAATTTGGAAGCAGAGAGTGTTAAATTTA 526
Query 529 TGGCTAGAGAGATTCTTGTGTTACGACGGCTTAATCATCCTAATGTTATTAAGCTTCAAG 588
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 527 TGGCTAGAGAGATTCTTGTGTTGCGACGGCTTAATCATCCTAATGTTATTAAGCTTGAAG 586
Query 589 GTTTGGTTACTTCACGGGTTTCCTGTAGTCTCTACCTTGTTTTTGAGTATATGGAGCATG 648
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 587 GTTTGGTTACTTCGCGGGTTTCGTGTAGTCTCTACCTTGTTTTTGAGTATATGGAGCATG 646
Query 649 ATCTTTCTGGTCTTGCTGCTACCCAAGG-TCTCAAGTTTGATCTTCCTCAGGTTAAATGC 707
|||||||||||||| ||||||| | ||| |||||||||||||||||||||||||||||||
Sbjct 647 ATCTTTCTGGTCTTTCTGCTACTC-AGGCTCTCAAGTTTGATCTTCCTCAGGTTAAATGC 705
Query 708 TTTATGAAGCAGCTACTATCTGGATTGGAGCATTGCCATAGTCGAGGAGTATTACATCGG 767
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 706 TTTATGAAGCAGCTACTATCTGGATTGGAGCATTGCCATAGTCGAGGAGTCTTACATCGG 765
Query 768 GATATCAAAGGTTCTAATCTTCTTATAGATAATGATGGAATACTGAAGATTGCTGATTTC 827
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 766 GATATCAAAGGTTCTAATCTTCTTATAGATAATGATGGAATACTGAAGATTGCTGATTTT 825
Query 828 GGGTTGGCTACGTTTTATGACCCAAAGCAAAAGCAAACAATGACTAGTCGTGTTGTCACA 887
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 826 GGGTTGGCCACGTTTTATGACCCGAAGCAAAAGCAAACAATGACTAGTCGTGTTGTCACG 885
Query 888 CTTTGGTACCGTCCTCCCGAGCTTCTTCTTGGAGCTACCAGTTATGGAACTGGTGTTGAT 947
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 886 CTTTGGTACCGTCCTCCCGAGCTTCTTCTTGGAGCTACCAATTATGGAACTGGTGTTGAT 945
Query 948 CTTTGGAGTGCTGGTTGTATTATGGCTGAGTTACTTGCTGGCAAGCCCGTTATGCCGGGA 1007
||||||||||| |||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 946 CTTTGGAGTGCCGGTTGTATTATGGCAGAATTACTTGCTGGCAAGCCCGTTATGCCAGGA 1005
Query 1008 AGAACCGAGGTCGAACAACTTCATAAGATATTCAAATTATGTGGCTCCCCTTCAGATTCG 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1006 AGAACCGAGGTCGAACAACTTCATAAGATATTCAAATTATGTGGCTCCCCTTCAGATTCG 1065
Query 1068 TACTGGAAGAAGTACAGACTGCCAAACGCAACTCTTTTTAAGCCGCAACATCCGTACAAA 1127
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1066 TACTGGAAGAAGTACAAACTGCCAAACGCAACTCTTTTTAAGCCGCAACATCCGTACAAG 1125
Query 1128 CGTTGTGTGGCTGAAGCCTTCAATGGTTTCACTCCATCCTCTGTGCATCTAGTTGAGACA 1187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1126 CGTTGTGTGGCTGAAGCCTTCAATGGTTTCACTCCATCCTCTGTGCATCTAGTTGAGACA 1185
Query 1188 CTTCTCACTATAGACCCTGCTGATCGAGGAACTTCTACCTCGGCATTGAATAGTGAATTC 1247
||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1186 CTTCTTGCTATAGACCCTGCTGATCGAGGAACTTCTACCTCGGCATTGAGTAGTGAATTC 1245
Query 1248 TTTACTACTGAACCGTTACCTTGTGATCCTTCAAGTTTACCAAAGTATCCACCTTCCAAA 1307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1246 TTTACTACTGAACCGTTACCTTGTGATCCTTCAAGTTTACCAAAGTATCCACCTTCCAAA 1305
Query 1308 GAACTGAATGTAAAGCTGAGGGACGAAGAGTTAAGAAGGCAAAAGGGTCTTGCTGGAAAA 1367
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1306 GAACTGAATGTAAAGCTGAGGGACGAAGAGGCAAGAAGGCAAAAGGGTCTTGCTGGAAAA 1365
Query 1368 GGTAGTGGTATTGATGGAGCTAGAAGAATAAGGTATCGAGGGGATCGCACTGGGCGAGCT 1427
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1366 GGTAGTGGTATTGATGGAGCTAGAAGAATAAGGTATCGTGGGGATCGCACTGGGCGAGCT 1425
Query 1428 ATTCCAGCCCCAGAAGCTAATGCCGAGAGTCAAGCAAACTTAGATAGATGGAGATCGATA 1487
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 1426 ATTCCAGCCCCAGAAGCTAATGCCGAGAGCCAAGCAAACTTAGATAGATGGAGAGCGATA 1485
Query 1488 TCACAAACAAATGGAAAGAGCAAGAGTGAGAAGTTTCCGCCTCCTCACCAGGACGGTGCA 1547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1486 TCACAAACAAATGGAAAGAGCAAGAGTGAGAAGTTTCCGCCTCCTCACCAGGACGGTGCA 1545
Query 1548 GTTGGGTACCCATTGGAAGATCTA-TCAAAGAAAACCTCAGTATTTGGTGCAAAGACTGA 1606
|||||||||||||||||||||| | |||||||||| ||||||||||||||||||| ||||
Sbjct 1546 GTTGGGTACCCATTGGAAGATC-AGTCAAAGAAAAGCTCAGTATTTGGTGCAAAGGCTGA 1604
Query 1607 GACTTCTTTTGGGTTATCGAGATCATTAAAGTCTGGGGAAGGGACATCAATGAGAAAGAT 1666
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1605 GACTTCTTTGGGGTTATCAAGATCATTAAAGTCTGGGGAAGGGACATCAATGAGAAAGAT 1664
Query 1667 TTCAAACAAAGACGGGGCTCGTGGGGCTTCTTCTAGAAAGTACATATGGGGACTTAAACC 1726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1665 TTCAAACAAAGACGGGGCTCGTGGGGCTTCTTCTAGAAAGTACATATGGGGACTTAAACC 1724
Query 1727 TCCTCCAGCACTCGGGCTATCGATGGACTTACTTTTCAGGAGCAGATCAGAAGTTTTTGG 1786
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1725 TCCTCCAGCGCTCGGGCTATCGATGGACTTACTTTTCAGGAGCAGATCAGAAGTTTTTGG 1784
Query 1787 GATCCGGAGATAGGAAAGATGATTGAGAAATGAGTTGGAGTTATATTAGTGCATCAAAAT 1846
||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1785 GATCCGGAGATAGGATAGATGATTGAGAAATGAGTTGGAGTTGTATTAGTGCATGAAAAT 1844
Query 1847 AAGAGATTGCTTCCGTTTCAAGAGAGAATGGTTGAAGGAGTTCAAATTCTTTGTAGCAGA 1906
||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1845 AAGAGATTGCTTCCGTTTCGAGAGAGATTGGTTGAAGGATTTCAAATTCTTTGTAGCAGA 1904
Query 1907 ATAGAG------TGCACAAATAGAAAATGTGATTTTGACTCTGATGTAAAAACATAATTC 1960
|||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 1905 ATAGAGAGAGAGTGCACAAATGGAAAATGTGGTTTTGACTCTGATGTAAAAACATAATTC 1964
Query 1961 AGGTAGCTTTAGAATCCTACTTTTAAATTGTATAGTT-TT-T---G---AAATGGATTTT 2012
||||||||||||||||||||||||||||||||||||| || | | |||||||||||
Sbjct 1965 AGGTAGCTTTAGAATCCTACTTTTAAATTGTATAGTTGTTGTCTTGTTGAAATGGATTTT 2024
Query 2013 GAGGCTTCCAAGATTGGTCTTGTGATAAGAGTGTTGCTAAAAATTGTCGTGAATAGATGT 2072
|||||||| |||||| ||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 2025 GAGGCTTCAAAGATTAGTCTTGTGATAAGTGTGTTGCAAAAAATTGTCGTGAATAGATGT 2084
Query 2073 TCAAACATTTTGATTGCTGCTTCAAATATTGGAACTTGTTT 2113
|||||||||| |||||||||| ||||||||| |||||||
Sbjct 2085 GCAAACATTTTCATTGCTGCTTTAAATATTGGGTCTTGTTT 2125
> Ahg952205 jgi|Araly1|952205|scaffold_45700003.1
Length=334
Score = 427 bits (231), Expect = 1e-118
Identities = 273/293 (93%), Gaps = 4/293 (1%)
Strand=Plus/Plus
Query 283 GCTCTTCTCGCCGTCCGGGGATGAGTCTCCGTACGCCGGAAGGATGGCCACCTTGGCTTA 342
||||||||||||| ||||||||||| ||||||| |||||||||||||||||| ||||| |
Sbjct 1 GCTCTTCTCGCCGGCCGGGGATGAGCCTCCGTATGCCGGAAGGATGGCCACCGTGGCTGA 60
Query 343 TTGCTGCTTGTGGCGATTCGATCAAAGACTTAACACCTCGCAGAGCTACCACATACGAAA 402
|| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 61 TTTCTGCTTGCGGCGATTCGATCAAAGACTTAACACCTCGCAGAGCCACCACATACGAAA 120
Query 403 AGCTCGAGAAGATTGGGCAAGGAACGTATAGCAATGTGTACAAGGCGAAAGATTTATTGA 462
||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||
Sbjct 121 AGCTCGAGAAGATTGGGCAAGGAACTTATAGTAATGTGTACAAGGCGAAAAATTTATTGA 180
Query 463 GTGGGAAGATTGTAGCTTTGAAGAAAGTTAGGTTTGATAATTTGGAAGCTGAGAGTGTTA 522
|||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 181 CTGGGAAGATTGTAGTTTTGAAGAAAGTTAGGTTTGATAATTTGGAAGCAGAGAGTG--A 238
Query 523 AATTTATGGCTAGAGAGATTCTTGTGTTACGACGGCTTAATCATCCTAATGTT 575
|| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 239 --TTCATGGCTAGAGAGATTCTTGTGTTGCGACGGCTTAATCATCCTAATGTT 289
> Ahg351649 jgi|Araly1|351649|fgenesh1_pg.C_scaffold_6002242
Length=633
Score = 414 bits (224), Expect = 1e-114
Identities = 277/302 (92%), Gaps = 6/302 (2%)
Strand=Plus/Plus
Query 192 GTCGAAATCGgagagaagaagaagaaagatttagattcgattcagattcagccggagaga 251
||||||||||||||| | ||||||| | |||||| ||||||||||||||||| | |
Sbjct 70 GTCGAAATCGGAGAG--G-AGAAGAAGGGTTTAGACTCGATTCAGATTCAGCC-G-CCG- 123
Query 252 agaaCATGGCACACTGGCGACTTCTCCGCCGGCTCTTCTCGCCGTCCGGGGATGAGTCTC 311
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||
Sbjct 124 AGAACATGGCACACTGGCGATTTCTCCGCCGGCTCTTCTCGCCGGCCGGGGATGAGCCTC 183
Query 312 CGTACGCCGGAAGGATGGCCACCTTGGCTTATTGCTGCTTGTGGCGATTCGATCAAAGAC 371
|||| |||||||||||||||||| ||||| ||| ||||||| ||||||||||||||||||
Sbjct 184 CGTATGCCGGAAGGATGGCCACCGTGGCTGATTTCTGCTTGCGGCGATTCGATCAAAGAC 243
Query 372 TTAACACCTCGCAGAGCTACCACATACGAAAAGCTCGAGAAGATTGGGCAAGGAACGTAT 431
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 244 TTAACACCTCGCAGAGCCACCACATACGAAAAGCTCGAGAAGATTGGGCAAGGAACTTAT 303
Query 432 AGCAATGTGTACAAGGCGAAAGATTTATTGAGTGGGAAGATTGTAGCTTTGAAGAAAGTT 491
|| |||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||
Sbjct 304 AGTAATGTGTACAAGGCGAAAAATTTATTGACTGGGAAGATTGTAGTTTTGAAGAAAGTT 363
Query 492 AG 493
||
Sbjct 364 AG 365
Score = 145 bits (78), Expect = 2e-33
Identities = 84/87 (97%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 614 TAGTCTCTACCTTGTTTTTGAGTATATGGAGCATGATCTTTCTGGTCTTGCTGCTACCCA 673
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 363 TAGTCTCTACCTTGTTTTTGAGTATATGGAGCATGATCTTTCTGGTCTTTCTGCTACTCA 422
Query 674 AGGTCTCAAGTTTGATCTTCCTCAGGT 700
||||||||||||||||||||| |||||
Sbjct 423 AGGTCTCAAGTTTGATCTTCCACAGGT 449
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79532431560
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5