BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50920.1
Length=3189
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495156 jgi|Araly1|495156|fgenesh2_kg.8__972__AT5G50920.1 4992 0.0
Ahg485240 jgi|Araly1|485240|fgenesh2_kg.5__1232__AT3G48870.1 1940 0.0
> Ahg495156 jgi|Araly1|495156|fgenesh2_kg.8__972__AT5G50920.1
Length=3143
Score = 4992 bits (2703), Expect = 0.0
Identities = 3008/3153 (95%), Gaps = 29/3153 (1%)
Strand=Plus/Plus
Query 13 AGAGAGAGAGATAAGGGAGGGTG-AA-AAAATAAGCACACACCA--TTATCCATCTGttt 68
||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||
Sbjct 1 AGAGAGAGAGATAAGGGAGGGTGAAACAAAATAAGCACACACCACCATATCCATCTGTTT 60
Query 69 ttttttttc--atc-tctctctctctctt-ttcttcttcgattcgtgtttt-ctccattt 123
||||||||| || | |||||||||||| |||||||||||||||| |||| ||||||||
Sbjct 61 TTTTTTTTCTTTTCATTTCTCTCTCTCTTCTTCTTCTTCGATTCGTTTTTTCCTCCATTT 120
Query 124 cattctctGTTACGCTTCAATCGAACTCGGAAGTCATGGCTATGGCCACAAGGGTGTTGG 183
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 121 GATCCTCTGTTACGCTTCAATCGAACTCTGAAGTCATGGCTATGGCCACAAGGGTGCTGG 180
Query 184 CTCAATCGACTCCACCGTCTTTAGCTTGTTACCAGAGGAATGTTCCTTCACGTGGATCTG 243
||||||| |||||||| ||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 181 CTCAATCTACTCCACCATCTTTGGCTTGTTACCAGAGGAATGTTCCCTCACGTGGATCTG 240
Query 244 GAAGATCGAGAAGATCGGTGAAAATGATGTGTAGTCAGTTACAAGTGTCTGGTTTAAGAA 303
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 241 GAAGATCGAGAAGATCGGTGAAAATGATGTGTAGTCAGTTACAAGTTTCTGGCTTAAGAA 300
Query 304 TGCAAGGGTTTATGGGATTACGTGGTAACAATGCTTTAGACACTCTTGGAAAAAGTCGTC 363
||||||| ||||||||||||||||| |||||||||||||||||||| ||||||| ||||
Sbjct 301 TGCAAGGATTTATGGGATTACGTGGGAACAATGCTTTAGACACTCTAGGAAAAAACCGTC 360
Query 364 AAGATTTTCATTCGAAGGTGCGACAGGCAATGAATGTGCCCAAGGGGAAAGCTAGCCGGT 423
||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 361 AAGATTTCCATTCGAAGGTGCGGCAGGCGATGAATGTGCCCAAGGGGAAAGCTAGCCGGT 420
Query 424 TTACGGTGAAAGCAATGTTTGAAAGATTTACGGAGAAAGCTATCAAAGTTATTATGCTTG 483
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 421 TTACGGTGAAAGCAATGTTTGAAAGATTTACTGAAAAAGCTATCAAAGTTATTATGCTTG 480
Query 484 CTCAGGAGGAAGCTAGAAGACTAGGCCACAATTTTGTGGGAACCGAACAAATTCTTCTTG 543
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 481 CTCAGGAGGAAGCTAGAAGACTAGGCCACAATTTTGTGGGAACCGAACAAATTCTTCTAG 540
Query 544 GTCTTATTGGTGAGGGTACTGGAATCGCTGCTAAAGTTTTGAAATCCATGGGGATTAA-C 602
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 541 GTCTCATTGGTGAGGGTACTGGAATTGCTGCTAAAGTTTTGAAATCCATGGGGATTAACC 600
Query 603 TTAAAAGATGCACGTGTGGAGGTTGAGAAGATTATTGGAAGGGGAAGTGGCTTTGTTGCT 662
|| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 601 TT-AAAGATGCACGTGTGGAGGTAGAGAAGATTATTGGAAGGGGCAGTGGCTTTGTTGCT 659
Query 663 GTTGAGATCCCATTCACTCCTCGTGCCAAGCGTGTTCTTGAACTCTCTCTTGAGGAAGCT 722
|||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||
Sbjct 660 GTTGAGATCCCATTCACTCCTCGTGCAAAGCGTGTTCTTGAACTCTCACTGGAGGAAGCT 719
Query 723 CGCCAACTTGGTCACAATTACATTGGATCCGAGCACCTT-TTGCTTGGGTTGCTACGTGA 781
||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||
Sbjct 720 CGCCAACTTGGTCACAATTACATTGGATCCGAGCACCTTCTT-CTTGGATTGCTACGTGA 778
Query 782 AGGTGAAGGAGTTGCAGCTCGAGTCCTTGAGAATTTAGGTGCAGATCCTAGTAATATTCG 841
||||||||| ||||||||||| ||||| || |||||||||||||||||||||||||||||
Sbjct 779 AGGTGAAGGTGTTGCAGCTCGTGTCCTGGAAAATTTAGGTGCAGATCCTAGTAATATTCG 838
Query 842 CACTCAGGTGATACGCATGGTGGGTGAGAACAATGAAGTAACTGCTAATGTTGGGGGAGG 901
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 839 CACTCAGGTGATACGCATGGTGGGTGAGAACAATGAGGTAACTGCTAATGTTGGGGGAGG 898
Query 902 AAGCAGCAGCAATAAGATGCCAACTCTTGAAGAGTACGGAACAAACTTGACGAAACTGGC 961
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 899 AAGCAGCAGCAATAAGATGCCAACTCTTGAAGAGTACGGGACAAACTTGACGAAACTGGC 958
Query 962 TGAGGAGGGTAAATTGGACCCAGTTGTTGGAAGGCAGCCGCAGATAGAACGTGTGGTGCA 1021
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 959 TGAGGAGGGTAAATTGGACCCAGTTGTTGGAAGGCAGCCACAGATAGAACGTGTGGTACA 1018
Query 1022 AATTCTTGGCAGGAGAACCAAGAACAACCCTTGTCTTATTGGAGAACCTGGTGTTGGTAA 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 AATTCTTGGCAGGAGAACCAAGAACAACCCTTGTCTTATTGGAGAACCTGGTGTTGGTAA 1078
Query 1082 GACAGCTATTGCTGAAGGACTTGCACAGCGTATTGCCAGTGGCGATGTCCCTGAAACTAT 1141
|||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||| ||
Sbjct 1079 GACAGCTATTGCTGAAGGACTTGCGCAGCGTATTGCCAGTGGAGATGTTCCTGAAACCAT 1138
Query 1142 TGAAGGGAAGAAGGTTATAACACTCGACATGGGTCTTCTAGTTGCTGGAACAAAATATCG 1201
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1139 TGAAGGGAAGAAGGTTATAACACTTGACATGGGTCTTCTAGTTGCTGGAACAAAATATCG 1198
Query 1202 TGGAGAGTTTGAAGAGAGATTGAAA-AAGCTTATGGAGGAAATTAGACAGAGCGATGAGA 1260
||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||| ||||
Sbjct 1199 TGGAGAGTTTGAAGAGAGATT-AAAGAAGCTTATGGAGGAAATAAGACAGAGCGACGAGA 1257
Query 1261 TAATCTTATTTATCGACGAAGTGCATACTTTGATTGGGGCTGGAGCAGCAGAAGGTGCAA 1320
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1258 TAATCTTATTTATCGATGAAGTGCATACTTTGATTGGGGCTGGAGCAGCGGAAGGTGCAA 1317
Query 1321 TTGACGCAGCTAACATTTTAAAACCAGCTCTCGCTAGAGGTGAATTGCAGTGCATTGGAG 1380
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 TTGATGCAGCTAACATTTTAAAACCAGCTCTCGCTAGAGGTGAATTGCAGTGCATTGGAG 1377
Query 1381 CGACAACATTAGATGAATACCGAAAGCACATTGAGAAAGACCCTGCCTTGGAAAGAAGAT 1440
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1378 CGACAACATTAGATGAATACCGAAAGCACATTGAGAAAGACCCTGCGTTGGAAAGAAGAT 1437
Query 1441 TCCAGCCAGTGAAAGTACCTGAACCTACCGTGGATGAAACTATTCAGATCCTTAAGGGTC 1500
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1438 TCCAGCCGGTGAAAGTACCTGAACCTACCGTGGATGAAACTATTCAGATTCTTAAGGGTC 1497
Query 1501 TGCGAGAGCGATATGAAATTCACCACAAGCTTCGTTACACAGACGAATCTTTAGTAGCAG 1560
|||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1498 TGCGAGAGAGATATGAAATTCACCACAAGCTTCGTTACACTGACGATTCTTTAGTAGCAG 1557
Query 1561 CTGCACAGTTGTCATACCAGTATATAAGTGATCGTTTCCTTCCTGACAAGGCAATTGACT 1620
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1558 CTGCACAGTTGTCATACCAGTATATTAGTGATCGTTTCCTTCCTGACAAGGCAATTGACT 1617
Query 1621 TGATTGATGAAGCTGGTTCTCGGGTTCGACTTCGTCATGCACAGGTCCCTGAGGAAGCTA 1680
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 TGATCGATGAAGCTGGTTCTCGGGTTCGACTTCGTCATGCACAGGTCCCTGAGGAAGCTA 1677
Query 1681 GGGAGCTTGAGAAGGAGCTTAGGCAGATAACAAAGGAGAAGAATGAAGCTGTCCGTGGCC 1740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1678 GGGAGCTTGAGAAGGAGCTTAGGCAGATAACAAAGGAGAAGAATGAAGCTGTCCGTGGCC 1737
Query 1741 AGGACTTTGAGAAGGCTGGGACACTTCGGGATAGAGAAATTGAACTCAGAGCTGAGGTAT 1800
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1738 AAGACTTTGAGAAGGCTGGGACACTTCGGGATAGAGAAATTGAACTCAGAGCTGAGGTAT 1797
Query 1801 CTGCAATCCAAGCGAAAGGCAAGGAGATGAGCAAAGCAGAGAGTGAGACCGGTGAGGAAG 1860
|||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1798 CTGCTATCCAAGCGAAAGGTAAGGAGATGAGCAAAGCAGAGAGTGAGACTGGTGAGGAAG 1857
Query 1861 GCCCTATGGTCACGGAGTCAGACATCCAACACATTGTGTCTTCATGGACTGGTATTCCTG 1920
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1858 GTCCTATGGTCACGGAGTCAGACATCCAACACATTGTATCTTCATGGACTGGTATTCCCG 1917
Query 1921 TTGAGAAAGTATCAACCGATGAGTCTGACCGTCTCCTCAAGATGGAAGAAACCCTCCACA 1980
| |||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1918 TAGAGAAAGTATCAACTGATGAGTCTGATCGCCTCCTCAAGATGGAAGAAACCCTCCACA 1977
Query 1981 AACGTATCATAGGCCAAGACGAAGCTGTGAAAGCCATAAGCCGAGCCATTCGCCGTGCAC 2040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1978 AACGTATCATAGGCCAAGACGAAGCTGTGAAAGCCATAAGCCGAGCCATTCGCCGTGCAC 2037
Query 2041 GTGTTGGACTCAAGAATCCTAACCGTCCAATCGCTAGTTTCATATTCTCGGGTCCAACCG 2100
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2038 GTGTTGGACTCAAGAACCCTAACCGTCCAATAGCTAGTTTCATATTCTCGGGTCCAACCG 2097
Query 2101 GTGTTGGGAAATCTGAGCTTGCCAAAGCTTTAGCAGCTTACTACTTCGGTTCCGAAGAAG 2160
||||||||||||| |||||||||||| |||| ||||||||||||||||| || || ||||
Sbjct 2098 GTGTTGGGAAATCCGAGCTTGCCAAAACTTTGGCAGCTTACTACTTCGGCTCTGAGGAAG 2157
Query 2161 CCATGATTCGTCTAGATATGAGTGAGTTCATGGAGAGGCACACTGTCTCCAAACTCATCG 2220
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2158 CCATGATTCGTCTAGATATGAGTGAGTTCATGGAGAGGCACACTGTCTCCAAACTCATTG 2217
Query 2221 GTTCACCTCCTGGATATGTCGGATACACCGAAGGAGGTCAGTTAACAGAAGCGGTTAGAC 2280
| |||||||||||||| ||||| ||||| |||||||||||| |||||||||| ||||| |
Sbjct 2218 GATCACCTCCTGGATACGTCGGGTACACAGAAGGAGGTCAGCTAACAGAAGCAGTTAGGC 2277
Query 2281 GTCGCCCTTACACCGTCGTTCTATTCGATGAGATTGAAAAAGCCCATCCAGATGTTTTCA 2340
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 2278 GTCGCCCTTACACCGTCGTTCTATTCGACGAGATCGAAAAAGCCCATCCAGATGTTTTCA 2337
Query 2341 ACATGATGCTTCAAATCCTTGAAGATGGTAGATTAACAGACAGCAAAGGAAGAACAGTTG 2400
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2338 ACATGATGCTTCAAATCCTTGAAGACGGTAGATTAACAGACAGCAAAGGAAGAACAGTTG 2397
Query 2401 ACTTCAAAAACACACTTCTCATCATGACATCAAACGTCGGAAGCAGCGTGATTGAGAAAG 2460
||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||
Sbjct 2398 ACTTCAAAAACACACTTCTCATCATGACATCAAACGTTGGAAGCAGCGTGATCGAAAAAG 2457
Query 2461 GAGGAAGACGTATCGGATTCGACTTAGACTACGACGAGAAAGACAGCAGTTACAACAGAA 2520
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2458 GAGGAAGACGTATCGGGTTCGACTTAGATTACGACGAGAAAGACAGCAGTTACAACAGAA 2517
Query 2521 TCAAGAGCCTTGTAACAGAGGAGCTGAAACAATACTTCAGACCCGAGTTCCTAAACAGGC 2580
||||||||||||| || |||||||||||||| |||||||||||||||||| | |||||||
Sbjct 2518 TCAAGAGCCTTGTGACCGAGGAGCTGAAACAGTACTTCAGACCCGAGTTCTTGAACAGGC 2577
Query 2581 TAGACGAGATGATTGTGTTCAGACAGCTAACAAAGCTGGAAGTGAAAGAAATTGCTGACA 2640
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2578 TAGACGAGATGATTGTGTTCAGACAGCTAACAAAACTGGAAGTGAAAGAAATTGCTGACA 2637
Query 2641 TACTGTTGAAGGAAGTGTTCGAGAGGTTGAAGAAGAAAGAGATTGAGCTTCAGGTGACCG 2700
|||||||||||||||||||||||||||| |||||||| ||||| ||||| |||||||| |
Sbjct 2638 TACTGTTGAAGGAAGTGTTCGAGAGGTTAAAGAAGAAGGAGATCGAGCTCCAGGTGACTG 2697
Query 2701 AAAGATTCAAAGAGAGAGTAGTAGACGAAGGTTATAACCCGAGCTATGGAGCAAGACCGT 2760
| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2698 AGAGGTTCAAAGAGAGAGTAGTAGACGAAGGTTATAACCCGAGCTATGGAGCGAGACCGT 2757
Query 2761 TGAGAAGAGCCATCATGAGGCTTTTAGAGGATAGTATGGCAGAGAAGATGCTTGCGAGAG 2820
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2758 TGAGAAGAGCCATCATGAGGCTTTTAGAGGATAGTATGGCAGAGAAAATGCTTGCGAGAG 2817
Query 2821 AGATCAAAGAAGGAGACTCGGTGATTGTGGACGTTGACGCTGAAGGTAACGTCACGGTGC 2880
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2818 AGATTAAAGAAGGAGACTCGGTGATTGTGGACGTTGACGCTGAAGGTAACGTCACGGTGC 2877
Query 2881 TAAATGGTGGAAGTGGCACTCCAACTACTTCCTTGGAGGAGCAGGAAGATTCTCTCCCTG 2940
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 2878 TAAATGGTGGAAGTGGCACTCCAACTACTTCCTTGGAAGAGCAGGAAGATTCTCTCCCCG 2937
Query 2941 TTGCTTAAATaaaaaaa-G-CAAAGTGCGTGCGTTTCTCTCTTCTTTTGCTTTGGCCCTT 2998
|||||| |||||||||| | |||||||||| || |||| | ||||||||||||||| |
Sbjct 2938 TTGCTTGAATAAAAAAAAGGCAAAGTGCGT---TT-CTCT-T-CTTTTGCTTTGGCCCCT 2991
Query 2999 AAATGAATTATGGCAAGAGAAGGTTATGAATTGAGATACATGGGGGCTTTCTTAATATAC 3058
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2992 AAATGAATTATGGCAAGAGAAGGTTATGAATTGAGATATTTGGGGGCTTTCTTAATATAC 3051
Query 3059 ATTTTCTAAATATATGAAAAA--TGTAATGTATAGATGACATTGTGTAGCTTCTT-TTT- 3114
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 3052 ATTTTCTAAATATATGAAAAAAATGTAATGTATAGATGACATTGTGTAGCTTCTTCTTTT 3111
Query 3115 CTTCCATGCTTTTTAAGGACTT-GTCTTTGGTG 3146
|||||||||||||||||||||| | ||||||||
Sbjct 3112 CTTCCATGCTTTTTAAGGACTTTG-CTTTGGTG 3143
> Ahg485240 jgi|Araly1|485240|fgenesh2_kg.5__1232__AT3G48870.1
Length=3106
Score = 1940 bits (1050), Expect = 0.0
Identities = 2018/2480 (81%), Gaps = 87/2480 (4%)
Strand=Plus/Plus
Query 432 AAAGCAATGTTTGAAAGATTTACGGAGAAAGCTATCAAAGTTATTATGCTTG-CTCAGGA 490
|||||||||||||| | ||||| |||||||| || || || || |||| || |||| ||
Sbjct 429 AAAGCAATGTTTGAGCGTTTTACCGAGAAAGCAATTAAGGTCATAATGC-TGTCTCAAGA 487
Query 491 GGAAGCTAGAAGACTAGGCCACAATTTTG-TGGGAACCGAACAAATTCTTCTT-GGTCTT 548
||||||| | ||||| ||||| || |||| |||| || || ||||| | | || |||||
Sbjct 488 GGAAGCTCGTAGACTTGGCCATAACTTTGTTGGG-ACTGAGCAAATAC-TGTTGGGTCTA 545
Query 549 ATTGGTG-AGGGTACTGGAATCGCTGCTAAAGTT-TTGAAATCCATGGGGATTAA-CTTA 605
||||| | |||| ||||| || || || || ||| || |||||||||||||| || |||
Sbjct 546 ATTGGAGAAGGG-ACTGGGATTGCCGCCAAGGTTCTT-AAATCCATGGGGATCAATCTT- 602
Query 606 AAAGATGCACGTGTGGAGGTTGAGAAGATTATTGGAAGGGGAAGTGGCTTTGTTGCTGTT 665
|||||| |||| ||||| || || ||||| ||||| || || ||||| ||||| || ||
Sbjct 603 AAAGATTCACGCGTGGAAGTGGAAAAGATAATTGGGAGAGGCAGTGGATTTGTGGCAGTG 662
Query 666 GAGATCCCATTCACTCCTCGTGCCAAGCGTGTTCTTGAACTCTCTCTTGAGGAAGCTCGC 725
||||| ||||| |||||||| || ||||| || || || | || || |||||||||||
Sbjct 663 GAGATTCCATTTACTCCTCGCGCAAAGCGGGTGCTGGAGTTGTCACTAGAGGAAGCTCGA 722
Query 726 CAACTTGGTCACAATTACATTGGATCCGAGCACCTTTTGCTTGGGT-TGCTACGTGAAGG 784
|||||||| || || |||||||| || ||||||||||||||| ||| | || ||||||||
Sbjct 723 CAACTTGGGCATAACTACATTGGTTCAGAGCACCTTTTGCTT-GGTCTACTTCGTGAAGG 781
Query 785 TGAAGGAGTTGCAGCTCGAGTCCTT-GAGAATTTAGGTGCAGATCCTAGTAATATTCGCA 843
|| || || |||||||| || ||| |||||||| |||||||||||||||||||| || |
Sbjct 782 GGAGGGTGTGGCAGCTCGTGT-CTTGGAGAATTTGGGTGCAGATCCTAGTAATATCCGGA 840
Query 844 CTCAGGTGATACGCATGGT-GGGTGAGAACAATGAAGTAACTGCTAA-TGTTGG-GGGAG 900
| ||||| ||||| ||||| ||| || ||||||||||| || || || ||||| ||| |
Sbjct 841 CACAGGTTATACGTATGGTCGGG-GAAAACAATGAAGTCACAGC-AAGCGTTGGTGGG-G 897
Query 901 GAAGCAGC---AGCAATAAGATGCCAACTCTTGAAGAGTACGGAACAAACTTGACGAAAC 957
|||||||| | || || |||||||| || |||||||| || || ||||| || ||||
Sbjct 898 GAAGCAGCGGAAACAGCAAAATGCCAACACTAGAAGAGTATGGGACTAACTTAACTAAAC 957
Query 958 TGGCTGAGGAGGGTAAATTGGACCCAGTTGTTGGAAGGCAGCCGCAGATAGAACGTGTGG 1017
| || |||||||||||| |||| || ||||||||||||||||| ||||| ||||| ||||
Sbjct 958 TAGCAGAGGAGGGTAAACTGGATCCGGTTGTTGGAAGGCAGCCACAGATCGAACGAGTGG 1017
Query 1018 TGCAAATTCTTGGC-AGGAGAACCAAGAACAACCCTTGTCTTATTGGAGAACCTGGTGTT 1076
| || | ||||||| | ||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1018 TCCAGA-TCTTGGCTCGAAGAACCAAGAACAACCCGTGTCTTATTGGAGAACCTGGAGTT 1076
Query 1077 GGTAAGACAGCTATTGCTGAAGGACTTGCACAGCGTATTGCCAGTGGCGATGTCCCTGAA 1136
||||||||||| || || ||||| ||||||||||| ||||| ||||| ||||| ||||||
Sbjct 1077 GGTAAGACAGCAATAGCGGAAGGTCTTGCACAGCGAATTGCTAGTGGTGATGTTCCTGAA 1136
Query 1137 ACTATTGAAGGGAAGAAGGTTATAACACTCGACATGGGTCTTCTAGTTGCTGGAACAAAA 1196
|| ||||| ||||||| ||||||||| || || |||||||||||||| |||||||| |||
Sbjct 1137 ACAATTGAGGGGAAGACGGTTATAACCCTTGATATGGGTCTTCTAGTGGCTGGAACGAAA 1196
Query 1197 TATCGTGGAGAGTTTGAAGAGAGATTGAAAAAGCTTATGGAGGAAATTAGACAGAGCGAT 1256
|| |||||||| || || || |||||||| ||||||||||||||||| || || || |||
Sbjct 1197 TACCGTGGAGAATTCGAGGAAAGATTGAAGAAGCTTATGGAGGAAATCAGGCAAAGTGAT 1256
Query 1257 GAGATAA-TCTTATTTATCGACGAAGTGCATACTTTGATTGGGGCTGGAGCAGCAGAAGG 1315
||||||| || ||||||| || |||||||| || | || || || ||||| || |||||
Sbjct 1257 GAGATAATTC-TATTTATTGATGAAGTGCACACGCTCATCGGTGCAGGAGCCGCTGAAGG 1315
Query 1316 TGCAATTGACGCAGCTAACATTTTAAAACCAGCTCTCGCTAGAGGTGAATTGCAGTGCAT 1375
||| || || || |||||||| ||||| |||||||| || ||||||||||||||||| ||
Sbjct 1316 TGCGATCGATGCTGCTAACATCTTAAAGCCAGCTCTAGCAAGAGGTGAATTGCAGTGTAT 1375
Query 1376 TGGAGCGACAACATTAGATGAATACCGAAAGCACATTGAGAAAGACCCTGCCTTGGAAAG 1435
||| || ||||||| ||||| ||| | ||||||||||||||||| ||||| ||||| ||
Sbjct 1376 TGGTGCAACAACATCGGATGAGTACAGGAAGCACATTGAGAAAGATCCTGCATTGGAGAG 1435
Query 1436 AAGATTCCAGCCAGTGAAAGTACCTGAACCTACCGTGGATGAAACTATTCAGATCCTT-A 1494
| | |||||||| ||||| ||||||||||| || || || ||| |||| ||||| |||
Sbjct 1436 ACGTTTCCAGCCTGTGAAGGTACCTGAACCAACTGTAGAAGAAGCTATACAGAT-CTTGC 1494
Query 1495 AGGGTCTGCGAGAGCGATATGAAATTCACCACAAGCTTCGTTACACAGACGAATCTTTAG 1554
| |||||||| ||||| ||||| || |||||||| ||||| ||||| || ||| | || |
Sbjct 1495 ACGGTCTGCGTGAGCGCTATGAGATCCACCACAAACTTCGGTACACTGATGAAGCCTTGG 1554
Query 1555 TAGCAGCTGCACAGTTGTCATACCAGTATATAAGTGATC-GTTTCCTTCCTGACAAGGCA 1613
| || |||||||| |||||| | ||||| || ||||||| |||| ||||| ||||| ||
Sbjct 1555 TTGCTGCTGCACAATTGTCACATCAGTACATCAGTGATCGGTTT-CTTCCCGACAAAGCG 1613
Query 1614 ATTGACTTGATTGATGAAGCTGGTTCTCGGGTTCGACTTCGTCATGCACAGGTCCCTGAG 1673
||||||||||||||||||||||| |||||||||||||| || ||||| ||||| ||||||
Sbjct 1614 ATTGACTTGATTGATGAAGCTGGGTCTCGGGTTCGACTACGCCATGCTCAGGTACCTGAG 1673
Query 1674 GAAGCTAGGGAGCTTGAGAAGGAGCTTAGGCAGAT-AACAAAGGAGAAGAATGAAGCTGT 1732
|||||||| |||||||| ||| | || ||||| || | |||| |||||||||||||||||
Sbjct 1674 GAAGCTAGAGAGCTTGAAAAGCAACTCAGGCAAATCACCAAA-GAGAAGAATGAAGCTGT 1732
Query 1733 CCGTGGCCAGGACTTTGAGAAGGCTGGGACACTTCGGGATAGAGAAATTGAACTCAGAGC 1792
|| ||||| |||||||||| |||||| | | ||| || | ||||| || ||||| ||
Sbjct 1733 GCGAGGCCAAGACTTTGAGATGGCTGGTTCTCATCGTGACCGTGAAATAGAGCTCAGGGC 1792
Query 1793 TGAGGTATCTGCAA--TCCAAGCGAAAGGC-AAGGAGATGAG-CAAAGCAGAGAGTG-AG 1847
|||| || || || | ||| |||| ||| || || | |||||| |||| || ||
Sbjct 1793 TGAGATAGCT--AATGTTTTAGCTTTAGGCAAAGAAG-TG-GCCAAAGCCGAGAATGAAG 1848
Query 1848 ACCG-GTG-AGGAAGGCCCTA-TGGTCACGGAGTCAGACATCCAACACATTG-TGTCTTC 1903
| | | | ||| ||| |||| | ||||| || || |||||||||||||||| || | |
Sbjct 1849 -CTGAG-GAAGG-AGGACCTACT-GTCACAGAATCCGACATCCAACACATTGTTG-CCAC 1903
Query 1904 ATGGACTGGTATTCCTGTTGAGAAAGTATCAACCGATGAGTCTGA-CCGTCTCCT-CAAG 1961
||||| || || || || |||||||| || | ||||| ||| | |||||| || |||
Sbjct 1904 CTGGACAGGAATCCCAGTAGAGAAAGTCTCGTCTGATGAATCT-AGCCGTCTTCTCCAA- 1961
Query 1962 ATGGAAG-AAACCCTCCACA-AACGTA-TCATAGGCCAAGACGAAGCTGTGAAAGCCATA 2018
|||| || | ||||| |||| || | | |||| |||||||| ||||| || ||||| ||
Sbjct 1962 ATGG-AGCAGACCCTTCACACAA-G-AGTCATTGGCCAAGATGAAGCCGTTAAAGCAATC 2018
Query 2019 AGCCGAGCCATTCGCCGTGCACGTGTTGGACTCAAGAATCCTAACCGTCCAATCGCTAGT 2078
||||| || || |||||||| ||||||||||||||||| || |||||||| ||||| |||
Sbjct 2019 AGCCGGGCTATCCGCCGTGCCCGTGTTGGACTCAAGAACCCAAACCGTCCTATCGCCAGT 2078
Query 2079 TTCATATTCTCGGGTCCAACCGGTGTTGGGAAATCTGAGCTTGCCAAAGCTTTAGCAGCT 2138
||||| ||||| |||||||| |||||||||||||| |||||||| || || || || |||
Sbjct 2079 TTCATCTTCTCTGGTCCAACTGGTGTTGGGAAATCAGAGCTTGCTAAGGCCTTGGCTGCT 2138
Query 2139 TACTACTTCGGTTCCGAAGAAGCCATGATTCGTCTAGATATGAGTGAGTTCATGGAGA-G 2197
|||||||| ||||| |||||||| ||||| ||||| || ||||||||||||||||| | |
Sbjct 2139 TACTACTTTGGTTCAGAAGAAGCAATGATACGTCTTGACATGAGTGAGTTCATGGA-ACG 2197
Query 2198 GCACACTGTCTCCAAACTCATCGGTTCACCTCCTGGATATGTCGGATACACCGAAGGAGG 2257
||||||||| || |||||||| |||||||||||||| || || |||||||| ||||| ||
Sbjct 2198 GCACACTGTTTCAAAACTCATTGGTTCACCTCCTGGTTACGTAGGATACACAGAAGGCGG 2257
Query 2258 TCAGTTAACAGAAGCGGTTAGACGTC--GCCCTTACAC-CGTCGTTCTATTCGATGAGAT 2314
||||||||| || |||||| |||| | |||| ||||| | | ||||| || || || ||
Sbjct 2258 TCAGTTAACTGAGGCGGTTCGACG-CAGGCCC-TACACAC-TTGTTCTCTTTGACGAAAT 2314
Query 2315 TGAAAAAGCCCATCCAGATGTTTTCAACATGATGCTTCAAATCCTTGAAGATGGTAGATT 2374
||| ||||| ||||| ||||||||||||||||||||||| ||||| ||||| |||||| |
Sbjct 2315 TGAGAAAGCACATCCTGATGTTTTCAACATGATGCTTCAGATCCTAGAAGACGGTAGACT 2374
Query 2375 AACAGACAGCAAAGGAAGAACAGTTGACTTCAAAAACACACTTCTCATCATGACATCAAA 2434
||| || |||||||||||||| || || ||||| ||||| ||||| |||||||| |||||
Sbjct 2375 AACTGATAGCAAAGGAAGAACTGTCGATTTCAAGAACACGCTTCTTATCATGACTTCAAA 2434
Query 2435 CGTCGGAAGCAGCGTGATTGAGAAAGGAGGAAGACGTATCGGATTCGA-CTTAGACTACG 2493
|| |||||||||||||| || ||||| || ||| | ||||| || || ||| ||| | |
Sbjct 2435 TGTAGGAAGCAGCGTGATCGAAAAAGGTGGTAGAAGAATCGGGTTTGATCTT-GACCATG 2493
Query 2494 ACGAGAAAGACAGCAGTTACAACAGAATCAAGAGCCTT-GTAACAGAGGAGCTGAAACAA 2552
||||||||||||||||||||||||||||||||||| || || || ||||| || ||||||
Sbjct 2494 ACGAGAAAGACAGCAGTTACAACAGAATCAAGAGC-TTAGTGACTGAGGAACTAAAACAA 2552
Query 2553 TACTTCAGACCCGAGTTCCTAAACAGGCTAGACGAGATGATTGTGTTCAGACAGCTAACA 2612
|| |||||||| |||||| | |||||| |||| ||||||||||| ||||||||| | |||
Sbjct 2553 TATTTCAGACCGGAGTTCTTGAACAGGTTAGATGAGATGATTGTTTTCAGACAGTTGACA 2612
Query 2613 AAGCTGGAAGTGAAAGAAATTGCTGACATACTG-TTGAAGGAAGTGTT--CGAGAGGTTG 2669
||||||||||| ||||| |||||||| ||| || || ||| ||||| | ||||| |||
Sbjct 2613 AAGCTGGAAGTCAAAGAGATTGCTGATATAATGCTTAAAG-AAGTGGTGGCGAGAC-TTG 2670
Query 2670 AAGAAGAAAGAGATTGAGCTTCAGGTGACCGAAAGATTCAAAGAGA-GAGTAGTAGACGA 2728
| || |||||||||||||||||||| || || || || ||||| | |||| || || ||
Sbjct 2671 AGGAC-AAAGAGATTGAGCTTCAGGTAACTGAGAGGTTTAAAGA-ACGAGTGGTGGATGA 2728
Query 2729 AGG-TTATAACCCGAGCTATGGAGCAAGACCG-TTGAGAAGAGCCATCATGAGGCTTTTA 2786
||| || | ||| || ||||| || || ||| || ||| | || || |||||||||||
Sbjct 2729 AGGATTCGA-CCCAAGTTATGGCGCGAGGCCGCTT-AGACGTGCAATTATGAGGCTTTTG 2786
Query 2787 GAGGATAGTATGGCAGAGAAGATGCTTGCGAGAGAGATCAAAGAAGGAGACTCGGTGATT 2846
|||||||||||||| |||||||||||| | || || || ||||||||||| || ||||||
Sbjct 2787 GAGGATAGTATGGCGGAGAAGATGCTTTCAAGGGACATTAAAGAAGGAGATTCTGTGATT 2846
Query 2847 GTGGACGTTGACGCTGAAGG 2866
|| || ||||| || |||||
Sbjct 2847 GTTGATGTTGATGCGGAAGG 2866
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 120479444935
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5