BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G51020.1 Length=1133 Score E Sequences producing significant alignments: (Bits) Value Ahg949647 jgi|Araly1|949647|scaffold_801534.1 1404 0.0 > Ahg949647 jgi|Araly1|949647|scaffold_801534.1 Length=850 Score = 1404 bits (760), Expect = 0.0 Identities = 823/853 (96%), Gaps = 5/853 (1%) Strand=Plus/Plus Query 93 ACTAAATTCGAAACCTTTTAATGGGTACCGAGTCGGGTTCGGATCCAGAATCGAGCTCAA 152 ||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 1 ACTAACTTCGAAACCTTTTAATGGGTACTGAGTCGGGTTCGGATCCGGAATCGAGCTCAA 60 Query 153 ACGGGTGGAGCCGTGCTCGTGGTCTAGTTGTCAAGACTCTGGTTTTAATTGGCGGTGCTC 212 |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 61 ACGGTTGGAGCCGTGCTCGTGGTCTAGTGGTCAAGACTCTGGTTTTAATTGGCGGTGCTC 120 Query 213 TTCTCATCAAGCGTCTCACTAAATCCACCACTCGTAGAGATCACGCCCGTGTCGTCTCTC 272 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 121 TTCTCATCAAGCGTCTCACTAAATCCACCACTCGTAGAGATCACGCTCGTGTCGTCTCTC 180 Query 273 GTTCTCTCACCGGAGAGAAGTTTACGAGGGAGCAAGCGTCAAGAGATCCTGATAATTACT 332 ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| Sbjct 181 GTTCTCTCACCGGAGAGAAGTTTACAAGGGAGCAAGCGTCAAGAGATCCTGAGAATTACT 240 Query 333 TCAACATAAGAATGCTGAGTTGTCCAGCTGCTGAAATGGTGGATGGTTCAGAGGTTTTGT 392 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TCAACATAAGAATGCTGAGTTGTCCAGCTGCTGAAATGGTGGATGGTTCAGAGGTTTTGT 300 Query 393 ATCTCGAACAGGCATTTTGGAGGACTCCTCAGAAACCGTTTCGACAAAGATTATATATGG 452 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 301 ATCTCGAACAGGCATTTTGGAGGACTCCACAGAAACCGTTTCGACAAAGATTATATATGG 360 Query 453 TGAAACCGTGTCCAAAAGAGCTAAAATGTGATGTTGAGGTAAGTTCATATGCGATCAGAG 512 | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 361 TTAAACCGTGTCCAAAAGAGCTAAAATGTGATGTCGAGGTAAGTTCATATGCGATCAGAG 420 Query 513 ATGCTGAGGAATACAAAAA-TTTCTGTGACCGGCCTAAGGACCAACGCCCACTTCCTGAA 571 ||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||| Sbjct 421 ATGCTGAGGAATACAAAAACTTT-TGTGACCGCCCTAAGGACCAACGCCCACTTCCTGAA 479 Query 572 GAAGTTATTGGTGACATTGGAGAGCATTTGACGACTATACACCTGAATTGTTGTGACCGT 631 |||||||||||||| ||||| ||||||||||| ||||||||||| |||||||| |||||| Sbjct 480 GAAGTTATTGGTGATATTGGGGAGCATTTGACAACTATACACCTCAATTGTTGCGACCGT 539 Query 632 GGGAAACGTTGCTTGTACGAAGGCTCAACTTCACCTGGTGGATTTCCAAATTCATGGAAC 691 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 GGGAAACGTTGCTTGTACGAAGGCTCAACTTCACCTGGTGGATTTCCAAATTCATGGAAC 599 Query 692 GGGGCTAGCTATTGTACTTCAGATCTTGCAGTTCTGAAAAACAATGAGATACACCTCTGG 751 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 600 GGGGCTAGCTATTGTACTTCAGATCTTGCAGTTCTGAAAAACAGTGAGATACACCTCTGG 659 Query 752 GATCGCGGCTTTGATGAGAATCGAAACCAGGTTTGGGGACCAAAGGAAGGTCCGTACGAG 811 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 660 GATCGCGGCTTTGATGAGAATCGAAACCAGGTTTGGGGACCAAAGGAAGGACCGTACGAG 719 Query 812 TTCAAGCCAGCGACATCATCGAGCATCAACGAAAACTTGTCTGCTTTGAACATCCTTTAT 871 |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 720 TTCAAGCCAGCGACATCATCAAGCATCAACGAAAACTTGTCTGCATTGAACATCCTTTAT 779 Query 872 CAATCTTCTATCGATAAACCAATCCAAGGGTCCCTCATCTTGCAAGACTAGCCAAT-TTG 930 |||||||| || |||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 780 CAATCTTCAATTGATAAACCAATCCAAGGGTCCCTCATTTTGCAAGACTAGCCAATGTT- 838 Query 931 CACCCCCTTTTCT 943 ||| || |||||| Sbjct 839 CACTCC-TTTTCT 850 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42240192036 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5