BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G51040.3 Length=867 Score E Sequences producing significant alignments: (Bits) Value Ahg495170 jgi|Araly1|495170|fgenesh2_kg.8__986__AT5G51040.1 878 0.0 > Ahg495170 jgi|Araly1|495170|fgenesh2_kg.8__986__AT5G51040.1 Length=732 Score = 878 bits (475), Expect = 0.0 Identities = 680/770 (88%), Gaps = 50/770 (6%) Strand=Plus/Plus Query 37 aaaaaTGGCTACCCGAAAAGCTCTGATCAACGTTCACCGGATCATTCGCTCCACCGCCGT 96 ||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||| Sbjct 1 AAAAATGGCTACCCGAAGAGCTCTGATTAACGTCCACCGGATCATTCGCTCCACCGCCGT 60 Query 97 GGTTGGCCGGA-GCTCTATCATTCCTGCCGCCGCTAACCGGTCATATCCTATTATATTCC 155 ||| ||| || |||| || |||||||||||||||||||| |||||||||| Sbjct 61 GGTAAGCC-GACGCTCCGTCGTTCCTGCCGCCGCTAACCGG---------ATTATATTCC 110 Query 156 GGAATGGAGTTGATTTGGGGGCGAGATTCTTCTGTGAGAACACTGCGTCTGCCCAGAATT 215 ||||||||||||||| |||| ||||||||||||||| ||||||||| ||||||||||||| Sbjct 111 GGAATGGAGTTGATTCGGGGACGAGATTCTTCTGTGGGAACACTGCTTCTGCCCAGAATT 170 Query 216 TCGATATTGATCTCTCTAACGAAGAGAATAAGAGAAGAACGATCAACAGATTGTTGTATA 275 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 171 TTGATATTGATCTCTCTAACGAAGAGAATAAGAGAAGAACGATCAACAGATTGTTGTATA 230 Query 276 GGAGCAAGCAAAGAGGGTTTTTGGAACTTGATCTTGTTTTGGGGAATTGGGTTGAGGAGA 335 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 231 GGAGCAAGCAACGAGGGTTTTTGGAACTTGATCTTGTTTTGGGGAATTGGGTTGAGGAGA 290 Query 336 ATGTTAATTCCATGGACGAAAATGGTGTTAAATCCCTAATTCATGTCCTCAATTTGGTAG 395 ||||||||||||||||||||||||||||||||||||| | | | || | | | Sbjct 291 ATGTTAATTCCATGGACGAAAATGGTGTTAAATCCCT-A---A--T--TC-A-----T-G 335 Query 396 AATCTGAAGCTACCAAATTACTTGAAAACCCTGATCTCTGGAAATGGCTAACTGAACAGG 455 || || | |||| | ||||||||||||||||||||||||||||||||||||| Sbjct 336 --TC-----CT--C-AATT--TGGAAAACCCTGATCTCTGGAAATGGCTAACTGAACAGG 383 Query 456 AACAGCCTCCGGAAGCAGTGAGTTCAAATCCGGTGTTCTCGGCGTTACACGAGAAAGTCA 515 ||||||||||||| |||||||| || |||||||||||||| ||||||||||||||||||| Sbjct 384 AACAGCCTCCGGAGGCAGTGAGCTCTAATCCGGTGTTCTCCGCGTTACACGAGAAAGTCA 443 Query 516 TGAAGAATCTGAACAAGCATGCAGCGCCAGAGACTCGTGCAGCGGCTGGACAGCCCTGGG 575 ||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||| Sbjct 444 TGAAGAATCTGAACAAGCATGCAGCACCAGAGACACGCGCAGCGGCTGGACAGCCCTGGG 503 Query 576 TCAGAGGATGGGACGATTTCAAGAGAGGCCGTGATGCTCCCATTTCAGGGAATCAGTAAA 635 ||| ||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct 504 TCAAAGGCTGGGACGATTTCAAGAGAGGCCGTGATGCTCCTATTTCAGGGAACCAGTAAA 563 Query 636 CATAAACTCCTCTTTTCAAAAAGTATCAAAGTGAAAATAAGTTATGATATGAA--A---- 689 |||||||||| |||| ||||| ||| |||| |||||||| ||||||||||||| | Sbjct 564 CATAAACTCCGCTTTACAAAA-GTAACAAACTGAAAATACGTTATGATATGAAGTATCTG 622 Query 690 A---TAGATACCAAGTAGTAGCAACCATTACTTT-ACTATTGTATTAATAAAGAACCAGG 745 | |||||| || | ||||||||||||||||| ||| ||| ||||||||||||||||| Sbjct 623 AAAATAGATATTAAATCGTAGCAACCATTACTTTTACTGTTGCATTAATAAAGAACCAGG 682 Query 746 CCGTGAAGAAGGTCCATGG-CGTTGAGATAATTACAGTGTTGTGTCTTGT 794 ||||||||||||||||| | |||||||||||||||| |||||||||||| Sbjct 683 CCGTGAAGAAGGTCCATTGACGTTGAGATAATTACAAAGTTGTGTCTTGT 732 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32099496114 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5