BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51070.1
Length=3202
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495173 jgi|Araly1|495173|fgenesh2_kg.8__989__AT5G51070.1 4815 0.0
> Ahg495173 jgi|Araly1|495173|fgenesh2_kg.8__989__AT5G51070.1
Length=3097
Score = 4815 bits (2607), Expect = 0.0
Identities = 2853/2974 (96%), Gaps = 8/2974 (0%)
Strand=Plus/Plus
Query 160 CGATCATGGAGGTGTTATCTACTTCCTCACCTCTAACGCTTCACTCCCACCGACTCCtct 219
||||||||||||||||||||||||||||||| |||||||||| ||| | ||| |||||||
Sbjct 126 CGATCATGGAGGTGTTATCTACTTCCTCACCACTAACGCTTCGCTCACGCCGTCTCCTCT 185
Query 220 ctgcttcttcttcttcttcacatgtcacctccatcgccgcttcttcactttcttcattcg 279
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 186 CTTCTTCATCTTCTTCTTCACATGTCACCTCCATCGCCGCTTCTTCACTTTCTTCATTCG 245
Query 280 cttcttcatATCTCGGAATCTCCCTTTCTAACCGCACGATCCACCGCTTCTCCACAACTC 339
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 246 CTTCTTCATATCTCGGAATCTCCCTCTCTAATCGCACGATCCACCGCTTCTCCACAACTC 305
Query 340 CGACGAACTTAAGACGATTTCCTCAAAGAAAACGGAAGAAATTCACTCCGATTTCAGCGG 399
|||||||||| ||||||||||||||||||||||||||||||||||| || ||||| ||||
Sbjct 306 CGACGAACTTCAGACGATTTCCTCAAAGAAAACGGAAGAAATTCACACCAATTTCGGCGG 365
Query 400 TTTTCGAACGGTTCACCGAACGAGCGATCAGAGCTATAATCTTCTCTCAGAAGGAAGCTA 459
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 366 TTTTCGAACGGTTCACCGAACGAGCGATCAGAGCTATCATCTTCTCTCAGAAGGAAGCTA 425
Query 460 AATCGTTGGGAAAAGATATGGTTTACACGCAGCATCTTCTCTTAGGTTTGATCGCTGAGG 519
|||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 426 AATCGTTGGGGAAAGACATGGTTTACACTCAGCATCTTCTCTTAGGTTTGATCGCTGAGG 485
Query 520 ATCGTGATCCTCAAGGCTTCCTTGGATCCGGTATCACCATCGACAAGGCTCGTGAAGCTG 579
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 ATCGTGATCCTCAAGGTTTCCTTGGATCCGGTATCACCATCGACAAGGCTCGTGAAGCTG 545
Query 580 TTTGGAGTATTTGGGACGAAGCTAATTCCGATTCGAAACAGGAGGAAGCTTCTTCTACTT 639
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 546 TTTGGAGTATTTGGGACGAAGCTAATTCCGATTCGAAACAGGAGGAAGTTTCTTCCACTT 605
Query 640 CGTATTCAAAATCGACGGACATGCCTTTCTCTATCAGCACGAAACGAGTCTTTGAAGCTG 699
|||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||
Sbjct 606 CGTATTCAAAATCGACGGACATGCCTTTCTCTATTAGTACGAAACGAGTCTTCGAAGCTG 665
Query 700 CGGTTGAGTACTCTAGGACTATGGATTGTCAATATATCGCACCGGAGCATATAGCCGTTG 759
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 666 CGGTTGAGTACTCTAGGACTATGGATTGTCAATATATCGCACCGGAACATATAGCCGTCG 725
Query 760 GACTCTTCACCGTTGATGATGGTAGCGCCGGCAGAGTTCTCAAGAGATTGGGAGCAAATA 819
||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||
Sbjct 726 GACTCTTCACCGTTGATGACGGTAGCGCCGGCCGAGTCCTCAAGAGATTGGGAGCAAATA 785
Query 820 TGAATTTGCTCACAGCTGCAGCACTTACAAGACTTAAAGGAGAGATTGCTAAAGATGGAA 879
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 786 TGAATTTGCTCACAGCAGCAGCACTCACAAGACTTAAAGGAGAGATTGCTAAAGATGGAA 845
Query 880 GAGAGCCATCTTCTTCATCTAAAGGGAGCTTCGAGTCTCCTCCTAG-TGGTCGAATTGCT 938
|||| ||||||||||||||||||||||||| |||| | |||||| | ||||||||||| |
Sbjct 846 GAGAACCATCTTCTTCATCTAAAGGGAGCTACGAGGCGCCTCCT-GCTGGTCGAATTGTT 904
Query 939 GGTTCTGGACCTGGTGGaaaa---aaaGCGAAAAATGTACTGGAACAGTTCTGTGTGGAT 995
||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 905 GGTTCTGGAACTGGTGGAAAAGCGAAAGCGAAAACTGTACTGGAACAGTTCTGTGTGGAT 964
Query 996 CTGACAGCACGTGCTAGTGAGGGTCTTATTGATCCTGTTATTGGTCGGGAAAAAGAGGTT 1055
|| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 965 CTAACAACACGTGCTAGTGAGGGTCTTATTGATCCTGTTATTGGTCGGGAAAAAGAAGTT 1024
Query 1056 CAAAGAGTTATCCAGATACTTTGCCGCAGAACTAAAAACAACCCAATTCTTCTTGGTGAA 1115
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1025 CAAAGAGTCATCCAGATACTTTGCCGCAGAACTAAAAACAACCCTATTCTTCTTGGTGAA 1084
Query 1116 GCTGGTGTTGGGAAGACTGCCATTGCTGAAGGACTAGCGATTAGTATTGCAGAAGC-CAG 1174
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||
Sbjct 1085 GCTGGTGTTGGGAAGACTGCTATTGCCGAAGGACTAGCGATTAGTATTGCAGAAGCAAAG 1144
Query 1175 TGCTCCTGGATTTCTCTTGACGAAACGCATCATGTCCCTGGATATAGGATTGCTAATGGC 1234
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1145 -GCTCCTGGATTTCTCTTGACGAAACGCATCATGTCCCTCGATATAGGATTGCTAATGGC 1203
Query 1235 CGGTGCAAAAGAAAGGGGAGAGCTGGAGGCTCGAGTCACTGCTTTGATAAGCGAGGTTAA 1294
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||
Sbjct 1204 CGGTGCAAAAGAAAGGGGAGAACTGGAGGCTCGGGTCACTGCTTTGATAAGCGAGGTCAA 1263
Query 1295 AAAATCAGGTAAGGTCATTCTCTTCATAGATGAAGTGCATACACTTATTGGGTCTGGCAC 1354
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1264 AAAATCAGGTAAGGTCATTCTCTTCATAGATGAAGTGCACACACTTATTGGGTCTGGTAC 1323
Query 1355 AGTTGGAAGAGGGAACAAAGGGTCTGGGCTTGACATTGCTAACCTCTTGAAACCATCACT 1414
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1324 AGTTGGAAGAGGGAACAAAGGTTCTGGGCTTGACATTGCCAACCTCTTGAAACCATCACT 1383
Query 1415 TGGAAGGGGTGAACTTCAGTGCATTGCATCCACAACCCTTGACGAATTTAGGAGTCAGTT 1474
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1384 TGGAAGAGGTGAACTTCAGTGCATTGCATCTACAACCCTTGACGAATTTAGGAGTCAATT 1443
Query 1475 TGAGAAGGACAAAGCCCTTGCAAGGAGATTTCAGCCAGTGTTGATTAACGAGCCAAGCGA 1534
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1444 TGAGAAGGACAAAGCCCTTGCAAGGAGATTCCAGCCAGTGTTGATTAATGAGCCAAGCGA 1503
Query 1535 GGAAGATGCGGTGAAGATTTTGTTGGGCCTTCGTGAAAAATATGAAGCCCATCACAATTG 1594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1504 GGAAGATGCGGTGAAGATTTTGTTGGGCCTTCGTGAAAAATATGAAGCCCATCACAATTG 1563
Query 1595 CAAATATACTATGGAAGCCATAGATGCTGCAGTGTACCTTTCATCACGATATATCGCTGA 1654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1564 CAAATATACTATGGAAGCCATAGATGCTGCAGTGTACCTTTCATCACGATATATCGCTGA 1623
Query 1655 TAGATTTCTTCCAGATAAAGCTATTGATCTCATTGACGAGGCAGGAAGCAGAGCTCGTAT 1714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1624 TAGATTTCTTCCAGATAAAGCTATTGATCTCATTGACGAGGCAGGAAGCAGAGCTCGTAT 1683
Query 1715 TGAAGCTTTTAGGAAGAAAAAGGAGGATGCAATCTGTATCCTATCGAAGCCACCTAATGA 1774
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1684 TGAAGATTTTAGGAAGAAAAAGGAGGATGCAATCTGTATCCTATCGAAGCCACCTAATGA 1743
Query 1775 TTACTGGCAAGAGATCAAAACAGTTCAGGCCATGCACGAAGTGGTTCTCTCAAGCAGGCA 1834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1744 TTACTGGCAAGAGATCAAAACAGTTCAGGCCATGCACGAAGTGGTTCTCTCAAGCAGGCA 1803
Query 1835 AAAGCAGGATGACGGTGATGCCATTTCAGATGAGTCTGGTGAACTAGTTGAAGAGTCTTC 1894
|||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 1804 AAAGCAGGATGATGGTGATGCCATTGCAGATGAATCTGGTGAACTAGTTGAAGAGTCTTC 1863
Query 1895 TTTGCCACCTGCAGCAGGCGACGATGAGCCTATACTGGTGGGACCTGATGATATTGCAGC 1954
| |||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1864 TCTGCCGCCTGCATCAGGGGACGATGAGCCTATACTGGTGGGACCTGATGATATTGCAGC 1923
Query 1955 CGTTGCATCGGTTTGGTCTGGAATTCCAGTTCAGCAGATCACTGCAGATGAAAGAATGCT 2014
|||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1924 TGTTGCATCGGCTTGGTCGGGAATACCAGTTCAGCAGATCACTGCAGATGAAAGAATGCT 1983
Query 2015 TCTTATGAGTCTAGAAGATCAGCTTAGAGGCAGAGTTGTTGGTCAAGATGAGGCGGTAGC 2074
||||||| |||||||||| ||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1984 TCTTATGGGTCTAGAAGACCAGCTTAGAAGCAGAGTTGTTGGTCAAGATGAGGCTGTAGC 2043
Query 2075 TGCCATATCTAGAGCTGTGAAGAGGTCCCGGGTTGGCTTAAAAGATCCCGACCGTCCAAT 2134
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2044 TGCCATATCTAGAGCTGTTAAGAGGTCCCGGGTTGGCTTAAAAGATCCCGACCGTCCAAT 2103
Query 2135 TGCTGCTATGCTTTTCTGTGGACCAACAGGGGTTGGAAAAACGGAGCTTACAAAAGCTCT 2194
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2104 TGCCGCTATGCTTTTCTGTGGACCAACAGGGGTTGGAAAAACAGAGCTTACAAAAGCTCT 2163
Query 2195 GGCAGCAAATTATTTTGGCTCGGAAGAATCCATGCTGAGATTGGACATGAGTGAATACAT 2254
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 2164 GGCAGCAAATTATTTTGGATCGGAGGAATCCATGCTGAGATTGGACATGAGTGAATACAT 2223
Query 2255 GGAGCGTCATACTGTGAGCAAGCTGATAGGCTCTCCTCCTGGTTATGTTGGCTTTGAAGA 2314
|||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||
Sbjct 2224 GGAGCGTCATACTGTGAGCAAGTTGATAGGCTCTCCTCCCGGATATGTTGGCTTTGAAGA 2283
Query 2315 AGGTGGAATGCTTACAGAAGCTATCAGGAGACGTCCTTTTACAGTGGTTTTGTTCGATGA 2374
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct 2284 AGGTGGAATGCTTACAGAAGCTATCAGGAGGCGTCCTTTTACAGTGGTATTGTTTGATGA 2343
Query 2375 AATAGAGAAAGCACATCCGGATATCTTCAATATTCTTCTCCAGCTGTTCGAAGATGGCCA 2434
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2344 GATAGAGAAAGCCCATCCGGATATCTTCAATATTCTTCTCCAGCTGTTCGAAGATGGCCA 2403
Query 2435 TCTAACTGATTCACAGGGAAGGAGAGTATCTTTTAAGAACGCATTGATCATAATGACCTC 2494
|||||| |||||||||||||||||||||||||||||||||||| | ||||||||||| ||
Sbjct 2404 TCTAACCGATTCACAGGGAAGGAGAGTATCTTTTAAGAACGCACTAATCATAATGACGTC 2463
Query 2495 TAATGTCGGATCATTGGCCATTGCAAAGGGAAGACATGGTTCAATAGGGTTTATCCTCGA 2554
|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2464 TAATGTCGGATCATCGGCCATTGCAAAGGGAAGACATGGTTCAATAGGTTTTATCCTCGA 2523
Query 2555 TGATGATGAAGAGGCAGCATCTTATACCGGAATGAAAGCTTTGGTAGTCGAAGAACTCAA 2614
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2524 CGATGATGAAGAGGCAGCATCTTATACCGGAATGAAAGCTTTGGTAGTCGAAGAACTCAA 2583
Query 2615 GAACTATTTCCGTCCAGAGTTGTTGAACCGAATAGACGAAATCGTCATTTTCCGACAGCT 2674
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 2584 AAACTATTTCCGTCCAGAGTTGTTGAACCGGATAGATGAAATCGTCATTTTCCGACAGCT 2643
Query 2675 AGAGAAGGCTCAGATGATGGAGATCTTGAACCTGATGCTACAAGACTTGAAGTCGAGGCT 2734
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2644 CGAGAAGGCTCAGATGATGGAGATCTTGAACCTGATGCTACAAGACTTGAAGTCAAGGCT 2703
Query 2735 CGTGGCACTCGGAGTTGGTTTAGAGGTGTCTGAACCCGTCAAGGAGCTCATATGCAAACA 2794
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2704 CGTGGCACTTGGAGTCGGTTTAGAGGTGTCTGAACCCGTCAAGGAGCTCATATGCAAACA 2763
Query 2795 AGGCTATGATCCAGCTTACGGTGCACGACCACTCCGGAGAACTGTCACAGAGATTGTTGA 2854
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 2764 AGGCTATGATCCAGCTTACGGTGCACGGCCACTCCGTAGAACTGTCACAGAGATTGTTGA 2823
Query 2855 AGATCCACTCAGTGAAGCCTTTCTTGCCGGGAGCTTCAAGCCTGGTGATACGGCTTTTGT 2914
|||||||||||| |||||||||||||| |||||||||||||||||||| || ||||||||
Sbjct 2824 AGATCCACTCAGCGAAGCCTTTCTTGCTGGGAGCTTCAAGCCTGGTGACACTGCTTTTGT 2883
Query 2915 AGTTCTTGATGATACCGGAAACCCATCGGTTCGGACCAAACCAGATTCTTCCACTATACG 2974
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2884 AGTTCTCGATGATACCGGAAACCCATCGGTTCGGACCAAACCAGATTCTTCCACTGTACG 2943
Query 2975 AGTTACAGACAAAACATCGATCGCATAGTTTCACCATTGGAGGATTGTATATAAAGATTC 3034
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2944 AGTTACAGACAAGACATCGATCGCATAGTTTCACCATTGGAGGATTGTATATAAAGATTC 3003
Query 3035 TTTGATTATACTCACTCGTCTTATACTTAAATCTCAATTGCTTGTTGCAAACTTGTATAT 3094
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 3004 TTTGATTATACTCACTCGTCTTATACTTGAATCTCAATTGCTTGTTGCAAACCTGTATAT 3063
Query 3095 ATAAA-GATACATAGTGATTAGTCCGTGAGGTAA 3127
||||| ||||||||||||||||| ||||||||||
Sbjct 3064 ATAAACGATACATAGTGATTAGTGCGTGAGGTAA 3097
Score = 145 bits (78), Expect = 2e-33
Identities = 108/121 (89%), Gaps = 8/121 (7%)
Strand=Plus/Plus
Query 1 aaaaacaaaaaaaTAACGTTGCCTTGACGTGTCATCTTACTCCATCCCTTCCTTTTGCTT 60
||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAAAAAAAAAAAAACGTTGCCGTGACGTGTCATCTTACTCCATCCCTTCCTTTTGCTT 60
Query 61 CTTCTCCTTTACTTCCttttttttttC--TTT-C--C-AT-CATTTTGTCACAAACCGGa 113
||||||||||||||||||||||||| | ||| | | | |||||||||||||| ||||
Sbjct 61 CTTCTCCTTTACTTCCTTTTTTTTT-CGATTTTCTTCTAAACATTTTGTCACAAATCGGA 119
Query 114 a 114
|
Sbjct 120 A 120
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 120974618120
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5