BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G51510.1 Length=752 Score E Sequences producing significant alignments: (Bits) Value Ahg497223 jgi|Araly1|497223|fgenesh2_kg.64__3__AT5G51510.1 1007 0.0 Ahg495223 jgi|Araly1|495223|fgenesh2_kg.8__1039__AT5G51510.1 1002 0.0 Ahg905975 jgi|Araly1|905975|Al_scaffold_0003_3103 78.7 6e-14 > Ahg497223 jgi|Araly1|497223|fgenesh2_kg.64__3__AT5G51510.1 Length=675 Score = 1007 bits (545), Expect = 0.0 Identities = 636/679 (94%), Gaps = 9/679 (1%) Strand=Plus/Plus Query 26 CTCTTTCAATCTCCGATCAAATACAAACGCATACTTCCAATTTCGCCGGCGAAGATGCAG 85 |||||||||||||||||||||| ||||||||| ||||| |||||||||| |||||||||| Sbjct 1 CTCTTTCAATCTCCGATCAAATCCAAACGCATTCTTCCGATTTCGCCGGAGAAGATGCAG 60 Query 86 CAGAGGAAGCCGACGGCGGGTAGACCCAGTGGTACCGATGGATCCGATTTCTCATACCGC 145 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CAGAGAAAGCCGACGGCGGGTAGACCCAGTGGTACCGATGGATCCGATTTCTCATACCGC 120 Query 146 ATGGTCGTTGACTCTCGTTACACGAAGGTCACTAAAGAAAAAGCTCGTCTCCGTCCTTTG 205 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 ATGGTCGTTGACTCTCGTTACACGAAGGTCACTAAAGAAAAAGCTCGTCTCCGTCCTTTG 180 Query 206 ATCTTTGTTCAGGCTGCGATTTATGTAATCGGATTATCGTGTGCGTTTCTAACAACAACT 265 |||||||||||||||||||||||| || |||||||||||||||||||||| ||||| ||| Sbjct 181 ATCTTTGTTCAGGCTGCGATTTATTTAGTCGGATTATCGTGTGCGTTTCTGACAACGACT 240 Query 266 AAAAAGGATGAGAAGAACACCCTTGCTATTGCAGCTGCTGTTGCTGGCTTAGTGTGTTCA 325 ||||||||||||| |||||||||||| |||||||| |||| |||||||||||||| |||| Sbjct 241 AAAAAGGATGAGAGGAACACCCTTGCAATTGCAGCAGCTGCTGCTGGCTTAGTGTCTTCA 300 Query 326 TTGATAGGAGAATTAGGTTGCAGACGTAGCAGAGTAAACCTTTTGAGGCTCTACACGGCT 385 || ||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||| Sbjct 301 TTCATAGGAGAATTAGGTTGTAGACGCAGCAGAGTAAACCTTTTGAGGCTCTATACGGCT 360 Query 386 GCATCAACCATTGTTATGGTTCTTTCTGTGTTTTGTGCTGTTAGGAGCAGATTAACCATG 445 ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 361 GCATCTACCATTGTTATGGTTCTTTCAGTGTTTTGTGCTGTTAGGAGCAGATTAACTATG 420 Query 446 GAGGAACGCAATAGCTCTGGAACAACCGCGAAGCTTGAGCTCGCAGGTTTCATTTGTGCT 505 |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 GAGGAACGGAATAGCACTGGAACAACCGCGAAGCTTGAGCTCGCAGGTTTCATTTGTGCT 480 Query 506 CAATTAGGAGCGGTGGTGCAGATATTAGCGATCATCGTTACAGGGTCCCTTGTCAATAAT 565 ||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||| Sbjct 481 CAATTTGGAGCGGTGGTGCAGATATTAGTGATCATCGTTACGGGGTCCCTTGTCAATAAT 540 Query 566 ATGTCTCCACCTACGAAAGCAGCATAGAGGAACATAAAATTTGGGCACTGTCGTGTGTGC 625 |||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||| Sbjct 541 ATGTCTCCGCCTACAAAAGCAGCATAGAGGAACATAAAACTTGGGCACTGTCGTGTGTGC 600 Query 626 TTCTCTTAAATGAAGAA-----CTTAGGAATTTGTAATTTTTGAACCATTTTTGTTCTCT 680 |||||||| |||||||| ||||| ||||||||| ||||||||| || || ||||| Sbjct 601 TTCTCTTACATGAAGAAGAAAACTTAG-AATTTGTAAGTTTTGAACCGTTGTT-TTCTC- 657 Query 681 CCACCAAGTGATTAGTGTT 699 | ||||| ||||||||||| Sbjct 658 C-ACCAAATGATTAGTGTT 675 > Ahg495223 jgi|Araly1|495223|fgenesh2_kg.8__1039__AT5G51510.1 Length=675 Score = 1002 bits (542), Expect = 0.0 Identities = 635/679 (94%), Gaps = 9/679 (1%) Strand=Plus/Plus Query 26 CTCTTTCAATCTCCGATCAAATACAAACGCATACTTCCAATTTCGCCGGCGAAGATGCAG 85 |||||||||||||||||||||| ||||||||| ||||| |||||||||| |||||||||| Sbjct 1 CTCTTTCAATCTCCGATCAAATCCAAACGCATTCTTCCGATTTCGCCGGAGAAGATGCAG 60 Query 86 CAGAGGAAGCCGACGGCGGGTAGACCCAGTGGTACCGATGGATCCGATTTCTCATACCGC 145 ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 61 CAGAGAAAGCCGACGGCGGGTAGACCCAGTGGTACCGATGGATCCGATTTCTCGTACCGC 120 Query 146 ATGGTCGTTGACTCTCGTTACACGAAGGTCACTAAAGAAAAAGCTCGTCTCCGTCCTTTG 205 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 ATGGTCGTTGACTCTCGTTACACGAAGGTCACTAAAGAAAAAGCTCGTCTCCGTCCTTTG 180 Query 206 ATCTTTGTTCAGGCTGCGATTTATGTAATCGGATTATCGTGTGCGTTTCTAACAACAACT 265 |||||||||||||||||||||||| || |||||||||||||||||||||| ||||| ||| Sbjct 181 ATCTTTGTTCAGGCTGCGATTTATTTAGTCGGATTATCGTGTGCGTTTCTGACAACGACT 240 Query 266 AAAAAGGATGAGAAGAACACCCTTGCTATTGCAGCTGCTGTTGCTGGCTTAGTGTGTTCA 325 ||||||||||||| |||||||||||| |||||||| |||| |||||||||||||| |||| Sbjct 241 AAAAAGGATGAGAGGAACACCCTTGCAATTGCAGCAGCTGCTGCTGGCTTAGTGTCTTCA 300 Query 326 TTGATAGGAGAATTAGGTTGCAGACGTAGCAGAGTAAACCTTTTGAGGCTCTACACGGCT 385 || ||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||| Sbjct 301 TTCATAGGAGAATTAGGTTGTAGACGCAGCAGAGTAAACCTTTTGAGGCTCTATACGGCT 360 Query 386 GCATCAACCATTGTTATGGTTCTTTCTGTGTTTTGTGCTGTTAGGAGCAGATTAACCATG 445 ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 361 GCATCTACCATTGTTATGGTTCTTTCAGTGTTTTGTGCTGTTAGGAGCAGATTAACTATG 420 Query 446 GAGGAACGCAATAGCTCTGGAACAACCGCGAAGCTTGAGCTCGCAGGTTTCATTTGTGCT 505 |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 GAGGAACGGAATAGCACTGGAACAACCGCGAAGCTTGAGCTCGCAGGTTTCATTTGTGCT 480 Query 506 CAATTAGGAGCGGTGGTGCAGATATTAGCGATCATCGTTACAGGGTCCCTTGTCAATAAT 565 ||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||| Sbjct 481 CAATTAGGAGCCGTGGTGCAGATATTAGTGATCATCGTTACGGGGTCCCTTGTCAATAAT 540 Query 566 ATGTCTCCACCTACGAAAGCAGCATAGAGGAACATAAAATTTGGGCACTGTCGTGTGTGC 625 |||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||| Sbjct 541 ATGTCTCCGCCTACAAAAGCAGCATAGAGGAACATAAAACTTGGGCACTGTCGTGTGTGC 600 Query 626 TTCTCTTAAATGAAGAA-----CTTAGGAATTTGTAATTTTTGAACCATTTTTGTTCTCT 680 |||||||| |||||||| ||||| ||||||||| ||||||||| || || ||||| Sbjct 601 TTCTCTTACATGAAGAAGAAAACTTAG-AATTTGTAAGTTTTGAACCGTTGTT-TTCTC- 657 Query 681 CCACCAAGTGATTAGTGTT 699 | ||||| ||||||||||| Sbjct 658 C-ACCAAATGATTAGTGTT 675 > Ahg905975 jgi|Araly1|905975|Al_scaffold_0003_3103 Length=210 Score = 78.7 bits (42), Expect = 6e-14 Identities = 42/42 (100%), Gaps = 0/42 (0%) Strand=Plus/Plus Query 80 ATGCAGCAGAGGAAGCCGACGGCGGGTAGACCCAGTGGTACC 121 |||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGCAGCAGAGGAAGCCGACGGCGGGTAGACCCAGTGGTACC 42 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27715360659 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5