BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G51710.1 Length=2133 Score E Sequences producing significant alignments: (Bits) Value Ahg495238 jgi|Araly1|495238|fgenesh2_kg.8__1054__AT5G51710.1 3522 0.0 > Ahg495238 jgi|Araly1|495238|fgenesh2_kg.8__1054__AT5G51710.1 Length=2109 Score = 3522 bits (1907), Expect = 0.0 Identities = 2050/2116 (97%), Gaps = 22/2116 (1%) Strand=Plus/Plus Query 1 ATTGATTCAATTTCAAAATTTTGGATCTAATAAAACCAAAACTCTCA--TTaaaaaaaaa 58 ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 1 ATTGATTCAATTTCAAAATTTTGGATC---TAAAACCAAAACTCTCATCTTAAAAAAAAA 57 Query 59 aataaaaaaaTCAAATCTGATTTCTGAAACGTTTTTG-ATTCGCGACGATTCCCAAATTC 117 || | |||||| ||||||| ||||||||| |||||| |||||||||||||||||||||| Sbjct 58 AA-CACAAAATC-AATCTGAATTCTGAAACATTTTTGAATTCGCGACGATTCCCAAATTC 115 Query 118 CTGGGAAAATATCTCTG-ATCGAT-G-G-CGAGATTCGCAGTGATTGGATTAACGTTCCT 173 ||||||||||| |||| ||| || | | |||||||||||||||||||||| |||||||| Sbjct 116 CTGGGAAAATA--TCTGAATCCATGGCGACGAGATTCGCAGTGATTGGATTTACGTTCCT 173 Query 174 CCTTTTACTTGGTACGTCCTTATCAGCGAGATCTGATGAAGAAACACGCGAGCGATTTTA 233 ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 174 CCTTTTACTTGGTACATCCTTATCAGCGAGATCTGATGAAGAAACGCGCGAGCGATTTTA 233 Query 234 CGGCAACGTCGTGAACTCGACGGCTCCGGGAAACGGTGAAGGAAGTATCGCTAAAATGTT 293 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 234 CGGCAACGTCGTGAACTCGACGGCACCGGGAAACGGTGAAGGAAGTATCGCTAAAATGTT 293 Query 294 CGATCGAGTTCTGGAGAAAGAATTTTCCGAAAACGATTCGCCTGAAGGATCTGATGGAGC 353 ||||||||||||||||||||| |||||||| |||||||| || ||||||||||||||||| Sbjct 294 CGATCGAGTTCTGGAGAAAGAGTTTTCCGATAACGATTCTCCCGAAGGATCTGATGGAGC 353 Query 354 TAGCTTTAACAGCAGTGTTGCTGATCAACAAGCTGAAATAGAGACTGTTGCTAAAGTAAC 413 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 354 TAGCTTTAACAGCAGTGTTGCTGATCAACAAGCTGAGATAGAGACTGTTGCTAAAGTAAC 413 Query 414 TCATGAGAAGGGCAAAAGAAATGATACACAAGAAAATAATGGTACGAGACCGTTTCAACT 473 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 414 TCATGAGAAGGGCAAAAGAAATGATACACAAGAAAACAATGGTACGAGACCGTTTCAACT 473 Query 474 TCAAGATGTGTTTTCCCTGGAGAATGAAGATTCTGATGATATGACTCTTATTGACAAGAA 533 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 474 TCAAGATGTGTTTTCCCTGGAAAATGAAGATTCTGATGATATGACTCTTATTGACAAGAA 533 Query 534 GAATAATGTTTTTGTCATGTCAAACAAGAAATCTAAGTATCCGATACTTCAAGTAGATTT 593 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 534 GAATAATGTTTTTGTCATGTCAAACAAGAAATCTAAGTATCCGATCCTTCAAGTAGATTT 593 Query 594 GAGATTAATATCAGATTTGGTGGTCATTATTGTTTTTGCTGCAATTGGTGGCATCGTCTT 653 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 594 GAGATTAATATCAGATTTGGTGGTCATTATTGTTTTTGCTGCGATTGGTGGCATCGTCTT 653 Query 654 CTCTTGTCTTGGACAACCGGTCATTGTTGGATATCTTCTTGCGGGGTCAATCATTGGGCC 713 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 654 CTCTTGTCTTGGACAACCGGTCATTGTTGGATATCTTCTTGCGGGGTCGATCATTGGGCC 713 Query 714 AGGAGGATTGAAATTCATTAGTGAAATGGTTCAGGTTGAAACCGTAGCACAGTTTGGTGT 773 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 714 AGGAGGATTGAAATTCATTAGTGAAATGGTTCAGGTTGAAACCGTAGCACAGTTTGGTGT 773 Query 774 TGTTTTCCTTCTGTTTGCTTTGGGTTTGGAATTCTCAATGACTAAGCTGAAAGTCGTTGG 833 |||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 774 TGTTTTTCTTCTGTTTGCTTTGGGCTTGGAATTCTCAATGACGAAGCTGAAAGTCGTTGG 833 Query 834 CCCAGTTGCTGTCCTTGGAGGGCTTCTTCAAATTGTCTTACTCATGTTTTTGTGTGGTGT 893 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 834 CCCAGTTGCTGTCCTTGGAGGGCTTCTTCAAATTGTCTTACTCATGTTTTTGTGTGGTGT 893 Query 894 AACTGCCTTGTTGTGTGGAGCAAGGTTGTCAGAGGGTATTTTTGTTGGTGCCTTTTTATC 953 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 894 AACTGCCTTGTTGTGTGGAGCAAGGTTGTCAGAGGGTATTTTTGTTGGTGCCTTTTTATC 953 Query 954 TATGTCATCAACTGCAGTGGTGGTAAAGTTTTTGGTAGAACGGAACAGTACAAGTTCTCT 1013 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 954 TATGTCATCAACTGCAGTGGTGGTAAAGTTTTTGGTAGAACGGAACAGTACAAGTTCTCT 1013 Query 1014 TCATGGTCAAGTTACTATAGGGATACTTATCTTTCAGGACTGTGTTGTTGGTTTACTATT 1073 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1014 TCATGGTCAAGTTACGATAGGGATACTTATCTTTCAGGACTGTGTTGTTGGTTTACTATT 1073 Query 1074 CGCCTTGCTTCCAGTTTTGGGTGGTAACAGTGGTTTACTACAAGGAATTATATCAATGGG 1133 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1074 CGCCTTGCTTCCAGTTTTGGGTGGTAACAGTGGTTTACTACAAGGAATTATATCAATGGG 1133 Query 1134 AAAGCTGCTACTGATATTGTCCATATATCTCACTGTGGCATCTCTATTAACGTGGTCATT 1193 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1134 AAAGCTGCTACTGATATTGTCCATATATCTCATTGTGGCATCTCTATTAACGTGGTCATT 1193 Query 1194 TGTACCTCGTTTTCTGAAGCTAATGATTCAATTATCATCTCAAACAAATGAACTTTACCA 1253 |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1194 TGTACCCCGTTTTTTGAAGCTAATGATTCAATTATCATCTCAAACAAATGAACTTTACCA 1253 Query 1254 GTTAGCTGCTGTGGCATTCTGCTTACTATCTGCATGGTGCAGTGACAAGCTGGGTCTTAG 1313 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1254 GTTAGCTGCTGTGGCATTCTGCTTACTATCTGCATGGTGCAGTGACAAGCTGGGTCTTAG 1313 Query 1314 TCTTGAGTTGGGATCATTTGTGGCTGGCGTTATGTTGTCTACGACTGAATTTGCTCAACA 1373 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1314 TCTTGAGTTGGGATCATTTGTGGCTGGCGTTATGTTGTCTACGACTGAATTTGCTCAACA 1373 Query 1374 TACACTAGAGCAGGTGGAACCAATTCGTAATCTGTTTGCCGCTCTCTTTCTATCTAGTAT 1433 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1374 TACATTAGAGCAGGTGGAACCAATTCGTAATCTGTTTGCCGCTCTCTTTCTATCTAGTAT 1433 Query 1434 CGGGATGCTCATTAATGTTCACTTTCTATGGAACCACGTGGATATCCTTCTAGCGTCGGT 1493 |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct 1434 CGGGATGCTCATTAATGTGCACTTTCTATGGAACCACGTGGATATCCTTCTGGCGTCGGT 1493 Query 1494 GATTCTAGTGATAGTTATTAAGACAGCAATTGCAGCAGTAGTTGTTAAGGCTTTTAGGTA 1553 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1494 GATTCTAGTGATAGTTATTAAGACAGCAATTGCAGCAGTAGTTGTTAAGGCTTTTAGGTA 1553 Query 1554 CAACATGAGGATATCTTTCCATGTCGGGGTACTGCTTGCTCAGATTGGAGAGTTCGCCTT 1613 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1554 CAACATGAGGATATCTTTCCATGTCGGGGTACTGCTTGCTCAGATTGGAGAGTTCGCCTT 1613 Query 1614 TGTTCTTCTAAGCCGAGCGTCAAACCTACACGTAATCGAGGGGAAAATGTATCTACTCCT 1673 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1614 TGTTCTTCTAAGCCGAGCGTCAAACCTACACGTAATCGAGGTGAAAATGTATCTACTCCT 1673 Query 1674 TTTGGGCACAACTGCTCTAAGTCTCGTAACGACTCCGTTGCTATTCAAGTTAATACCGAG 1733 |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1674 TTTGGGCACAACAGCTCTAAGTCTTGTAACGACTCCGTTGCTATTCAAGTTAATACCGAG 1733 Query 1734 TGCAATGAACCTCGGTGTCCTGCTTCGATGGTTCCCTTCTGAGAACAGTTCTCCGAACGA 1793 ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| Sbjct 1734 TGCAATGAACCTCGGTGTCCTCCTTCGATGGTTCCCTTCTGAGAACAGTGCTCCGAACGA 1793 Query 1794 GAGTTTGCAGGAGAAAGCATCATTGATAGAAGTACATAACAGAACCAAGTGATCTCTCTT 1853 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1794 GAGTTTGCAGGAGAAAGCATCATTGATAGAAGTACATAACAGAACCAAGTGATCTCTCAT 1853 Query 1854 TTGTACATTGACTGAAGATTTAAGAAG-AAAAAA-CAGATTTTGATCCGATATACTCAAC 1911 |||| |||||||||||||||||||||| |||||| ||||||||||||||||| ||||||| Sbjct 1854 TTGTGCATTGACTGAAGATTTAAGAAGGAAAAAAACAGATTTTGATCCGATAAACTCAAC 1913 Query 1912 TAGGAGGCAGAAAAAA-----CATTTGAAACTGACCAAATCAGATCCAAGACTTGCTTTT 1966 |||| |||| |||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 1914 TAGGTGGCAAAAAAAAAAAAACATTTAAAACTGACCAAATCAGATCCAAGACTTGCTTTT 1973 Query 1967 TGTATTTTCTTAACTCTTTATTTTTTGTAATATCGTATATATTTAGTATTCACTACCTTC 2026 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1974 TGTATTTTCTTAACTCTTTATTTTTTGTAATATGGTATATATTTAGTATTCACTACCTTC 2033 Query 2027 TTGTGTAGTTCAAGCG-CTTATAGCTTGTTTTACTTGGTGTAAACGTTGTAACGATATTA 2085 |||||||||||||| | ||||||||||||||||||||||||||| ||||||| ||||||| Sbjct 2034 TTGTGTAGTTCAAGTGACTTATAGCTTGTTTTACTTGGTGTAAAAGTTGTAATGATATTA 2093 Query 2086 GCCTTATATGCTGTTG 2101 |||||||||||||||| Sbjct 2094 GCCTTATATGCTGTTG 2109 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 80256146215 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5