BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G51720.1 Length=498 Score E Sequences producing significant alignments: (Bits) Value Ahg495239 jgi|Araly1|495239|fgenesh2_kg.8__1055__AT5G51720.1 747 0.0 Ahg948392 jgi|Araly1|948392|scaffold_800279.1 54.7 6e-07 > Ahg495239 jgi|Araly1|495239|fgenesh2_kg.8__1055__AT5G51720.1 Length=477 Score = 747 bits (404), Expect = 0.0 Identities = 455/479 (95%), Gaps = 6/479 (1%) Strand=Plus/Plus Query 1 CTTCATAAACAAATCACTGCCACATAGAGAGTGAGTAAGAGAGAGTTATTCCAATGGCTA 60 ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| Sbjct 1 CTTCATAAACAAATCACTGCCACATAGAGGGTGAGTAAGAGAGAGTCGTTCCAATGGCTA 60 Query 61 TCATCGCAAGCACGTTCGGCACGGGGCTAAGTTACGCCGGGGAGCTTCCATTCAAGCCAG 120 ||||||||| |||||||||||||||||||||||||||||| ||||||||||||| | || Sbjct 61 TCATCGCAACCACGTTCGGCACGGGGCTAAGTTACGCCGGTCAGCTTCCATTCAAACGAG 120 Query 121 TCACCGGGGGAGAGGTGGGACGAAAGCAGCAGAGAATGGTGGTGGTGAGAGCAGAAGGCG 180 |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 121 TCACCGCGGGAGAGGTGGGACAAAAGCAGCAGAGAATGGTGGTGGTGAGAGCAGAAGGCG 180 Query 181 GT---GGAGGTATCAATCCGGAGATCAGAAAGAACGAAGATAAGGTTGTTGACTCCGTCG 237 || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 181 GTGGAGGAGGTATCAATCCGGAGATCAGAAAGAACGAAGAGAAGGTTGTTGACTCCGTCG 240 Query 238 TTGTCACCGAGCTTTCCAAGAACATAACTCCCTATTGCAGGTGTTGGAGGTCGGGGACGT 297 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TCGTCACCGAGCTTTCCAAGAACATAACTCCCTATTGCAGGTGTTGGAGGTCGGGGACGT 300 Query 298 TTCCATTGTGTGATGGGAGTCATGTGAAGCACAACAAAGCTAATGGAGATAACGTTGGCC 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TTCCATTGTGTGATGGGAGTCATGTGAAGCACAACAAAGCTAATGGAGATAACGTTGGCC 360 Query 358 CTCTTCTTCTCAAGAAACAGTAGTTCtttttgttttttttCTTGTTGTTTGTGTG-TGAT 416 |||||||||||||||||||||||||||||||||||||||||| ||| ||| | || |||| Sbjct 361 CTCTTCTTCTCAAGAAACAGTAGTTCTTTTTGTTTTTTTTCTCGTT-TTTCT-TGGTGAT 418 Query 417 GTATTGATACTCGTCTAATTGAATAATAAGAAAATTATCTAGTGAAATGAAGCTTATAA 475 |||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||| Sbjct 419 GTATTGATACTCGTCTAATTGAATAAAAAGATCATTATCTAGTGAAATTAAGCTTATAA 477 > Ahg948392 jgi|Araly1|948392|scaffold_800279.1 Length=191 Score = 54.7 bits (29), Expect = 6e-07 Identities = 29/29 (100%), Gaps = 0/29 (0%) Strand=Plus/Plus Query 297 TTTCCATTGTGTGATGGGAGTCATGTGAA 325 ||||||||||||||||||||||||||||| Sbjct 49 TTTCCATTGTGTGATGGGAGTCATGTGAA 77 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 18085749186 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5