BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G51720.1

Length=498
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg495239 jgi|Araly1|495239|fgenesh2_kg.8__1055__AT5G51720.1         747    0.0  
  Ahg948392 jgi|Araly1|948392|scaffold_800279.1                       54.7    6e-07


> Ahg495239 jgi|Araly1|495239|fgenesh2_kg.8__1055__AT5G51720.1
Length=477

 Score =  747 bits (404),  Expect = 0.0
 Identities = 455/479 (95%), Gaps = 6/479 (1%)
 Strand=Plus/Plus

Query  1    CTTCATAAACAAATCACTGCCACATAGAGAGTGAGTAAGAGAGAGTTATTCCAATGGCTA  60
            ||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||
Sbjct  1    CTTCATAAACAAATCACTGCCACATAGAGGGTGAGTAAGAGAGAGTCGTTCCAATGGCTA  60

Query  61   TCATCGCAAGCACGTTCGGCACGGGGCTAAGTTACGCCGGGGAGCTTCCATTCAAGCCAG  120
            ||||||||| ||||||||||||||||||||||||||||||  ||||||||||||| | ||
Sbjct  61   TCATCGCAACCACGTTCGGCACGGGGCTAAGTTACGCCGGTCAGCTTCCATTCAAACGAG  120

Query  121  TCACCGGGGGAGAGGTGGGACGAAAGCAGCAGAGAATGGTGGTGGTGAGAGCAGAAGGCG  180
            |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  121  TCACCGCGGGAGAGGTGGGACAAAAGCAGCAGAGAATGGTGGTGGTGAGAGCAGAAGGCG  180

Query  181  GT---GGAGGTATCAATCCGGAGATCAGAAAGAACGAAGATAAGGTTGTTGACTCCGTCG  237
            ||   ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  181  GTGGAGGAGGTATCAATCCGGAGATCAGAAAGAACGAAGAGAAGGTTGTTGACTCCGTCG  240

Query  238  TTGTCACCGAGCTTTCCAAGAACATAACTCCCTATTGCAGGTGTTGGAGGTCGGGGACGT  297
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  TCGTCACCGAGCTTTCCAAGAACATAACTCCCTATTGCAGGTGTTGGAGGTCGGGGACGT  300

Query  298  TTCCATTGTGTGATGGGAGTCATGTGAAGCACAACAAAGCTAATGGAGATAACGTTGGCC  357
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  TTCCATTGTGTGATGGGAGTCATGTGAAGCACAACAAAGCTAATGGAGATAACGTTGGCC  360

Query  358  CTCTTCTTCTCAAGAAACAGTAGTTCtttttgttttttttCTTGTTGTTTGTGTG-TGAT  416
            |||||||||||||||||||||||||||||||||||||||||| ||| ||| | || ||||
Sbjct  361  CTCTTCTTCTCAAGAAACAGTAGTTCTTTTTGTTTTTTTTCTCGTT-TTTCT-TGGTGAT  418

Query  417  GTATTGATACTCGTCTAATTGAATAATAAGAAAATTATCTAGTGAAATGAAGCTTATAA  475
            |||||||||||||||||||||||||| ||||  ||||||||||||||| ||||||||||
Sbjct  419  GTATTGATACTCGTCTAATTGAATAAAAAGATCATTATCTAGTGAAATTAAGCTTATAA  477


> Ahg948392 jgi|Araly1|948392|scaffold_800279.1
Length=191

 Score = 54.7 bits (29),  Expect = 6e-07
 Identities = 29/29 (100%), Gaps = 0/29 (0%)
 Strand=Plus/Plus

Query  297  TTTCCATTGTGTGATGGGAGTCATGTGAA  325
            |||||||||||||||||||||||||||||
Sbjct  49   TTTCCATTGTGTGATGGGAGTCATGTGAA  77



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18085749186


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5