BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51820.1
Length=2159
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495247 jgi|Araly1|495247|fgenesh2_kg.8__1063__AT5G51820.1 2977 0.0
Ahg896935 jgi|Araly1|896935|Al_scaffold_0005_901 97.1 5e-19
> Ahg495247 jgi|Araly1|495247|fgenesh2_kg.8__1063__AT5G51820.1
Length=1984
Score = 2977 bits (1612), Expect = 0.0
Identities = 1884/2009 (94%), Gaps = 43/2009 (2%)
Strand=Plus/Plus
Query 125 ATGACGTCGACCTACACGAGATTCGATACCGTATTTCTCTTTTCTAGGTTCGCCGGCGCT 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGACGTCGACCTACACGAGATTCGATACCGTATTTCTCTTTTCTAGGTTCGCCGGCGCT 60
Query 185 AAGTATTCGCCGTTATTGCCGT---CTCCGTCGT-TTA--CTT-T-ATCTA-CTTCCGGC 235
|||||||||||||| || || | || | |||| | ||| | |||| |||||||
Sbjct 61 AAGTATTCGCCGTTGTTTCCCTCACCTTCTTCGTCACACTCTTCTCTTCTACCTTCCGGA 120
Query 236 ATTCATATCAGAACCAAACCGAATTCTCGTTTTCACTCGATTATAGCATCCTCCTCATCT 295
|||||| | ||||||||||||| ||| ||||| ||||||||||| |||||||| |||||
Sbjct 121 ATTCATCTTAGAACCAAACCGACTTCGCGTTTACACTCGATTATCGCATCCTCTTCATC- 179
Query 296 TCATCTGTAGTCGCCGGAACTGATAGCATTGAGATTAAATCGTTGCCGACGAAGCCTATT 355
| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 180 T-ATC----GTCGCCGGAACTGAAAGCATTGAGATTAAATCGTTGCCGACGAAGCCTATT 234
Query 356 GAAGGACAAAAGACTGGAACTAGCGGACTCCGGAAGAAGGTGAAAGTTTTCATGGAAGAT 415
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 GAAGGACAAAAGACTGGAACTAGCGGACTCCGGAAGAAGGTGAAAGTTTTCATGGAAGAG 294
Query 416 AATTATTTAGCCAACTGGATTCAGGCATTGTTTAATTCATTGCCACTTGAGGATTATAAG 475
|||||| ||||||| |||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 295 AATTATCTAGCCAATTGGATTCAGGCATTGTTTAATTCATTGCCACTGGAGAATTATAAG 354
Query 476 AATGCAACGTTGGTTTTAGGAGGTGATGGTCGTTACTTTAACAAAGAAGCTTCACAGATC 535
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 AATGCGACGTTGGTTTTAGGAGGTGATGGTCGTTACTTTAACAAAGAAGCTTCACAGATC 414
Query 536 ATTATCAAAATTGCTGCTGGGAATGGAGTTGGACAAATTTTAGTTGGAAAGGAAGGCATT 595
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 415 ATTATTAAAATTGCTGCTGGGAATGGAGTTGGGCAAATTTTAGTTGGAAAGGAAGGCATT 474
Query 596 TTGTCAACCCCAGCGGTTTCCGCTGTAATCAGGAAAAGAAAGGCAAATGGAGGATTCATT 655
||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 475 TTGTCAACCCCAGCGGTTTCCGC-----T-------------GCAAATGGAGGATTCATT 516
Query 656 ATGAGTGCAAGCCATAATCCTGGTGGACCTGAATATGACTGGGGTATCAAGTTCAATTAC 715
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 517 ATGAGTGCAAGTCATAATCCTGGTGGACCTGAATATGACTGGGGTATCAAGTTCAATTAC 576
Query 716 AGCAGTGGTCAGCCTGCTCCTGAAACCATTACTGACAAAATATATGGAAATACACTTTCA 775
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 577 AGCAGTGGTCAGCCTGCTCCTGAAACCATTACTGACAAAATTTATGGAAATACACTTTCA 636
Query 776 ATCTCTGAGATTAAGGTGGCAGAGATTCCTGATATTGATCTTTCTCAAGTTGGAGTGACC 835
||||||||||||||||||||||||||||| || |||||||||||||| |||||||| |||
Sbjct 637 ATCTCTGAGATTAAGGTGGCAGAGATTCCCGACATTGATCTTTCTCATGTTGGAGTTACC 696
Query 836 AAATATGGGAATTTCAGTGTAGAAGTTATAGATCCTGTTTCCGACTATTTGGAGCTCATG 895
|||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||
Sbjct 697 AAATATGGGAATTTCAGTGTGGAAGTTATAGATCCTGTTTCTGACTACTTGGAGCTCATG 756
Query 896 GAGGATGTTTTCGACTTTGATCTCATCAGAGGTCTTCTTTCAAGATCAGATTTTGGGTTC 955
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 757 GAGGACGTGTTCGACTTTGATCTCATCAGAGGTCTTCTTTCAAGATCAGATTTTGGGTTT 816
Query 956 ATGTTTGATGCCATGCATGCTGTTACTGGTGCTTATGCGAAACCAATTTTTGTCGACAAT 1015
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 817 ATGTTTGATGCCATGCATGCTGTTACTGGTGCTTATGCGAAACCAATCTTTGTCGATAAT 876
Query 1016 CTTGGAGCCAAACCGGATTCAATTTCCAACGGAGTTCCCCTGGAAGATTTTGGGCATGGC 1075
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 877 CTTGGAGCCAAACCGGATTCAATTTCCAATGGAGTTCCCCTGGAAGATTTTGGGCATGGC 936
Query 1076 CATCCTGATCCTAATTTGACATATGCAAAGGATTTGGTTGATGTCATGTATCGTGACAAT 1135
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 937 CATCCAGATCCTAATTTAACATATGCAAAGGATTTGGTTGATGTCATGTATCGTGACAAT 996
Query 1136 GGACCGGATTTCGGAGCAGCAAGTGATGGTGATGGTGACAGAAATATGGTTTTAGGAAAC 1195
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 997 GGACCTGATTTCGGAGCAGCAAGTGATGGTGATGGTGACAGAAATATGGTTTTAGGAAAC 1056
Query 1196 AAATTCTTTGTCACTCCTTCAGACTCTGTAGCTATCATCGCAGCCAATGCACAAGAAGCA 1255
|| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1057 AAGTTCTTTGTCACTCCTTCAGACTCTGTCGCTATCATCGCTGCCAATGCACAAGAAGCA 1116
Query 1256 ATTCCATATTTCCGTGCTGGTCCTAAGGGGCTGGCACGTTCTATGCCGACAAGTGGTGCT 1315
|||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct 1117 ATTCCATATTTCCGTGCTGGTCCTAAGGGGCTAGCACGCTCTATGCCAACAAGTGGTGCT 1176
Query 1316 CTTGATCGTGTTGCCGAGAAGTTGAAGCTTCCTTTCTTCGAGGTTCCCACTGGATGGAAA 1375
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1177 CTTGATCGTGTTGCGGAGAAGTTGAAGCTTCCTTTCTTCGAGGTTCCCACCGGATGGAAA 1236
Query 1376 TTTTTTGGAAATCTTATGGATGCTGGAAAATTGTCAATCTGTGGAGAAGAGAGCTTTGGC 1435
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1237 TTTTTTGGAAATCTTATGGATGCTGGAAAATTGTCAATCTGTGGAGAAGAGAGTTTTGGC 1296
Query 1436 ACAGGTTCTGATCACATCCGTGAGAAGGATGGAATATGGGCTGTGTTGGCGTGGCTTTCG 1495
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1297 ACAGGTTCTGATCACATCCGTGAGAAAGATGGCATATGGGCTGTGTTGGCGTGGCTTTCG 1356
Query 1496 ATCCTTGCTCATCGCAACAAGGACACGAAACCAGGGGACAAGTTGGTGTCTGTTGCAGAT 1555
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1357 ATCCTAGCTCATCGCAACAAGGACACAAAACCAGGGGACAAGTTGGTGTCTGTTGCAGAT 1416
Query 1556 GTTGTGAAAGAGTATTGGGCGACATACGGAAGGAACtttttttCAAGATACGACTATGAA 1615
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1417 GTTGTAAAAGAGTATTGGGCGACATACGGAAGGAACTTTTTCTCAAGATACGACTATGAA 1476
Query 1616 GAATGTGAATCTGAAGGAGCCAATAAAATGATCGAGTATCTTAGAGAAATCTTGTCTAAG 1675
|| |||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||
Sbjct 1477 GAGTGTGAATCTGAAGGAGCCAATAAAATGATCGAGTATCTGAGAGATATCGTGTCTAAA 1536
Query 1676 AGCAAGGCCGGTG-ACGTTTATGGAAACTATGTCCTCCAGTTTGCAGATGACTTCTCATA 1734
||||||||||||| | | |||||||||||||||||||||||||||||||||||| |||||
Sbjct 1537 AGCAAGGCCGGTGAAAG-TTATGGAAACTATGTCCTCCAGTTTGCAGATGACTTTTCATA 1595
Query 1735 CACAGACCCTGTTGATGGAAGTGTTGCATCCAAGCAAGGTGTTCGGTTTGTGTTCACGGA 1794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1596 CACAGACCCTGTTGATGGAAGTGTTGCATCCAAGCAAGGTGTTCGGTTTGTGTTCACGGA 1655
Query 1795 TGGATCCAGAATCATATTTCGTTTATCCGGAACTGGCTCAGCTGGAGCTACAGTGCGAAT 1854
|||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 1656 TGGATCCAGAATCATATTTCGTTTATCCGGAACTGGTTCGGCTGGAGCTACAGTTCGAAT 1715
Query 1855 ATACATTGAACAATTTGAGCCAGACGTTTCAAAACATGATGTGGATGCACAAATAGCTCT 1914
|||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1716 ATACATTGAACAATATGAGCCAGACGTTTCAAAGCATGATGTTGATGCACAAATAGCTCT 1775
Query 1915 TAAACCTTTAATCGATCTTGCATTGTCTGTATCAAAGCTGAAGGACTTCACAGGGAGGGA 1974
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1776 AAAACCTTTAATTGATCTTGCATTGTCTGTATCAAAGCTGAAGGAATTCACAGGGAGGGA 1835
Query 1975 GAAGCCCACTGTCATTACATGAAGAG-AA------GTGTCACATGGTCCTTTCGATAAGG 2027
||||||||||||||| ||||||||| || ||||||||||||| ||| || ||||
Sbjct 1836 GAAGCCCACTGTCATCACATGAAGAATAAAATCCTGTGTCACATGGTCTTTTTGAAAAGG 1895
Query 2028 CAATTTGGGTTCCTGACTTCAGTTTTGTCTGCCATGTTTATTTGAAAA-TTCCAGAGCAA 2086
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1896 CAAGTTGGGTTCCTGACTTCAGTTTTGTCTGCCATGTTTATTTGAAAAATTCCAGAGCAA 1955
Query 2087 TGAAATGCTTATCCTTGTAACATATATAA 2115
||||||||||||| ||||||||||||||
Sbjct 1956 TGAAATGCTTATCAGTGTAACATATATAA 1984
> Ahg896935 jgi|Araly1|896935|Al_scaffold_0005_901
Length=534
Score = 97.1 bits (52), Expect = 5e-19
Identities = 54/55 (98%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 531 AGATCATTATCAAAATTGCTGCTGGGAATGGAGTTGGACAAATTTTAGTTGGAAA 585
||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 35 AGATCATTATCAAAATTGCTGCTGGGAATGGAGTTGGGCAAATTTTAGTTGGAAA 89
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81246492585
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5