BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G51980.2 Length=1512 Score E Sequences producing significant alignments: (Bits) Value Ahg495266 jgi|Araly1|495266|fgenesh2_kg.8__1082__AT5G51980.1 2169 0.0 Ahg329122 jgi|Araly1|329122|fgenesh1_pm.C_scaffold_7001349 939 0.0 > Ahg495266 jgi|Araly1|495266|fgenesh2_kg.8__1082__AT5G51980.1 Length=1714 Score = 2169 bits (1174), Expect = 0.0 Identities = 1379/1474 (94%), Gaps = 29/1474 (2%) Strand=Plus/Plus Query 48 TTTTTCTCTGCATTATTATCACTTCACCACATTCACAACAATCCCAAATTTTTCTTTCTC 107 ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1 TTTTTCTCTTCATTATTATTACTTCACCACATTCACAACAATCCCAAATTTTTCTTTCTT 60 Query 108 ATACTTTCATATTTTGATTACTACTTCTCAGAGATTCTTTTGAGAAAGAGAGTGAGAGGC 167 |||||| ||||||||||||||||||| ||||||||| |||| ||||||||||| ||| | Sbjct 61 ATACTTCCATATTTTGATTACTACTTTTCAGAGATTGTTTTTAGAAAGAGAGT--GAGTC 118 Query 168 AATaaaaaaaGCTATGGATTTCGATTTGAACGGAGGAAACAAACGAGTCTTCAACAGACT 227 ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 119 AATAAAAGAAGCTATGGATTTTGATTTGAACGGAGGAAACAAACGAGTCTTCAACAGACT 178 Query 228 ---------CGGTGGCGGTGGCGGGTCAACTCGTCCGATGGCACCAACGGATACAAGACA 278 ||| ||||| ||||||||||||||| |||||||||||||||||||||| || Sbjct 179 CGGCGGCGGCGGCGGCGGCGGCGGGTCAACTCGTACGATGGCACCAACGGATACAAGGCA 238 Query 279 AAAGGTTTGTTTCCACTGGCGAGCCGGGCGTTGTAATCGTTCTCCTTGTCCTTATCTACA 338 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 239 AAAGGTTTGTTTCCACTGGCGAGCCGGGCGTTGTAATCGTTCTCCTTGTCCTTATCTACA 298 Query 339 TCGGGAATTACCGGGTCCTGGTCCGGGTCAAGGTCAAGGCCCGGGTTATACGAACAAAAG 398 ||| |||||||||||||||||||||||||| |||||||| ||||||||||| |||||||| Sbjct 299 TCGAGAATTACCGGGTCCTGGTCCGGGTCAGGGTCAAGGTCCGGGTTATACAAACAAAAG 358 Query 399 GGTCGCTGAGGAATCTGGTTTCGCGGGTCCGAGTCATCGGAGAGGACCTGGGTTTAATGG 458 ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 359 GGTCGCTGAAGAATCTGGTTTTGCGGGTCCGAGTCATCGGAGAGGACCTGGGTTTAACGG 418 Query 459 GAACTCGAGTAGTAGTTGGGGGAGATTTGGTGGGAACAGAACGGTGACGAAGACTGAGAA 518 |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 419 GAACTCGAATAGTAGTTGGGGGAGATTTGGTGGGAACAGAACGGTGACAAAGACTGAGAA 478 Query 519 AGTTTGCAACTTTTGGGTAGATGGGAATTGCACATACGGTGATAAGTGTAGATACTTGCA 578 ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 479 AGTTTGCAACTTTTGGGTAGATGGGAATTGCACGTACGGTGATAAGTGTAGGTACTTGCA 538 Query 579 TTGTTGGAGTAAAGGAGAGAGCTTTGCGTTGTTGACTCAGCTTGATGGTCATGAGAAGCT 638 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 539 TTGTTGGAGTAAAGGAGAGAGCTTTTCGTTGTTGACTCAGCTTGATGGTCATGAGAAGCT 598 Query 639 TGTTAGTGGTATTGCTTTGCCTTCTGGTTCTGATAAGCTTTACACTGGAAGTAAAGATGA 698 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 599 TGTTAGTGGTATTGCTTTGCCTTCTGGCTCTGATAAGCTTTACACTGGAAGTAAAGATGA 658 Query 699 GACCTTGCGTGTTTGGGATTGTGCTTCTGGACAGTGTACAGGAGTACTCAAACTTGGTGG 758 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 659 GACCTTGCGTGTTTGGGATTGTGCTTCTGGACAGTGTACAGGAGTACTTAAACTTGGTGG 718 Query 759 GGAAATTGGCTGTGTGCTTAGTGAAGGCCCGTGGCTATTAGTTGGCATGCCAAACCTTGT 818 |||| |||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| Sbjct 719 GGAAGTTGGCTGTGTGCTTAGCGAAGGCCCGTGGCTATTGGTTGGCATGCCAAATCTTGT 778 Query 819 CAAGGCGTGGAATATTGAAACCAATGCTGACCAGAGTCTAAGTGGACCTGTTGGCCAAGT 878 ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| Sbjct 779 CAAGGCGTGGAATATTGAAACCAATGCAGACCAGAGTCTAAATGGACCTGTTGGCCAAGT 838 Query 879 CTATTCTCTTGTTGTGGGTACTGATCTGCTCTTTGCTGGAACACAGGATGGCTCTATTTT 938 || ||||| ||||||||||||||||| ||||| ||||| |||||||||||||||||||| Sbjct 839 ATACTCTCTCGTTGTGGGTACTGATCTTCTCTTCGCTGGTACACAGGATGGCTCTATTTT 898 Query 939 GGCATGGAGATATAATGCTGCCACTAACTGTTTTGAACCATCAGCGTCACTGACGGGCCA 998 ||||||||||||||||||||||||||||||||| |||||| | || |||||||||||||| Sbjct 899 GGCATGGAGATATAATGCTGCCACTAACTGTTTCGAACCAGCGGCATCACTGACGGGCCA 958 Query 999 TACACTTGCAGTTGTTACCTTATATGTTGGGGCGAACAGACTTTATTCGGGTTCCATGGA 1058 ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 959 TACACTTGCAGTTGTTACCTTATATGTTGGGGCAAACAGACTTTATTCTGGTTCCATGGA 1018 Query 1059 CAAAACTATAAAAGTTTGGAGTTTGGATAATCTACAGTGTATACAAACACTCACTGATCA 1118 ||||||||||||||||||||| |||||||||| |||||||||||||||||||| || || Sbjct 1019 CAAAACTATAAAAGTTTGGAGCCTGGATAATCTGCAGTGTATACAAACACTCACGGACCA 1078 Query 1119 TTCATCAGTTGTGATGTCTCTCATTTGCTGGGATCAATTCCTTTTGTCTTGTTCATTGGA 1178 | |||||||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 1079 TACATCAGTTGTGATGTCTCTCATTTGCTGGGATCAGTTTCTTTTGTCTTGTTCATTGGA 1138 Query 1179 CAACACGGTTAAGATATGGGCTGCAATCGAAGGTGGCAATTTGGAAGTAACATATACTCA 1238 ||||||||||||||||||||||||| | |||||||| |||||||||| ||||| ||||| Sbjct 1139 CAACACGGTTAAGATATGGGCTGCAGTTGAAGGTGGAAATTTGGAAGCGACATACACTCA 1198 Query 1239 CAAAGAAGAACATGGAGTGCTAGCTCTATGTGGTGTACATGATGCAGAAGCCAAGCCTGT 1298 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1199 CAAAGAAGAACATGGAGTGCTAGCTCTATGTGGTGTACATGATGCAGAAGCCAAGCCGGT 1258 Query 1299 TTTGTTATGCGCTTGCAATGACAACACCTTGCGCCTCTACGACTTACCATCCTTAGGTTT 1358 |||||||||| ||||||||||||| |||||||||||||||||||||||||| | ||| Sbjct 1259 TTTGTTATGCTCTTGCAATGACAATACCTTGCGCCTCTACGACTTACCATC---A--TTT 1313 Query 1359 GTTCATTAGATTTACGGAGAGGGGAAAAATCTTTGCAAAGCAAGAGATACGGGCGATCCA 1418 | |||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1314 ----A---------CGGAGAGGGGGAAAATCTTTGCAAAGCAAGAGATACGGGCGATCCA 1360 Query 1419 GATAGGTCCCGGGGGCATATTTTTCACGGGTGACGGAACTGGTCAAGTTAAAGTATGGAA 1478 ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1361 GATTGGTCCTGGGGGCATATTTTTCACGGGTGACGGAACTGGTCAAGTTAAAGTATGGAA 1420 Query 1479 ATGGTGCACTGAACCAACCGCGGCTTTGCCTTGA 1512 |||||||||||||||||||||||||||||||||| Sbjct 1421 ATGGTGCACTGAACCAACCGCGGCTTTGCCTTGA 1454 > Ahg329122 jgi|Araly1|329122|fgenesh1_pm.C_scaffold_7001349 Length=2004 Score = 939 bits (508), Expect = 0.0 Identities = 969/1185 (82%), Gaps = 57/1185 (5%) Strand=Plus/Plus Query 181 ATGGATTTCGATTTGAACGGAGGAAACAA-ACGAGTC-TTCAACAGACTCGGTGGCGGTG 238 |||||||| ||| |||||||||||||||| | ||||| ||||| ||||| |||||| Sbjct 1 ATGGATTTAGATATGAACGGAGGAAACAAGA-GAGTCTTTCAA-AGACT---AAGCGGTG 55 Query 239 GCGGGTC-AACTCGTCCGATGGCACCAACGGA-TAC-AAGACAAAAGGTTTGTTTCCACT 295 || || || ||| || | | | ||||| | | || || |||||||||||||||| Sbjct 56 GC---TCGAA-TCGGCC----G-A-CGACGGACT-CGAA-TCAGAAGGTTTGTTTCCACT 103 Query 296 GGCGAGCCGGGCGTTGTAATCGTT-CTCCTTGTCCTTATCTACATCGGGAATTACCGGGT 354 ||||||| || || || ||||||| | ||||| ||||| || ||| | ||||| |||||| Sbjct 104 GGCGAGCTGGCCGGTGCAATCGTTAC-CCTTGCCCTTACCTGCATAGAGAATTGCCGGGT 162 Query 355 CCTGG-TCCGGGTCAAGGTCAAGGCCCGGGTTATACGAACAAAAGGGTCGCTGAGGAATC 413 || || |||||||| | | | | |||||| |||||||||||||| ||||| Sbjct 163 CC-GGCTCCGGGTC-----C----TTC--G-TCTACGAATAAAAGGGTCGCTGATGAATC 209 Query 414 TGGTTTCGCGGGTCCGAGTCATCGGAGAGGACCTGGGTTTAATGGGAACTCGAGTAGTAG 473 |||||| ||||| |||||||| |||||||| || || || | ||| ||| | || || Sbjct 210 TGGTTTTGCGGGCCCGAGTCACCGGAGAGGGCCAGGATTCAGCGGG-ACT-G-CTAATAA 266 Query 474 TTGGGGGAGATTTGGTGGGAACAGAACGGTGACGAAGACTGAGAAAGTTTGCAACTTTTG 533 ||||| ||||| |||||||||||||||||||||||||| |||||| ||||||| || || Sbjct 267 CTGGGGAAGATTCGGTGGGAACAGAACGGTGACGAAGACGGAGAAACTTTGCAAATTCTG 326 Query 534 GGTAGATGGGAATTGCACATACGGTGATAAGTGTAGATACTTGCATTGTTGGAGTAAAGG 593 ||| ||||| |||||| | ||||||||||| ||||||||||||||||||||||| || || Sbjct 327 GGTTGATGGAAATTGCCCTTACGGTGATAAATGTAGATACTTGCATTGTTGGAGCAACGG 386 Query 594 AGAGAGCTTT-GCGTTGTTGACTCAGCTTGATGGTCATGAGAAGCTTGTTAGTGGTATTG 652 ||| || ||| | |||||||| ||||| || || ||| ||||| |||| | ||| |||| Sbjct 387 AGATAG-TTTCTCCTTGTTGACGCAGCTAGACGGACATCAGAAGGTTGTCACTGGGATTG 445 Query 653 CTTTGCCTTCTGGTTCTGATAAGCTTTACACTG-GAAGTAAAGATGAGACCT-TGCGTG- 709 || |||| || || || |||||||||||||||| | ||||||||||| | || |||| | Sbjct 446 CTCTGCCATCAGGATCAGATAAGCTTTACACTGCG-AGTAAAGATGA-AACTGTGCG-GA 502 Query 710 TTTGGGATTGTGCTTCTGGACAGTGTACAGGAGTACTCAAACTTGGTGGGGAAATTGGCT 769 | ||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||| Sbjct 503 TATGGGATTGTGCTTCTGGACAGTGTACAGGTGTACTCAATCTTGGTGGGGAAGTTGGCT 562 Query 770 GTGTGCTTAGTGAAGGCCCGTGGCTATTAGTTGGCATGCCAAACCTTGTCAAGGCGTGGA 829 | || ||||||||||||| |||||||| |||||||||||||| ||||| |||||||||| Sbjct 563 GCATGATTAGTGAAGGCCCCTGGCTATTGGTTGGCATGCCAAATCTTGTTAAGGCGTGGA 622 Query 830 ATATTGAAACCAATGCT-GACCAGAGTCTAAGTGGACCTGTTGGCCAAGTCTATTCTCTT 888 |||| ||| ||||| | |||| |||||| | |||||||||||||||||| ||||| || Sbjct 623 ATATCCAAAACAATG-TAGACCTGAGTCTCACTGGACCTGTTGGCCAAGTATATTCA-TT 680 Query 889 G-TTGTGGGTACTGATCTGCTCTTTGCTGGAACACAGGATGGCTCTATTTTGGCATGGAG 947 | ||||||| |||||||| || || ||||| ||||| ||||| |||||||||| |||| Sbjct 681 GGTTGTGGGCACTGATCTACTGTTCGCTGGCACACAAGATGGGTCTATTTTGGTTTGGAA 740 Query 948 ATATAAT-GCTGCCACTAACTGTTTTGAACCATCAGCGTCACTGACGGGCCATACACTTG 1006 ||| ||| || |||||| ||||||||| ||| | || ||| | | |||||| || |||| Sbjct 741 ATACAATAGCA-CCACTAGCTGTTTTGATCCAGCTGCATCATTAATGGGCCACACCCTTG 799 Query 1007 CAGTTGTTACCTTATATGTTGGGGCGAACAGACTTTATTCGGGTTCCATGGACAAAACTA 1066 |||||||| | |||||||||||||| |||||||| ||||| ||| |||||||||| ||| Sbjct 800 CAGTTGTTTCTTTATATGTTGGGGCAAACAGACTCTATTCTGGTGCCATGGACAATTCTA 859 Query 1067 TAAAAGTTTGGAGTTTGGATAATCTACAGTGTATACAAACACTCACTGATCATTCATCAG 1126 ||||||||||| | |||||||||| |||||||||||||| || || || ||| | |||| Sbjct 860 TAAAAGTTTGGTGCCTGGATAATCTGCAGTGTATACAAACCCTTACAGAGCATACTTCAG 919 Query 1127 TTGTGATGTCTCTCATTTGCTGGGATCAATTCCTTTTGTCTTGTTCATTGGACAACACGG 1186 |||| ||||||||||||||||||||||| || ||| |||| ||||| |||||||| || | Sbjct 920 TTGTCATGTCTCTCATTTGCTGGGATCAGTTTCTTCTGTCATGTTCTTTGGACAATACCG 979 Query 1187 TTAAGATATGGGCTGCAA-TCGAAGGTGGCAATTTGGAAGTAACATATACTCACAAAGAA 1245 | |||||||||||||| | | |||||||| || || ||||| |||||||||||||||||| Sbjct 980 TCAAGATATGGGCTGCTACT-GAAGGTGGAAACTTAGAAGTCACATATACTCACAAAGAA 1038 Query 1246 GAACATGGAGTGCTAGCTCTATGTGGTGTACATGATGCAGAAGCCAAGCCTGTTTTGTTA 1305 ||| | || ||||||||||| |||||||| |||||||||||||||||||| || ||| || Sbjct 1039 GAATACGGCGTGCTAGCTCTCTGTGGTGTCCATGATGCAGAAGCCAAGCCAGTATTGCTA 1098 Query 1306 TGCGCTTGCAATGACAACACCTTGCGCCTCTACGACTTACCATCC 1350 || | ||||||||||| | |||| ||| || || || |||||| Sbjct 1099 TGTTCGTGCAATGACAATTCATTGCACCTTTATGATTTGCCATCC 1143 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56602104070 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5