BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G51990.1 Length=675 Score E Sequences producing significant alignments: (Bits) Value Ahg949750 jgi|Araly1|949750|scaffold_801637.1 998 0.0 > Ahg949750 jgi|Araly1|949750|scaffold_801637.1 Length=715 Score = 998 bits (540), Expect = 0.0 Identities = 635/680 (93%), Gaps = 10/680 (1%) Strand=Plus/Plus Query 1 ATGAATCCATTTTACTCTA-CATTCCCAGACTCGTTTCTCTCAATCTCCGATCATAGATC 59 |||||||| |||||||| | | ||| |||||||||||||||||||||||||| | ||||| Sbjct 21 ATGAATCCCTTTTACTC-AGCTTTCTCAGACTCGTTTCTCTCAATCTCCGATGACAGATC 79 Query 60 TCCGGTTTCAGACAGTAGTGAGTGTTCACCAAAGTTAGCTTCAAGTTGTCCAAAGAAACG 119 ||||||||| |||||||||||||||||||| ||||||||||| |||||||| |||||||| Sbjct 80 TCCGGTTTCGGACAGTAGTGAGTGTTCACCGAAGTTAGCTTCGAGTTGTCCTAAGAAACG 139 Query 120 AGCTGGGAGGAAGAAGTTTCGTGAGACACGTCATCCGATTTACAGAGGAGTTCGTCAGAG 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 140 AGCTGGGAGGAAGAAGTTTCGTGAGACACGTCATCCGATTTACAGAGGAGTTCGTCAGAG 199 Query 180 GAATTCTGGTAAATGGGTTTGTGAAGTTAGAGAGCCTAATAAGAAATCTAGGATTTGGTT 239 ||||||||||||||||||||||||||| || || || ||||||||||||||||||||||| Sbjct 200 GAATTCTGGTAAATGGGTTTGTGAAGTGAGGGAACCGAATAAGAAATCTAGGATTTGGTT 259 Query 240 AGGTACTTTTCCGACGGTTGAAATGGCTGCTCGTGCTCATGATGTTGCTGCTTTAGCTCT 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 260 AGGTACTTTTCCGACGGTTGAAATGGCTGCTCGTGCTCATGATGTTGCTGCTTTAGCTCT 319 Query 300 TCGTGGTCGCTCTGCTTGTCTCAATTTCGCTGATTCTGCTTGGCGGCTTCGTATTCCTGA 359 ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| Sbjct 320 CCGTGGTCGCTCTGCTTGTCTCAATTTCGCTGATTCGGCTTGGAGGCTTCGTATTCCTGA 379 Query 360 GACTACTTGTCCTAAGGAGATTCAGAAAGCTGCGTCTGAAGCTGCAATGGCGTTTCAGAA 419 |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| Sbjct 380 GACTACTTGTCCTAAGGAGATTCAGAAAGCGGCGGCTGAAGCTGCAATGGCGTTTCAGAA 439 Query 420 TGAGACTACGACGGAGGGATCTAAAACTGCGGCggaggcagagg---aggcggcagggga 476 ||||| || ||||||||||||||||||||||||||||| |||| ||||||| ||||| Sbjct 440 TGAGAGTATGACGGAGGGATCTAAAACTGCGGCGGAGGTGGAGGCGGAGGCGGCTGGGGA 499 Query 477 gggggtgagggagggggagaggagggcggaggagCAGAATGGTGGTGTGTTTTATATGGA 536 ||||| ||||||| |||||||||||| ||||||||||| | | |||||||||||||||| Sbjct 500 GGGGGAGAGGGAGAGGGAGAGGAGGGTGGAGGAGCAGA--G-TAGTGTGTTTTATATGGA 556 Query 537 TGATGAGGCGCTTTTGGGGATGCCCAACTTTTTTGAGAATATGGCGGAGGGGATGCTTTT 596 ||| |||||| ||||||||||||| | ||||||||||||||||||||||||||||||||| Sbjct 557 TGAAGAGGCGGTTTTGGGGATGCCGACCTTTTTTGAGAATATGGCGGAGGGGATGCTTTT 616 Query 597 GCCGCCGCCGGAAGTTGGCTGGAATCATAACGACTTTGACGGAG-TGGGTGACGTGTCAC 655 ||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||| Sbjct 617 GCCGCCGCCGGAAATTGGCTGGAATCATAACGACTTTGACGGAGATGC-TGACGTGTCAC 675 Query 656 TCTGGAGTTTTGACGAGTAA 675 |||||||||| ||||| ||| Sbjct 676 TCTGGAGTTTCGACGATTAA 695 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24779896050 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5