BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52010.1
Length=1503
Score E
Sequences producing significant alignments: (Bits) Value
Ahg357440 jgi|Araly1|357440|fgenesh1_pg.C_scaffold_8001227 1507 0.0
> Ahg357440 jgi|Araly1|357440|fgenesh1_pg.C_scaffold_8001227
Length=1017
Score = 1507 bits (816), Expect = 0.0
Identities = 955/1021 (94%), Gaps = 14/1021 (1%)
Strand=Plus/Plus
Query 350 ATGGTAAGAAACAAAGAAGGTATCTTTGCACCAAAGGAGAAGAAAGTTGTAGTCTTATGG 409
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGTAAGAAACAAAGAAGGTATCTTTGCACCAAAGGAGAAGAAAGTTGTAGTCTTGTGG 60
Query 410 GACTTAGACAACAAACCACCACGAGGTCCACCATACGAAGCCGCAACAGCTCTCCGTAAA 469
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 61 GACTTAGACAACAAACCACCACGAGGTCCACCGTACGAAGCAGCAACAGCTCTCCGTAAA 120
Query 470 GTCGCTGAGAAACTCGGCCGAGTCGTCGAAATCTCCGCTTACGCAAATCGTCATGCTTTT 529
|| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 121 GTGGCGGAGAAACTCGGCCGAGTCGTTGAAATCTCCGCTTACGCAAATCGTCATGCTTTT 180
Query 530 ATCCATTTACCTCATTGGGTCGTCGAAGAGAGACGAGAAAGGAGGAACCTTGATTTCATG 589
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 181 ATCCATTTACCTCATTGGGTCGTCGAAGAGAGACGTGAAAGGAGGAATCTTGATTTCATG 240
Query 590 GAGAGGAAAGGAGAAGTGACTCCAATTGATCCGTACATTTGTGGTGTTTGTGGTCGCAAG 649
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 241 GAGAGGAAAGGAGAAGTGACTCCAATTGATCCCTACATTTGTGGTGTTTGTGGTCGGAAG 300
Query 650 TGTAAAACCAATCTTGATTTGAAGAAACATTTCAAGCAGCTTCATGAGAGGGAGAGACAG 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TGTAAAACCAATCTTGATTTGAAGAAACATTTCAAGCAGCTTCATGAGAGGGAGAGACAG 360
Query 710 AAGAAAGTTAATAGGATGAGATCTTTGAAAGGTAAGAAACGTCAGAAGTTTAAGGAGCGT 769
|||||||| ||||||||||||||||||||||||||||| |||||||||||||| || |||
Sbjct 361 AAGAAAGTGAATAGGATGAGATCTTTGAAAGGTAAGAAGCGTCAGAAGTTTAAAGAACGT 420
Query 770 TATGTTTCAGGGAATGAGAAGTATAATGAGGCTGCGAGGAGTTTGTTGACTCCTAAAGTT 829
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 421 TATGTTTCAGGGAATGAGAAGTATAATGAGGCGGCGAGGAGGTTGTTGACTCCTAAAGTT 480
Query 830 GGATATGGTTTAGAGGCTGAGCTACGTCGAGCAGGGGTTTATGTTAAGACGGTTGAGGAT 889
|||||||| |||||||| |||||||||||||| ||||||||||| |||||||| ||||||
Sbjct 481 GGATATGGCTTAGAGGCGGAGCTACGTCGAGCGGGGGTTTATGTGAAGACGGTGGAGGAT 540
Query 890 AAGCCTCAGGCTGCGGATTGGGCGGTTAAGAGACAGATACAACATTCAATGACTAGAGGG 949
||||| ||||| |||||||||||||| |||||||||||||| ||||| ||||| || |||
Sbjct 541 AAGCCACAGGCGGCGGATTGGGCGGTGAAGAGACAGATACAGCATTCGATGACGAGGGGG 600
Query 950 ATTGATTGGTTGGTTTTGGTGTCGGATGATAAGGATTTTTCTGATATGTTGAGGAAAGCT 1009
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct 601 ATTGATTGGTTGGTTTTGGTATCGGATGATAAGGATTTTTCGGATATGTTGAGGAAGGCT 660
Query 1010 AGAGAGGCTGATCTTGGGACTTTGGTTGTTAGTGATATGGATAGAGCATTGGGAAGGCAT 1069
|| ||||||||||||||||||||||| |||||||||| ||||||||| |||||| |||||
Sbjct 661 AGGGAGGCTGATCTTGGGACTTTGGTGGTTAGTGATAGGGATAGAGCGTTGGGACGGCAT 720
Query 1070 GCTGATTTGTGGGTGCCTTGGAGTGGTGTTGAGAAGGGAGAGATTGGTGAGAAGGATTTG 1129
|||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct 721 GCTGATTTGTGGGTGCCTTGGAGTGGAGTTGAGAATGGAGAGATTGGGGAGAAGGATTTG 780
Query 1130 ATTCCGGGGAAGAGACCAAGGTTTGAGGAGGATG---AG-GTG-GG----ATTTGGTGGT 1180
||||||||||||||||| ||||||||||||||| || ||| || |||| | |||
Sbjct 781 ATTCCGGGGAAGAGACCGCGGTTTGAGGAGGATGCGGAGAGTGAGGTGGGATTTAGCGGT 840
Query 1181 A-ATGATGAGTTGTTTTCGTTGTCGTATGATGAGGATGAGAAGGCGGAGATGACGGTGGA 1239
| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 841 GGA-GATGAGTTGTTTTCGTTGTCTTATGATGAGGATGAGAGGGCGGAGATGACGGTGGA 899
Query 1240 GAGTGATGGGTTTGGGAGGTTTAATGTATCGGCGTTTTCGGAAGATGAATGGGTGGAGGA 1299
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 900 GAGTGATGGATTTGGGAGGTTTAATGTATCGGCGTTTTCGGAAGATGAATGGGTAGAGGA 959
Query 1300 TGAAGGAGACTTTGTGTTGAGTGATAGTAGTGATGATGATAGTGATGATGAGCTTTTCTG 1359
|||||||||||||| |||||||||||| | ||||||||||||| |||||||| |||||
Sbjct 960 TGAAGGAGACTTTGCATTGAGTGATAGT-G--ATGATGATAGTGACGATGAGCTCTTCTG 1016
Query 1360 A 1360
|
Sbjct 1017 A 1017
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56259291865
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5