BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52040.2
Length=1426
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495275 jgi|Araly1|495275|fgenesh2_kg.8__1091__AT5G52040.2 2106 0.0
Ahg492278 jgi|Araly1|492278|fgenesh2_kg.7__1711__AT4G25500.1 737 0.0
> Ahg495275 jgi|Araly1|495275|fgenesh2_kg.8__1091__AT5G52040.2
Length=1330
Score = 2106 bits (1140), Expect = 0.0
Identities = 1263/1322 (96%), Gaps = 10/1322 (1%)
Strand=Plus/Plus
Query 113 AGGAATCATGAAGCCTGTCTTTTGCGGAAACTTTGAGTATGATGCTCGTGAGAGTGATCT 172
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 11 AGGAAACATGAAGCCTGTCTTTTGCGGGAACTTTGAGTATGATGCTCGTGAGAGTGATCT 70
Query 173 TGAGCGGCTTTTCAGAAAG-TACGGCAAGGTTGAGAGGGTTGATATGAAAGCTGGGTTTG 231
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 71 TGAGCGGCTTTTCA-AAAGATACGGCAAGGTTGAGAGGGTTGATATGAAAGCTGGGTTTG 129
Query 232 CTTTTGTCTATATGGAAGATGAAAGGGATGCTGAAGATGCAATTCGAGCGCTTGATCGCT 291
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 130 CTTTTGTCTATATGGAAGATGAAAGGGATGCTGAAGATGCCATCCGAGCGCTTGATCGCT 189
Query 292 TTGAATATGGTCGCACAGGACGCAGACTCCGTGTTGAGTGGACAAAGAATGACCGTGGAG 351
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 TTGAATATGGCCGCACGGGACGCAGACTCCGTGTTGAGTGGACAAAGAATGACCGTGGAG 249
Query 352 GTGCTGGAAGATCAGGTGGTTCGAGGAGATCATCTTCTGGCTTGAGACCTTCCAAGACTC 411
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 250 GTGCTGGAAGATCAGGTGGTTCGAGGAGATCATCGTCTGGCATGAGACCTTCCAAGACTC 309
Query 412 TGTTTGTGATCAACTTCGATGCACAAAACACTAGGACTCGGGACTTGGAGAGGCACTTTG 471
|||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||
Sbjct 310 TGTTTGTGATCAACTTTGATGCACAGAACACTAGGACTCGGGACTTGGAGAGACACTTTG 369
Query 472 AGCCGTATGGTAAAATTGTTAATGTTAGAATCAGAAGGAATTTTGCATTCATCCAATATG 531
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 370 AGCCGTATGGAAAAATTGTTAATGTTAGAATCAGAAGGAATTTTGCATTTATCCAATATG 429
Query 532 AGGCACAAGAAGATGCTACCAGAGCACTGGATGCTACAAATTCCAGTAAGCTGATGGATA 591
|| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 430 AGTCACAAGAAGATGCCACCAGAGCACTGGATGCTACAAATTCAAGTAAGCTGATGGATA 489
Query 592 AGGTGATCTCAGTGGAGTATGCAGTGAAAGATGATGATTCAAGAGGAAATGGATACAGTC 651
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 490 AGGTGATCTCAGTGGAGTATGCAGTGAAAGATGATGATTCGAGAGGAAATGGGTACAGTC 549
Query 652 CTGAAAGACGGCGTGATAGGTCACCTGATAGGAGAAGGCGATCACCAAGTCCTTACAGAA 711
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 550 CTGAAAGACGGCGTGATAGGTCACCTGATAGGAGAAGGCGGTCACCTAGTCCTTACAGAA 609
Query 712 GAGAAAGGGGAAGTCCTGACTATGGCCGAGGTGCTAGTCCAGTAGCTCACAAAAGGGAAA 771
||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 610 GAGAAAGAGGCAGTCCTGACTATGGCCGAGGAGCTAGTCCAGTAGCTCACAAAAGGGAAA 669
Query 772 GGACTAGTCCTGATTATGGTCGTGGAAGACGCAGCCCCAGCCCTTACAAGAGAGCCAGGC 831
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 670 GGACTAGTCCTGATTATGGTCGAGGACGACGCAGCCCCAGCCCTTACAAGAGAGCCAGGC 729
Query 832 TTAGCCCAGATTACAAGAGGGATGACCGTAGGAGGGAGAGAGTGGCTAGCCCAGAGAATG 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 730 TTAGCCCAGATTACAAGAGGGATGACCGTAGGAGGGAGAGAGTGGCTAGCCCAGAGAATG 789
Query 892 GAGCTGTAAGGAACCGAAGCCCAAGAAAAGGACGTGGTGAAAGCAGGAGTCCTCCTCCAT 951
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 790 GAGCTGTAAGGAACCGAAGTCCAAGAAAAGGACGTGGTGAAAGCAGGAGTCCTCCCCCAT 849
Query 952 ATGAGAAGAGGAGGGAAAGCAGGAGTCCTCCGCCATATGAGAAGAGAAGGGAAAGCAGGA 1011
|||||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||
Sbjct 850 ATGAGAAGAGGAGGGAGAGCAGGAGTCCTCCTCCATATGAGAAGAGGAGAGAAAGCAGGA 909
Query 1012 GTCCTCCTCCATATGAGAAGAGGAGGGAGAGGTCAAGGTCAAGGTCGAAGTCAAGCCCTG 1071
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 910 GTCCTCCTCCATATGAGAAGAGGAGGGAGAGATCAAGGTCAAGGTCAAAGTCAAGCCCTG 969
Query 1072 AGAATGGTCAAGTTGAGAGCCCTGGGCAAATAATGGAAGTAGAAGCTGGAAGAGGATACG 1131
|||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 970 AGAATGGTCAAGTTGAAAGCCCTGGACAAATAATGGAAGAAGAAGCTGGAAGAGGATACG 1029
Query 1132 ATGGAGCAGACAGCCCGATACGCGAGAGCAGCCCCTCTCGTTCGCCGCCAGCAGAGGAAT 1191
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1030 ATGGTGCAGACAGCCCGATACGCGAGAGCAGCCCCTCTCGTTCGCCTCCAGCAGAGGAAT 1089
Query 1192 GATTGGAGATGCAGACAGATGATTGTGTTGGATTCACAAACAAAAGATGTCTCTCAAAGT 1251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1090 GATTGGAGATGCAGACAGATGATTGTGTTGGATTCACAAACAAAAGATGTCTCTCAAAGT 1149
Query 1252 AGTTGTATCCGAAACTGAAGTCTTTTGCTATGTCATGT--AGTATTT-AGTGTGTTATTT 1308
|| |||||| ||| || |||||||||| |||||||||| ||||||| |||||||| ||
Sbjct 1150 AGCTGTATCTGAA-CTCAAGTCTTTTGTTATGTCATGTTTAGTATTTTAGTGTGTTCCTT 1208
Query 1309 TGGGTCTTT-GTTAAGTG-TTTTGTAAACTTTATTATGACTCCATTCGAAATCGCTTGTC 1366
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1209 TGGGTCTTTCGTTAAGTGCTTTTGTAAACTTTATTATGACTCCATTCGAAATCGCTTGTC 1268
Query 1367 GTAGTATTGGTTAAAAGATTGCTTTTTAGTTTGGATTACA--ATATCCGACTTTAGATGT 1424
|||||||||||||||| ||||||| ||| |||||||||| ||||| ||||||||||||
Sbjct 1269 GTAGTATTGGTTAAAAAATTGCTTCTTATTTTGGATTACTCTATATCTGACTTTAGATGT 1328
Query 1425 TT 1426
||
Sbjct 1329 TT 1330
Score = 115 bits (62), Expect = 8e-25
Identities = 68/71 (96%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 966 GAAAGCAGGAGTCCTCCGCCATATGAGAAGAGAAGGGAAAGCAGGAGTCCTCCTCCATAT 1025
||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||
Sbjct 828 GAAAGCAGGAGTCCTCCCCCATATGAGAAGAGGAGGGAGAGCAGGAGTCCTCCTCCATAT 887
Query 1026 GAGAAGAGGAG 1036
|||||||||||
Sbjct 888 GAGAAGAGGAG 898
Score = 115 bits (62), Expect = 8e-25
Identities = 68/71 (96%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 933 AGCAGGAGTCCTCCTCCATATGAGAAGAGGAGGGAAAGCAGGAGTCCTCCGCCATATGAG 992
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 867 AGCAGGAGTCCTCCTCCATATGAGAAGAGGAGAGAAAGCAGGAGTCCTCCTCCATATGAG 926
Query 993 AAGAGAAGGGA 1003
||||| |||||
Sbjct 927 AAGAGGAGGGA 937
Score = 71.3 bits (38), Expect = 2e-11
Identities = 38/38 (100%), Gaps = 0/38 (0%)
Strand=Plus/Plus
Query 930 GAAAGCAGGAGTCCTCCTCCATATGAGAAGAGGAGGGA 967
||||||||||||||||||||||||||||||||||||||
Sbjct 900 GAAAGCAGGAGTCCTCCTCCATATGAGAAGAGGAGGGA 937
> Ahg492278 jgi|Araly1|492278|fgenesh2_kg.7__1711__AT4G25500.1
Length=1197
Score = 737 bits (399), Expect = 0.0
Identities = 618/722 (86%), Gaps = 21/722 (3%)
Strand=Plus/Plus
Query 113 AGGAATCATGAAGCCTGTCTTTTGCGGAAACTTTGAGTATGATGCTCGTGAGAGTGATCT 172
||||| ||||||||| ||||| || || || |||||||||||||| |||||| |||||||
Sbjct 51 AGGAAGCATGAAGCCAGTCTTCTGTGGGAATTTTGAGTATGATGCACGTGAGGGTGATCT 110
Query 173 TGAGCGGCTTTTCA-GAAAGTACGGCAAGGTTGAGAGGGTTGATATGAAAGCTGGGTTTG 231
|| || ||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 111 CGAACGCCTTTTCAGGAAA-TACGGCAAGGTTGAGAGGGTTGATATGAAAGCTGGGTTTG 169
Query 232 CTTTTGTCTATATGGAAGATGAAAGGGATGCTGAAGATGCAATTCGAGCGCTTGATCGCT 291
||||||| || ||||||||||||||||||||||||||||| || ||||| ||||| || |
Sbjct 170 CTTTTGTGTACATGGAAGATGAAAGGGATGCTGAAGATGCCATCCGAGCCCTTGACCG-T 228
Query 292 -TTGAATATGGTCGCACAGG-ACGCAGACTCCGTGTTGAGTGGACAAAGAATGACCGTGG 349
|||||| ||| || | ||| ||| ||||| |||||||| ||||| |||| ||| |||||
Sbjct 229 ATTGAATTTGGGCGTA-AGGGACGAAGACTTCGTGTTGAATGGACTAAGAGTGAACGTGG 287
Query 350 AGGTGCTGGAAGATCAGGTGG---TTCGAGGAGATCATCTTCTGGCTTGAGACCTTCCAA 406
||||| | ||||||| ||||| ||| |||||||| || || || |||||||||||||
Sbjct 288 AGGTGATAGAAGATCTGGTGGCGGTTCAAGGAGATCCTCATCCAGCATGAGACCTTCCAA 347
Query 407 GACTCTGTTTGTGATCAACTTCGATGCACAAAACACTAGGACTCGGGA-CTTGGAGAGGC 465
|||||| |||||||| ||||| ||||| | || |||||||| ||||| || | |||| |
Sbjct 348 GACTCTCTTTGTGATTAACTTTGATGCGGATAATACTAGGACCCGGGATCTAG-AGAGAC 406
Query 466 ACTTTGAGCCGTATGGTAAA-ATTGTTAATGTTAGAATCAGAAGGAATTTTGCATTCATC 524
|||||||||||||||| ||| || || || ||||| ||||| |||||||| ||||| |||
Sbjct 407 ACTTTGAGCCGTATGG-AAAGATCGTAAACGTTAGGATCAGGAGGAATTTCGCATTTATC 465
Query 525 CAATATGAGGCACAAGAAGATGCTACCAGAGCACTGGATGCTACAAATTCCAGTAAGCTG 584
||||||||||||||||| ||||| || ||||||||||| ||||||||| ||||||||||
Sbjct 466 CAATATGAGGCACAAGAGGATGCCACAAGAGCACTGGACGCTACAAATAACAGTAAGCTG 525
Query 585 ATGGATAAGGTGATCTCAGTGGAGTATGCAGTGAAAGATGATGATTCAAGAGGAAATGGA 644
||||||||||||||||| ||||||||||| ||||| ||||||||| | ||||| ||||||
Sbjct 526 ATGGATAAGGTGATCTCGGTGGAGTATGCGGTGAAGGATGATGATGCTAGAGGGAATGGA 585
Query 645 TACAGTCCTGAAAGACGGCGTGATAGGTCACCTGATAGGAGAAGGCGATCACCAAGTCCT 704
|||||||||||||||| ||||||||||||||||| ||||||||||| ||||| ||||||
Sbjct 586 CACAGTCCTGAAAGACGCCGTGATAGGTCACCTGAAAGGAGAAGGCGGTCACCTAGTCCT 645
Query 705 TACAGAAGAGAAAGGGGAAGTCCTGACTATGGCCGAGGTGCTAGTCCAGTAGCT-C--AC 761
|||| ||||||||| ||||| ||||| |||||||||||||||||||| || ||| | ||
Sbjct 646 TACAAAAGAGAAAGAGGAAGCCCTGATTATGGCCGAGGTGCTAGTCCTGTTGCTGCCTAC 705
Query 762 A-AAAGGGAAAGGACTAGTCCTGATTATGGTCGTGGAAGACGCAGCCCCAGCCCTTACAA 820
| ||||| ||| || |||||||| |||||||| |||||| |||| || ||||||||
Sbjct 706 AGAAAGGAAAAA-ACCAGTCCTGACTATGGTCG---AAGACGTAGCCAAAGTCCTTACAA 761
Query 821 GA 822
||
Sbjct 762 GA 763
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53326343000
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5