BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52120.1
Length=1282
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949767 jgi|Araly1|949767|scaffold_801654.1 1411 0.0
> Ahg949767 jgi|Araly1|949767|scaffold_801654.1
Length=904
Score = 1411 bits (764), Expect = 0.0
Identities = 863/910 (95%), Gaps = 9/910 (1%)
Strand=Plus/Plus
Query 145 TATCATCTAATCTTTACCAATATATGGGGGCGGCTTCATCGAGCATCGTC-CGATCCGAA 203
||||||| |||||| | || |||||||||||||||||||||||||| | |||| |||
Sbjct 1 TATCATCCGATCTTT--C-ATCTATGGGGGCGGCTTCATCGAGCATCG-CTGGATCAGAA 56
Query 204 CCTTTTGCCGGAAAGTTATGCGGCCTCGAAGATGTGCCTGAGAACTGTATAACAGCAATG 263
||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||
Sbjct 57 CCTTTTGCCGGAAAGTTATGCGGTCTCGAAGATGTGCCTGAGAACTGTGTAACGGCAATG 116
Query 264 TTCATGTACATGGAGCCACCGGAGATCTGCCTGCTTGCTAGGGTAAATAAATCATTTCAT 323
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 117 TTCATGTACATGGAGCCACCGGAGATCTGCCTACTTGCTAGGGTAAATAAGTCATTTCAT 176
Query 324 AGGGCGTCGAGATCCGATGCCGTGTGGGAAGACAAGCTTCCTAGTAACTACAAGTTTCTG 383
|||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||
Sbjct 177 AGGGCGTCGAGATCCGATGCGGTGTGGGAACACAAGCTTCCTCCTAACTACAAGTTTCTG 236
Query 384 GTCCGAAGAATTCTTGAAGATCAACAACAAGTAGGAGTAAAAGACAAACTTATTTA-CCG 442
||||||||||||||||||||||||||||||||||||| |||||| ||||||| | | |||
Sbjct 237 GTCCGAAGAATTCTTGAAGATCAACAACAAGTAGGAGAAAAAGAAAAACTTA-TCATCCG 295
Query 443 CAAGAAAGAGATCTATGCAAGGCTTTGCCGACCAAACCTCTTCGACACCGGCACAAAGGA 502
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 296 CAAGAAAGAGATCTATGCAAGGCTTTGCCGACCAAACCTCTTCGACGCCGGCACAAAGGA 355
Query 503 AGCATGGTTGGACAAGAGAAGTGGGAAAGTGTTTTTGGCGATATCACCAAAGGCAATGAA 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 AGCATGGTTGGACAAGAGAAGTGGGAAAGTGTTTTTGGCGATATCACCAAAGGCAATGAA 415
Query 563 GATAACCGGCATTGATGATCGCCGATATTGGGAACATATTTCTTCCGATGAATCCAGATT 622
| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 416 GGTAACCGGCATTGATGATCGCCGATATTGGGAACATATTTCTTCTGACGAATCCAGATT 475
Query 623 TGGATCAATAACTTATCTCCGGCAAATATGGTGGTTAGAAGCAGTTGGAAAAATCAGATT 682
|||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 476 TGGATCTATGGCTTATCTCCGGCAAATATGGTGGTTAGAAGCAGTTGGGAAAATCAGATT 535
Query 683 CGAATTTGCACCCGGAAAATACAGTTTACT-TTTCAAGATACAATTAGGCAAACCTATTA 741
||||||| |||||||||||||||||||| | |||||||||||||||||| ||||||||||
Sbjct 536 CGAATTTTCACCCGGAAAATACAGTTTA-TATTTCAAGATACAATTAGGAAAACCTATTA 594
Query 742 GAAAGTGTGGGAGGAAAACATGTAGTTTGGACCAAGTTCATGGCTGGGACATCAAACCGG 801
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 595 GAAAGTGTGGGAGGAAAACATATAGTTTGGACCAAGTTCATGGCTGGGATATCAAACCGG 654
Query 802 TCCGGTTTCAGTTGTCTACATCGGATGGCCAATGCGCTATGTCGGAACGACATTTGGATG 861
|||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||| |
Sbjct 655 TCCGGTTTCAATTGTCTACATCGGATGGCCAATGCGCTATGTCGGAACGGCATCTGGACG 714
Query 862 AGTCGGGGAGGTGGGTTTATCATCATGCGGGTGACTTCGTCGTAGAGAATCAGAACTCAC 921
| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 715 AACCGGGGAGGTGGGTTTATCATCACGCGGGTGACTTCGTCGTAGAGAATCAGAACTCAC 774
Query 922 CCGTTTGGGTCAAATTCTCTATGCTCCAGATAGATTGTACACATACCAAAGGTGGTTTAT 981
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 775 CCGTTTGGGTCAAATTCTCTATGCTCCAGATAGATTGTACACATACCAAAGGTGGGTTAT 834
Query 982 GTTTAGATTGTGTGATCATATGTCCATTTGAGTATAGAGGGAAATACAAATATTCCGATT 1041
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 835 GTTTAGATTGTGTGATCATATGTCCATTTGAGTATATAGGGAAATACAAATATTCCGATT 894
Query 1042 AAATGTTTTT 1051
||||||||||
Sbjct 895 AAATGTTTTT 904
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47920506669
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5