BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52230.1
Length=2625
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495292 jgi|Araly1|495292|fgenesh2_kg.8__1108__AT5G52230.1 1615 0.0
> Ahg495292 jgi|Araly1|495292|fgenesh2_kg.8__1108__AT5G52230.1
Length=2406
Score = 1615 bits (874), Expect = 0.0
Identities = 1266/1444 (88%), Gaps = 72/1444 (5%)
Strand=Plus/Plus
Query 1189 TGAACCGACGCTTGAACTGAAGACAAGAACCAAAGTTCAACGAATATTACCTCCTGATGA 1248
|||||| |||| |||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1005 TGAACCAACGCCTGAACTGAAGACAAGAACCAAAGTTCAACGAATAGTGCCTCCTGATGA 1064
Query 1249 TGAACTGACGCCCGAACTGAAGTCAAGAACCAAAGTTCAACGAATAGTACCTCCTGATGA 1308
||||| ||||| || || | ||| | | ||| ||| || ||| | | | ||
Sbjct 1065 TGAACCAACGCCTGATCT---G--AAG-A-C-AAG---AACCAA-AGT---T-C-AACGA 1107
Query 1309 TGAACTGA-CGCCTGAATTTAAGACGAGAACCAAAGTACAACAAAGAATACCTCCTGATG 1367
| | | | | |||| | | || ||| || | | ||| || | ||||||||||||
Sbjct 1108 -GTAGT-ACCTCCTG-A--T--GATGAG--CC---G-A-AACGAATATTACCTCCTGATG 1153
Query 1368 ATGGCAGAGCCGGAAAGTGCAAGCAACCTGTGAATCATGTTACTACCAGCGGA-TCAAAA 1426
|||||| ||| ||||||||||||||||||||||||| |||| ||||||||||| | |||
Sbjct 1154 ATGGCACAGCTGGAAAGTGCAAGCAACCTGTGAATCCTGTTGCTACCAGCGGATTGGAAA 1213
Query 1427 AAGACGGAAATACCGC-TCAACAAGGAAGTAGCCCAAAGCTGTAATGAACAATC-CTCTC 1484
|| | ||| ||||| | ||||||||||||||||| |||||| |||||||| ||| |||||
Sbjct 1214 AA-ATGGATATACC-CTTCAACAAGGAAGTAGCCAAAAGCTATAATGAAC-ATCGCTCTC 1270
Query 1485 AGAAACCACATGCTGCTGCTGCAACAAGCAACAATCGTGTGAGTGCAG-ATTCGGCAGTG 1543
|||||||| |||||| ||||| |||||||||||||||||||| ||| | | || ||||
Sbjct 1271 AGAAACCATATGCTGTTGCTG---CAAGCAACAATCGTGTGAGTCCAGAAAT-GGTAGTG 1326
Query 1544 GGAATACAAAATATCGGTAAAGCAGTAGGCAGGAAGCCTTCTAAAGACAAGAAGACGCTG 1603
|||| |||||||||||||||| |||||||||| ||||||||| |||||||||||| ||
Sbjct 1327 GGAACACAAAATATCGGTAAACCAGTAGGCAGAAAGCCTTCTTCAGACAAGAAGACAATG 1386
Query 1604 AAATCACCACTGATAGTATATGAACTGAATCCAGTTTTTCATCTTGACGGTTACAAGCAG 1663
||| | ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1387 AAAACGCCAATGATAGTATATGAACTGAATCCAGTTTTTCATCTTGAGGGTTACAAGCAG 1446
Query 1664 AAGGAAGAAATGTCACCTGTGTCACCGTTGTCTTGCCAAACTTCTGCAACAAAGTGTGAG 1723
|||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1447 AAGGAAGAAAGGTCGCCCGTGTCACCGTTGTCTTGCCAAACTTCTGCAACAAAGTGTGAG 1506
Query 1724 AAGACAGCAGCAGGCAAAAGAGTGGGAAGGTCTAGCCCAAAGGCTAACCTTACTACCAGT 1783
||||||||||||||||||||| ||||| ||||||| ||||||||||| ||||||||||||
Sbjct 1507 AAGACAGCAGCAGGCAAAAGATTGGGACGGTCTAGTCCAAAGGCTAAACTTACTACCAGT 1566
Query 1784 GTGAAACCAACTCAGATCTCGCCTCTGAGATCACCAAATAAAGGAAAGCAACCACATCCT 1843
|||||||||||||||||||||||| |||||||| |||||||||||||||| || ||||||
Sbjct 1567 GTGAAACCAACTCAGATCTCGCCTTTGAGATCATCAAATAAAGGAAAGCATCCGCATCCT 1626
Query 1844 TCTGACAGTGGTTCTGCCATTCAAAGGAGAAATAAACTAGCTAATGAGT-ATTCTAACTC 1902
||||| |||||| ||| ||||||| |||||||||| ||| ||| |||| || |||||||
Sbjct 1627 TCTGATAGTGGTAATGCTATTCAAACGAGAAATAAATTAGGTAACGAGTTAT-CTAACTC 1685
Query 1903 ATCCGTTGTAAGAGGCACATGCTCAGAAGTGATGGAGAAGAGTACCAACAGCTTCTCCTC 1962
||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 1686 ATCTGTTGTAAAAGGCACATGCTCAGAAGTGATGGAGAAGAATACCAACAGCTTCTCATC 1745
Query 1963 TGCATTTGACTCGACTCTTGCAGATCTTTGTAAAGATCCTTGCATTGCCTTTGCTATCAA 2022
||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1746 CGCATTTGACTCTACTCTTGCAGATCTTTGGAAAGATCCTTGCATCGCCTTTGCTATCAA 1805
Query 2023 AACTCTAACCGGAGAATCTCTGTGTCTTCTCAACACTCCAGCGATCTCTTCTAATCCCAT 2082
||| || || |||||||| ||||| |||| |||||| ||||||||||||||| |||||||
Sbjct 1806 AACACTGACTGGAGAATCGCTGTGCCTTCCCAACACGCCAGCGATCTCTTCTGATCCCAT 1865
Query 2083 TAACAACCACACCAAGCAGAAAGGAGTCTCCTTTACCCCAGAGAC-TCCAGGAAATGTTA 2141
||| || ||| ||||||||||||||||||||| || ||||||||| ||||| ||||||||
Sbjct 1866 TAATAATCACGCCAAGCAGAAAGGAGTCTCCTCTATCCCAGAGACGTCCAG-AAATGTTA 1924
Query 2142 ACACATGCTCTGAAAAACTGGTATTTCCGAGTCCACCCCCGGGTGCAAATATCTGGCAAG 2201
||||| |||||||||| | || |||||||||| ||| ||||||| || ||||||||||||
Sbjct 1925 ACACAGGCTCTGAAAACCAGGGATTTCCGAGTACACTCCCGGGTACAGATATCTGGCAAG 1984
Query 2202 ACCCGTGTATCGACTTTGCTATAAAAACTCTAACAGGCGCAATCCCGATCGGGTTAGATG 2261
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1985 ACCCGTGTATCGACTTTGCTATAAAAACCCTGACAGGCGCAATCCCGATCGGGTTAGATG 2044
Query 2262 AACCAGATACGAAGTCAAAGTCAC-AGGGGATGACGTCTA-CTACAGCAGCAACACAAGA 2319
|||||||||| ||||||||||| | ||||||||||| || ||||||||||||| |||||
Sbjct 2045 AACCAGATACCAAGTCAAAGTC-CGAGGGGATGACGA-TAACTACAGCAGCAACGCAAGA 2102
Query 2320 AGCTAAAGGTAGGCAAAACAACTGTGATTATATG----A-C---G-AACA--A-GA-C-- 2364
|||||||||||||||||||||||||||||||||| | | | |||| | || |
Sbjct 2103 AGCTAAAGGTAGGCAAAACAACTGTGATTATATGGTTCAACAATGTAACATGAAGAACAA 2162
Query 2365 ---TG-TAGGTAAACCTGATGATCTAAGGTTTACACAATCTTTCTCTAAGGACTAACAAG 2420
|| | ||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 2163 GACTGCT-GGTAAACCTCAGGATCTAAGGTTTACACAATCTTTCTCTAAGGACTAACAAT 2221
Query 2421 AACAAAATAAAGCCTACTGTACTTTTAGGTGTTTTCGTATATTAGGGTTTTTGATAATGC 2480
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2222 AACAAAATAAAACCTAGTGTACTTTTAGGTGTTTTCGTATATTAGGGTTTTTGATAATGC 2281
Query 2481 CATTGGTATCGTGT-AAGATCCATGTGCAATGCCTTAGCTTTATTTTCTTTCGGGCCATG 2539
||| ||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2282 CATGGGTATAGTGTTAAGATCCATGTGCAATGCCTTAGCTTTATTTTCTTTCGGGTCATG 2341
Query 2540 TTCTGTTGTAAATACATATGTATTAGTGTTGTGTATCGACAGAACCTTGAAAAACTCATA 2599
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2342 TTCTGTTGTAAATACATATGTATTAGTGTTGTGTATCGACAGAACCTGGAAAAACTCATA 2401
Query 2600 AAAA 2603
||||
Sbjct 2402 AAAA 2405
Score = 1430 bits (774), Expect = 0.0
Identities = 1038/1158 (90%), Gaps = 48/1158 (4%)
Strand=Plus/Plus
Query 1 AAATCACACAATCAGACAAAATAAAAAGGTTCCTTCTTTATAACTTCCGACGGTGTCCAT 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 AAATCACACAATCAGACAAAAT-AAAAGGTTCCTTCTTTATAACTTCCGACGGTGTCCAT 59
Query 61 TATCTGAATCCGACAATTCTTGATGGGTTTTGGCGTTTTGAGTTGATAAACCATTCTGAG 120
|||| ||||| |||||||||||||||||||||||||||| ||||| ||||||||||| |
Sbjct 60 TATCCGAATCTGACAATTCTTGATGGGTTTTGGCGTTTTTTGTTGAGAAACCATTCTGGG 119
Query 121 TTGTGAATCAGGGATACAAGAGAGAGAGGAAAGTGGTTTTACGGTGACCGGAGAGATGAA 180
||| ||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 120 TTGCGAATCAGGGATTTAAGAGAGAGAGGAAAGTGGTTTTCCGGTGACCGGAGAAATGAA 179
Query 181 CGGAGAAGGGATCTCTGATGG-TT-T-GTC-G-G-CTGAGAGGAAAGTGGAAATTAGAGT 234
|||||||||||||||||||| || | | | | | ||||||||||||||||||| |||||
Sbjct 180 TGGAGAAGGGATCTCTGATGGTTTATCGGCTGAGCCTGAGAGGAAAGTGGAAATCAGAGT 239
Query 235 GAGGAAGAATGGGAGAAAGGATAAGGTTATAGTTGAGAAATCTGCTGCTCAAGGTTTACC 294
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 240 GAGGAAGAATGGGAGAAAGGATAAGGTTATAGTTGAGAAATCTGCAGCTCAAGGCTTACC 299
Query 295 TGAAGGATGGATCAAGAAACTTGAAATAACAAATAGATCAGGCCGTAAAACCAGAAGAGA 354
|||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||
Sbjct 300 TGAAGGATGGATCAAGAAGCTTGAAATAACAAACAGATCAGGCCGTAAAAACAGAAGAGA 359
Query 355 TCCATTCTTCATTGACCCTAAAAGTGAGTATATCTTTCAATCCTTCAAAGACGCATCACG 414
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 360 TCCATTCTTCATTGACCCTAAAAATGAGTATATCTTTCAATCGTTCAAAGACGCATCACG 419
Query 415 GTATGTTGAGACTGGCAATATTGGACATTATGCACGTAAATTGAAAGAAAGTGATATCGA 474
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 420 GTATGTTGAGACTGGCAATATTGGACATTATGCACGTAAATTGAAGGAAAGCGATATCGA 479
Query 475 AGATGATGATTCCGGAAATGGAAAGACTGTTCTTCGTCTGGAGTATGTGGACAAGAGATC 534
|||||||||||| |||||||||||||| || |||||||||||||||||||| |||| |||
Sbjct 480 AGATGATGATTCTGGAAATGGAAAGACCGTCCTTCGTCTGGAGTATGTGGAAAAGAAATC 539
Query 535 TGCAGATGATGTATTGGAAAAAGAGAAAACGATAGATG---ATGTCAGAAGAAGTAAACG 591
|||||||||| |||||||||| ||||||| ||||||| ||||||||| |||||||||
Sbjct 540 TGCAGATGATTTATTGGAAAAGGAGAAAAAGATAGATATTCATGTCAGAAAAAGTAAACG 599
Query 592 GAGAAACTTATCTTCTTCTGATGAACATTCCAAGAATTGTAAAATGACTTCTGACTTG-A 650
|||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||| |
Sbjct 600 GAGAAACTTATCTTCTTCTGATGAACATTCCAAGAATTATAAAATGAATTCTGA-TTGGA 658
Query 651 GCATTGTAACCTCACAAGTTCTTGAGGATTTGGGGAAGAAGGAAGAGGTGAAAGATCCTA 710
|||| |||||||||| ||||||| ||| | || | | | | ||||
Sbjct 659 GCATCGTAACCTCACCAGTTCTTCAGGC---G---AA-A-G-A-----T-------CCTA 697
Query 711 TCGAAAAGCAGCTCATAGCGAAACGGGTTACTAGAAGCCAAACTAAAGCCAGTACGACTG 770
|||||||||||| ||||| ||||||||||||||| |||||| ||||||||||||||| ||
Sbjct 698 TCGAAAAGCAGCCCATAGTGAAACGGGTTACTAGGAGCCAATCTAAAGCCAGTACGAATG 757
Query 771 AGGAAGTCGTCGTAGATTTAAAAAG-AAAT-CT-GTCTTCATCAAATGCAAAATCAGAAA 827
|||||||||| |||| ||||||| ||| || ||||||||||||||||||||||||||
Sbjct 758 AGGAAGTCGT---AGATATAAAAAGGAAAAACTTGTCTTCATCAAATGCAAAATCAGAAA 814
Query 828 AAGATTCTGTAAACTCCAG-T-G-----T--AAGGTCACAAAAACCAAAGAAGGAAGCTG 878
|||||| |||||| || || | | | ||||||||||||||||||||||||| ||
Sbjct 815 AAGATTTTGTAAAATCGAGGTTGAGCAGTGCAAGGTCACAAAAACCAAAGAAGGAATCTC 874
Query 879 TTATGAAGGAAGAAGAGGAACAAGATTCTTCTGAGAAACGGATCACAAGGAGTAAAGTTG 938
|| |||||||||||||||||||||||||| || | |||| | | ||||||||||||| |
Sbjct 875 TTTTGAAGGAAGAAGAGGAACAAGATTCTACTAAAAAACAGCTTACAAGGAGTAAAGCTA 934
Query 939 AAGAGAAGAAGAATGAGCTAAGTAATAGTGTAGCCCGACGAACATCAAAACGGTTAGCTG 998
||| ||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 935 AAGTGAAGACGAATGAGTTAAGTAATAGTGTAGCCCGACGAACATCAAAACGATTAGCTG 994
Query 999 GTATTGAGCTTGAACCAACGCCTGAACTGAAGACAAGAGCCAAAGTTCAACGAATAGTAC 1058
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 995 GTATTGAGCTTGAACCAACGCCTGAACTGAAGACAAGAACCAAAGTTCAACGAATAGTGC 1054
Query 1059 CGCTTGATGATGAACCGACGCCTGAACTGAAGACAAGAACCAAAGTTCAACGAGTAGTAC 1118
| | |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1055 CTCCTGATGATGAACCAACGCCTGATCTGAAGACAAGAACCAAAGTTCAACGAGTAGTAC 1114
Query 1119 CGCCTGATGATGAACCGA 1136
| ||||||||||| ||||
Sbjct 1115 CTCCTGATGATGAGCCGA 1132
Score = 187 bits (101), Expect = 3e-46
Identities = 119/128 (93%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 1069 TGAACCGACGCCTGAACTGAAGACAAGAACCAAAGTTCAACGAGTAGTACCGCCTGATGA 1128
|||||| |||||||||||||||||||||||||||||||||||| |||| || ||||||||
Sbjct 1005 TGAACCAACGCCTGAACTGAAGACAAGAACCAAAGTTCAACGAATAGTGCCTCCTGATGA 1064
Query 1129 TGAACCGACGCCTGAACTGAAGACAAGAACCAAAATTCAACGAATAGTACCTCCTGATGA 1188
|||||| |||||||| |||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1065 TGAACCAACGCCTGATCTGAAGACAAGAACCAAAGTTCAACGAGTAGTACCTCCTGATGA 1124
Query 1189 TGAACCGA 1196
||| ||||
Sbjct 1125 TGAGCCGA 1132
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98996546755
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5