BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G52250.1 Length=1372 Score E Sequences producing significant alignments: (Bits) Value Ahg495294 jgi|Araly1|495294|fgenesh2_kg.8__1110__AT5G52250.1 2074 0.0 > Ahg495294 jgi|Araly1|495294|fgenesh2_kg.8__1110__AT5G52250.1 Length=1306 Score = 2074 bits (1123), Expect = 0.0 Identities = 1251/1312 (95%), Gaps = 11/1312 (1%) Strand=Plus/Plus Query 1 ATAGTTTCGTGTGGACCTAACTAAAACTAGTCGTAACTCATTCATGGAGGCTTTGTTCTG 60 |||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||| Sbjct 1 ATAGTTTCTTGTGGACCTAACAAAAACTAGTCTTAACTCATTCATGGAGGCTTTGTTCTG 60 Query 61 CTCTGAGATACCCAACAACAACATCAGATCTTCCATTAACGAtctatcttcttcttcttc 120 |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 61 CTCTGAGATACCCAACAACAACATCAGATCTTCCATTAACGATC--TC-TCTTCTTCTTC 117 Query 121 atatacatggccaatgatcatgacctcctcttcttcttcttcttcatctCCCACAATCAT 180 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 118 ATATACATGGCCAATGATCATGACCTCCTCTTCTACTTCTTCTTCATCTCCCACAATCAT 177 Query 181 GAACATAGAGAACATTCCTAGATGCGACTGGGATCTCTCTCTTTCCGCCGTTGTTTCCTC 240 |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 178 GAACATAGAGAACATTCCTAGATGCGACTGGGATCTCTCTCTCTCCGCCGTCGTTTCCTC 237 Query 241 CGCATCCACCGGATCAGACGCTATCGGAGCAATCGAGTTCGACCCTACCGGAGAGATCAT 300 ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 238 CGCATCCACTGGATCAGACGCTATCGGAGCAATCGAGTTTGACCCTACCGGAGAGATCAT 297 Query 301 AGCTACGGGAGGAATCGCAAGAAAGATCAGATCGTATCGTTTAAGCTCTTTGTTAGAGTC 360 |||||| ||||| ||||| ||||||||||||| ||||||||||||||||||||||||||| Sbjct 298 AGCTACTGGAGGGATCGCGAGAAAGATCAGATGGTATCGTTTAAGCTCTTTGTTAGAGTC 357 Query 361 ACGTGACGATCACGTAACAGCTTCAGAGAGCTATATTTGCACGCCGGCGAAGCTTAGTAG 420 |||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||| Sbjct 358 ACGTGACGATCACGTAACAGCTTCAGAGAGCTGTATCTGCACGCCAGCGAAGCTTAGTAG 417 Query 421 TCTCAAATGGAGACCCGATTTTTCCGGTCGGGTTATCGGGTCAGGAGATTACGACGGAGT 480 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 418 TCTCAAATGGAGACCCGATTTATCCGGTCGGGTTATCGGGTCAGGAGATTACGACGGAGT 477 Query 481 TGTCACCGAGTACGACGTGGAGAAACAAGTGCCTGTTTCCGAGAGAGACGAGCATGGAGG 540 |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 478 TGTCACAGAGTACGACGTTGAGAAACAAGTGCCTGTTTCCGAGAGAGACGAGCATGGAGG 537 Query 541 TAGAAGGATTTGGAGCGTGGACTACACGCTTTACAATGGCTCTCTTATAGGCGCGTCAGG 600 |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 538 TAGAAGGATTTGGAGCGTAGACTACACGCTCTACAATGGCTCTCTTATAGGCGCGTCAGG 597 Query 601 CTCCGACGACGGAACGGTTCAAATGTGGGATCCACGTAACGGAGGGACGTTAGAAGAAAC 660 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 598 CTCCGACGACGGAACGGTTCAAATGTGGGATCCACGTAACGGAGGGACGTTGGAAGAAAC 657 Query 661 GGTTAGGCCCGGTGGTGGAGCGGCGATTTGTTCGGTAGAGTTCGATCCGTTCGGTGGATC 720 |||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 658 GGTTAGGCCCGGAGGTGGAGCGGCGATTTGTTCGGTAGAGTTTGATCCATTCGGTGGATC 717 Query 721 TTCCATAGCCGTTGGATGTGCTGACCGGAATGCCTACGTGTATGACATCAGAAGACTAGT 780 ||| |||||||||||||||||||||||||||| |||||||| ||||||||| |||| || Sbjct 718 TTCTTTAGCCGTTGGATGTGCTGACCGGAATGCTTACGTGTACGACATCAGACGACTCGT 777 Query 781 GGACCCTTTGATCGTATTAGACGGCCATACCAAAACGGTGACGTATGCTCGATTCATGGA 840 ||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||| Sbjct 778 TGACCCTTTGATCGTATTAGACGGTCATACCAAAACGGTGACGTATGCTCGGTTCTTGGA 837 Query 841 TTCTCACACGATCGTTACCGGTTCGACCGACGGGAGCTTGAAGCAATGGGATATAGATAA 900 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 838 TTCTCACACGATCGTTACCGGTTCGACCGACGGGAGCTTGAAGCAATGGGATATAGATAA 897 Query 901 TGGACGGCGCGTGGTTCGCACGTACCGAGGGCATGTGAATAGCCGGAACTTTGTTGGGTT 960 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 898 TGGACGGCGCGTGGTTCGCACGTACCGAGGGCATGTTAATAGCCGGAACTTTGTTGGGTT 957 Query 961 GTCGGTTTGGAGACATGGTGGTTTGGTCGTGTCCGGGTCAGAGAATAACCAAGTGTTTGT 1020 ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 958 GTCGGTTTGGAGACATGGTGGTTTGGTCGTGTCTGGGTCGGAGAATAACCAAGTGTTTGC 1017 Query 1021 GTACGATAAGAGGTGGGAGGAACCGGTTTGGGTTTGTGGATTGGGTCATAC-GAACCGGT 1079 |||||||||||||||||||||||||||||||||||||||||||||||| || | |||||| Sbjct 1018 GTACGATAAGAGGTGGGAGGAACCGGTTTGGGTTTGTGGATTGGGTCA-ACCGGACCGGT 1076 Query 1080 TTG-GATCTGACCGACGGTTTGTTAGTAGTGTGTGTTTGAGACAAGTGGATGAAGATTGG 1138 ||| | |||||||||||||||| |||||||| ||||||||||||||||||||||| ||| Sbjct 1077 TTGAGG-CTGACCGACGGTTTGTGAGTAGTGTTTGTTTGAGACAAGTGGATGAAGACTGG 1135 Query 1139 TGCACACTTG-TGGCCGGAGGATCCGATGGGGCTTTAGAAATTTTCTCGGGCAAACAAAG 1197 |||||||||| || | ||||||||||||||||||||||| |||||||||||||||| || Sbjct 1136 TGCACACTTGCTG-CTGGAGGATCCGATGGGGCTTTAGAGATTTTCTCGGGCAAACGGAG 1194 Query 1198 CTAATCAGTATTTATATTAtttttttCTGCTCATGATTAATACAAACTGTTTTTCAGTTG 1257 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1195 CTAATCAGTATTTATATTATTTTTTTCTGCTCATGATTGATACAAACTGTTTTTCAGTTG 1254 Query 1258 ATTTTATA--CTGTCTATAGTTATTAATTTTAATATGATTGAATGTTACTAC 1307 |||||||| | |||||||||||||||||||||| ||||||||||||||||| Sbjct 1255 ATTTTATAAACGGTCTATAGTTATTAATTTTAATTTGATTGAATGTTACTAC 1306 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51351569199 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5