BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G52300.1 Length=2134 Score E Sequences producing significant alignments: (Bits) Value Ahg495299 jgi|Araly1|495299|fgenesh2_kg.8__1115__AT5G52300.1 1585 0.0 Ahg887710 jgi|Araly1|887710|Al_scaffold_0271_3 582 3e-165 Ahg949787 jgi|Araly1|949787|scaffold_801674.1 361 1e-98 Ahg492269 jgi|Araly1|492269|fgenesh2_kg.7__1702__AT4G25580.1 52.8 1e-05 > Ahg495299 jgi|Araly1|495299|fgenesh2_kg.8__1115__AT5G52300.1 Length=1707 Score = 1585 bits (858), Expect = 0.0 Identities = 1096/1210 (91%), Gaps = 20/1210 (2%) Strand=Plus/Plus Query 850 CTGCTCCAGGAGGAGGATCGGATTATCTCAGTGGTGTATCTAATTATCAGTCCAAAGTTA 909 |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 511 CTGCTCCAGGAGGAGGTTCGGATTATCTTAGTGGTGTATCTAATTATCAGTCCAAAGTTA 570 Query 910 CTGATCCCACGCATAAAGGTGGAGAAGCTGGAGTACCAGAGATTGCTGAGTCTCTTGGTA 969 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 571 CTGATCCCACTCATAAAGGTGGAGAAGCTGGAGTACCAGAGATTGCTGAGTCTCTTAGTC 630 Query 970 GAATGAAAGTGACTGATGAGTCTCCTGATCAGAAATCAAGACAAGGACGCGAAGAAGACT 1029 | ||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 631 GGATGAAAGTGACTGATGAGTCTCCTGATCAGAAATCAAGACAAGGATTTGGAGAAGACT 690 Query 1030 TTCCGACGAGAAGCCATGAGTTTGATCTGAAGAAGGAATCTGATATCAACAAGAATTCTC 1089 | |||||||||||||| || |||| ||||||||| ||||||||||||| |||| |||||| Sbjct 691 TACCGACGAGAAGCCAAGAATTTGGTCTGAAGAACGAATCTGATATCAGCAAGGATTCTC 750 Query 1090 CGGCAAGATTTGGAGGGGAATCAAAAGCTGGGAT-GGAGGAAGATTTTCCGACAAG-AG- 1146 |||||||| ||||||| ||||||| |||||| | || ||||||||||| || ||| || Sbjct 751 CGGCAAGACTTGGAGGAGAATCAAGAGCTGGTCTCGG-GGAAGATTTTCAGAGAAGAAGT 809 Query 1147 G-TGATGTGAAAGTAGAGAGTGGATTGGGAAGAGACTTACCGACGGGAACTCATGATCAG 1205 | ||||||||||| ||||| ||| |||||||||||||||||||| ||||||||||||||| Sbjct 810 GATGATGTGAAAGCAGAGACTGGGTTGGGAAGAGACTTACCGACCGGAACTCATGATCAG 869 Query 1206 TTCTCACCAGAACTATCTCGTCCCAAAGAGAGAGATGATTCTGAGGAAACCAAAGATGAG 1265 |||||||| |||||||||||||| |||||||||||||||| ||||||||||| ||||||| Sbjct 870 TTCTCACCGGAACTATCTCGTCCTAAAGAGAGAGATGATTTTGAGGAAACCAGAGATGAG 929 Query 1266 TCGACACATGAGACAAAACCAAGCACCTACACAGAGCAGTTAGCTTCAGCTACATCAGCC 1325 ||| ||| |||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 930 ACGAAACAGGAGAGGAAACCGAGCACCTACACAGAGCAGTTAGCTTCAGCTACATCAGCC 989 Query 1326 ATAACTAACAAAGCTATAGCCGCAAAGAACGTCGTTGCCTCAAAGCTAGGTTACACCGGA 1385 ||||| |||||||||||||| || ||||||||||| |||||||||||||||| | |||| Sbjct 990 ATAACCAACAAAGCTATAGCGGCTAAGAACGTCGTCGCCTCAAAGCTAGGTT--A-CGGA 1046 Query 1386 GAGAA-TGGCGGCGGGCAA-AGCGAGAGCCCTGTAAAA-GATGAAACTCCGAGATCTGTT 1442 || || |||||||||||| | ||| ||| ||| |||| |||||||||||||| |||| | Sbjct 1047 GA-AAGCGGCGGCGGGCAATA-CGAAAGCGCTG-AAAAGGATGAAACTCCGAGGTCTGCT 1103 Query 1443 ACTGCTTACGGGCAGAAAGTGGCGGGAACTGTTGCTGAGAAGTTGACTCCGGTTTACGAA 1502 || | ||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1104 ACGGGTTATGGGCAGAAAGTGGCGGGAACTGTTGCTGAGAAGTTGACTCCGGTCTACGAA 1163 Query 1503 AAAGTCAAAGAAACAGGATCAACGGTGATGACAAAGCTACCTCTCTCCGGAGGTGGAAGT 1562 || |||||||| ||||||||| | |||||||| ||||||||| ||||||||||||||||| Sbjct 1164 AAGGTCAAAGAGACAGGATCAGCCGTGATGACGAAGCTACCTATCTCCGGAGGTGGAAGT 1223 Query 1563 GGAGTGAAGGAGACGCAACAAGGGGAAGAGAAAGGTGTGACGGCTAAAAATTATATATCA 1622 ||| ||||||||||||||||||| ||||||||||||||| || ||| | ||||| |||| Sbjct 1224 GGAATGAAGGAGACGCAACAAGGTGAAGAGAAAGGTGTGTCGACTAGAGATTATCTATCG 1283 Query 1623 GAGAAGCTGAAACCTGGAGAAGAGGACAAAGCTTTATCGGAAATGATAGCTGAGAAACTT 1682 |||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 1284 GAGAAGCTGAGACCTGGAGAAGATGACAAAGCTTTATCGGAGGTGATAGCTGAGAAACTT 1343 Query 1683 CATTTTGGAGGAGGAGGAGAGAAGAAGACAACGGCTACAAAGGAGGTGGAAGTGACGGTT 1742 ||||||||||||||| || | |||||||||||||| ||||||||||||||||||||||| Sbjct 1344 CATTTTGGAGGAGGA-GA-A-AAGAAGACAACGGCGACAAAGGAGGTGGAAGTGACGGTG 1400 Query 1743 GAGAAGATACCTTCCGACCAGATAGCGGAGGGGAAAGGACATGGTGAGGCGGTTGCAGAG 1802 |||||||||||||||||||||||| ||||||||| || |||||||||||||||| | ||| Sbjct 1401 GAGAAGATACCTTCCGACCAGATATCGGAGGGGAGAGAACATGGTGAGGCGGTTACTGAG 1460 Query 1803 GAAGGAAAAGGTGGAGAAGGAATGGTGGGGAAAGTTAAAGGAGCGGTCACTTCTTGGCTC 1862 ||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1461 GAAGGGAAA---GAAGAAGGAATGGTGGGGAAAGTTAAAGGAGCGGTCACTTCTTGGCTC 1517 Query 1863 GGTGGTAAACCGAAGTCGCCACGGTCCGTTGAAGAGTCTCCACAATCACTTGGCACCACC 1922 |||||||| ||||| ||||||| || ||||||||||||||||||||||||||||||||| Sbjct 1518 GGTGGTAAGCCGAAATCGCCACATTCAGTTGAAGAGTCTCCACAATCACTTGGCACCACC 1577 Query 1923 GTTGGGACTATGGGGTTTTCGGATTCCGGTGGAAGTGAGTTGGGAGGCAGTGGCGGAGGT 1982 |||||||||||||||||| |||||||| |||||||| ||||||| || | |||||||| | Sbjct 1578 GTTGGGACTATGGGGTTTACGGATTCCAGTGGAAGTAAGTTGGGTGGTACTGGCGGAGCT 1637 Query 1983 AAGGGAGTTCAAGATTCTGGGAACTGAAGATTTGGGgttttgcttttgaatgtttgtgtt 2042 ||||||||||||||||||||||||||||||||||||||||| | || |||||| |||||| Sbjct 1638 AAGGGAGTTCAAGATTCTGGGAACTGAAGATTTGGGGTTTTTCCTTCGAATGTCTGTGTT 1697 Query 2043 tttgtatgat 2052 |||||||||| Sbjct 1698 TTTGTATGAT 1707 Score = 760 bits (411), Expect = 0.0 Identities = 484/519 (93%), Gaps = 5/519 (1%) Strand=Plus/Plus Query 80 AAGAAAACAACACTAGAACAAAGAGGGTTTGATTGATTCACTTG-AAAAAGAGAAAACAC 138 ||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct 1 AAGAAAACAACGCTAGAACAAAGAGAGTTTGATTGATTCACTTGAAAAAAGAGAAAACAC 60 Query 139 AGCTTTGGAAAATGGAGTCACAGTTGACACGTCCTTATGGTCATGAGCAAGCAGAAGAAC 198 ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| Sbjct 61 AGCTTTGGAAAATGGAGTCGCAGTTGACACGTCCTTATGGTCATGAGCAAGTAGAAGAAC 120 Query 199 CAATCAGAATTCACCATCCAGAAGAAGAAGAGCATCATGAGAAGGGAGCATCCAAAGTGT 258 ||||||||||||||||||| || ||||| ||||||||||| ||||||||||| ||||||| Sbjct 121 CAATCAGAATTCACCATCCTGAGGAAGACGAGCATCATGATAAGGGAGCATCTAAAGTGT 180 Query 259 TGAAG-AAAGTAAAAGAAAAGGCTAAGAAAATCAAGAACAGTCTCACTAAACATGGAAAT 317 | ||| |||||||||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct 181 T-AAGAAAAGTAAAAGAAAAAGCTAAGAAGATCAAGAACAGTCTCACTAAACATGGCAAT 239 Query 318 GGTCATGATCACGATGTGGAAGATGATGATGATGAGTATGACGAGCAAGACCCAGAAGTT 377 ||||||||||||||||| ||||| || || |||||||||||||||||||||||||||| Sbjct 240 GGTCATGATCACGATGTTGAAGAAGAAGAAGATGAGTATGACGAGCAAGACCCAGAAGAG 299 Query 378 CACGGCGCACCAGTGTATGAATCCTCTGCCGTGAGAGGTGGTGTAACGGGTAAACCTAAG 437 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 300 CACGGAGCACCAGTGTATGAATCCTCTGCCGTGAGAGGTGGTGTAACGGGTAAACCTGAG 359 Query 438 TCTCTTA-GTCATGCCGGAGAAACTAATGTTCCGGCATCGGAGGAGATTGTTCCTCCAGG 496 ||| ||| ||||| ||||||||||||||||||| ||| |||||||||||||||||||||| Sbjct 360 TCT-TTAAGTCATACCGGAGAAACTAATGTTCCAGCACCGGAGGAGATTGTTCCTCCAGG 418 Query 497 GACAAAAGTTTTTCCTGTCGTGTCTTCTGACCACACCAAACCCATTGAGCCTGTATCATT 556 ||||| |||||||||||||||||||| || ||||||||||||||||||||||| ||||| Sbjct 419 AACAAAGGTTTTTCCTGTCGTGTCTTCCGAGCACACCAAACCCATTGAGCCTGTTTCATT 478 Query 557 ACAAGATACCTCTTACGGACATGAGGCACTGGCTGATCC 595 ||||||||||||||||||||||||||||||| ||| ||| Sbjct 479 ACAAGATACCTCTTACGGACATGAGGCACTGTCTGCTCC 517 > Ahg887710 jgi|Araly1|887710|Al_scaffold_0271_3 Length=831 Score = 582 bits (315), Expect = 3e-165 Identities = 406/450 (90%), Gaps = 5/450 (1%) Strand=Plus/Plus Query 928 GTGGAGAAGCTGGAGTACCAGAGATTGCTGAGTCTCTTGGTAGAATGAAAGTGACTGATG 987 |||||||||||||||||||||||||||||||||||||| || | |||||||||||||||| Sbjct 383 GTGGAGAAGCTGGAGTACCAGAGATTGCTGAGTCTCTTAGTCGGATGAAAGTGACTGATG 442 Query 988 AGTCTCCTGATCAGAAATCAAGACAAGGACGCGAAGAAGACTTTCCGACGAGAAGCCATG 1047 ||||||||||||||||||||||||||||| | ||||||||| |||||||||||||| | Sbjct 443 AGTCTCCTGATCAGAAATCAAGACAAGGATTTGGAGAAGACTTACCGACGAGAAGCCAAG 502 Query 1048 AGTTTGATCTGAAGAAGGAATCTGATATCAACAAGAATTCTCCGGCAAGATTTGGAGGGG 1107 | |||| ||||||||| ||||||||||||| |||| |||||||||||||| ||||||| | Sbjct 503 AATTTGGTCTGAAGAACGAATCTGATATCAGCAAGGATTCTCCGGCAAGACTTGGAGGAG 562 Query 1108 AATCAAAAGCTGGGAT-GGAGGAAGATTTTCCGACAAGA-G-G-TGATGTGAAAGTAGAG 1163 |||||| |||||| | || ||||||||||| || |||| | | ||||||||||| |||| Sbjct 563 AATCAAGAGCTGGTCTCGG-GGAAGATTTTCAGAGAAGAAGTGATGATGTGAAAGCAGAG 621 Query 1164 AGTGGATTGGGAAGAGACTTACCGACGGGAACTCATGATCAGTTCTCACCAGAACTATCT 1223 | ||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 622 ACTGGGTTGGGAAGAGACTTACCGACCGGAACTCATGATCAGTTCTCACCGGAACTATCT 681 Query 1224 CGTCCCAAAGAGAGAGATGATTCTGAGGAAACCAAAGATGAGTCGACACATGAGACAAAA 1283 ||||| |||||||||||||||| ||||||||||| ||||||| ||| ||| |||| ||| Sbjct 682 CGTCCTAAAGAGAGAGATGATTTTGAGGAAACCAGAGATGAGACGAAACAGGAGAGGAAA 741 Query 1284 CCAAGCACCTACACAGAGCAGTTAGCTTCAGCTACATCAGCCATAACTAACAAAGCTATA 1343 || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 742 CCGAGCACCTACACAGAGCAGTTAGCTTCAGCTACATCAGCCATAACCAACAAAGCTATA 801 Query 1344 GCCGCAAAGAACGTCGTTGCCTCAAAGCTA 1373 || || ||||||||||| |||||||||||| Sbjct 802 GCGGCGAAGAACGTCGTCGCCTCAAAGCTA 831 Score = 427 bits (231), Expect = 1e-118 Identities = 288/315 (91%), Gaps = 5/315 (2%) Strand=Plus/Plus Query 284 GAAAATCAAGAACAGTCTCACTAAACATGGAAATGGTCATGATCACGATGTGGAAGATGA 343 ||| ||||||||||||||||||| |||||| |||||||||||||||||||| ||||| || Sbjct 51 GAAGATCAAGAACAGTCTCACTAGACATGGCAATGGTCATGATCACGATGTTGAAGAAGA 110 Query 344 TGATGATGAGTATGACGAGCAAGACCCAGAAGTTCACGGCGCACCAGTGTATGAATCCTC 403 || |||||||||||||||||||||||||||| ||||| |||||| ||||||||||| Sbjct 111 AGAAGATGAGTATGACGAGCAAGACCCAGAAGAGCACGGAGCACCA---TATGAATCCTC 167 Query 404 TGCCGTGAGAGGTGGTGTAACGGGTAAACCTAAGTCTCTT-AGTCATGCCGGAGAAACTA 462 |||||| |||||||||||||||||||||||| ||||| || |||||| |||||||||||| Sbjct 168 TGCCGTAAGAGGTGGTGTAACGGGTAAACCTGAGTCT-TTAAGTCATACCGGAGAAACTA 226 Query 463 ATGTTCCGGCATCGGAGGAGATTGTTCCTCCAGGGACAAAAGTTTTTCCTGTCGTGTCTT 522 ||||||| ||| |||||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 227 ATGTTCCAGCACCGGAGGAGATTGTTCCTCCAGGAACAAAGGTTTTTCCTGTCGTGTCTT 286 Query 523 CTGACCACACCAAACCCATTGAGCCTGTATCATTACAAGATACCTCTTACGGACATGAGG 582 | || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 287 CCGAGCACACCAAACCCATTGAGCCTGTTTCATTACAAGATACCTCTTACGGACATGAGG 346 Query 583 CACTGGCTGATCCTG 597 ||||| ||| ||||| Sbjct 347 CACTGTCTGCTCCTG 361 > Ahg949787 jgi|Araly1|949787|scaffold_801674.1 Length=2370 Score = 361 bits (195), Expect = 1e-98 Identities = 318/373 (85%), Gaps = 26/373 (7%) Strand=Plus/Plus Query 683 AGG-AGAGAGCAGAGAGGCTCATCAAGAGCCATTGAACACTCCTGTGTCTCTGCTTTCAG 741 ||| ||||||||||||||||||||| ||| || || ||||| | |||||||||| | Sbjct 452 AGGAAGAGAGCAGAGAGGCTCATCACGAGGCAATGGACACT-C-----CTCTGCTTTCTG 505 Query 742 CAACAGAGGACGTGACTAGGACGTTTGCTCCTGGTGGTGAAGATGACTATCTCGGTGGTC 801 | |||||||| | || |||||||||||||||| |||||||||||| ||||| | ||||| Sbjct 506 CGACAGAGGATATCACGAGGACGTTTGCTCCTGCTGGTGAAGATGATTATCTTGATGGTC 565 Query 802 AACGGAAAGTCAACGTCGAGACGCC-A-AAACGTTTGGAGGAAGATCCGGCTGC-TCCAG 858 ||||||||||||||| |||||| || | || | |||||||||||||||||| | | ||| Sbjct 566 AACGGAAAGTCAACGGCGAGACACCGATCAA-G-TTGGAGGAAGATCCGGCT-CTTACAG 622 Query 859 GAGGAGGATCGGATTATCTCAGTGGTGTATCTAATTATCAGTCCAAAGTTACTGATCCCA 918 ||||||| || |||||||| ||||||| |||||||||||||||||||||||||||||||| Sbjct 623 GAGGAGGTTCTGATTATCTTAGTGGTGCATCTAATTATCAGTCCAAAGTTACTGATCCCA 682 Query 919 CGCATA-AAGG---TGGAGAAGCTGGAGTACCAGAGATTGCTGAGTCTCTTGGTAGA-AT 973 | || | |||| |||||||||| ||||||| |||||| ||||||||||||||| | || Sbjct 683 C-CAAAGAAGGAAGTGGAGAAGCTAGAGTACCGGAGATTACTGAGTCTCTTGGTA-ATAT 740 Query 974 GAAAGTGACTGATGAGTCTCCTGATCAGAAATCAAG-ACAAGGACGCGAA-GAAGACTT- 1030 ||||||||||||||||||||||||||||||| |||| ||||||| ||| || ||||| Sbjct 741 GAAAGTGACTGATGAGTCTCCTGATCAGAAA-CAAGCACAAGGATTTGAAAGA-GACTTG 798 Query 1031 TCCGACGAGAAGC 1043 || |||||||||| Sbjct 799 TC-GACGAGAAGC 810 Score = 243 bits (131), Expect = 6e-63 Identities = 195/226 (86%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 417 GGTGTAACGGGTAAACCTA-AGTCTCTTAGTCATGCCG-GAGAAACTAATGTTCCGGCAT 474 ||||||| |||||||| | ||||||| |||||| ||| |||||||||||||||||||| Sbjct 247 GGTGTAAAAGGTAAACC-AGAGTCTCTGAGTCAT-CCGAGAGAAACTAATGTTCCGGCAG 304 Query 475 CGGAGGAGATTGTTCCTCCAGGGACAAAAGTTTTTCCTGTCGTGTCTTCTGACCACACCA 534 |||||||||||||||||||||||||||| || ||||||||||||||||| || |||||| Sbjct 305 CGGAGGAGATTGTTCCTCCAGGGACAAAGGTGTTTCCTGTCGTGTCTTCCGATTACACCA 364 Query 535 AACCCATTGAGCCTGTATCATTACAAGATACCTCTTACGGACATGAGGCACTGGCTGATC 594 |||||| ||| ||||| ||| ||| ||||||||||||||||| || |||| |||| || Sbjct 365 AACCCACTGAATCTGTACCATCACAGGATACCTCTTACGGACACGATGCACCGGCTCATT 424 Query 595 CTGTAAGAACGACGGAAACATCGGACTGGGAAGCGAAAAGAGAGGC 640 |||||||||||||||| ||||||| | ||||| || |||||||| Sbjct 425 CTGTAAGAACGACGGATACATCGGGCAAGGAAGAGAGCAGAGAGGC 470 Score = 75.0 bits (40), Expect = 2e-12 Identities = 55/62 (89%), Gaps = 1/62 (2%) Strand=Plus/Plus Query 1866 GGT-AAACCGAAGTCGCCACGGTCCGTTGAAGAGTCTCCACAATCACTTGGCACCACCGT 1924 ||| || ||||| ||||||| |||||||||||||||||||||||||||||| | ||||| Sbjct 2265 GGTGAAGCCGAAATCGCCACATTCCGTTGAAGAGTCTCCACAATCACTTGGCTCAACCGT 2324 Query 1925 TG 1926 || Sbjct 2325 TG 2326 > Ahg492269 jgi|Araly1|492269|fgenesh2_kg.7__1702__AT4G25580.1 Length=2012 Score = 52.8 bits (28), Expect = 1e-05 Identities = 28/28 (100%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 888 TCTAATTATCAGTCCAAAGTTACTGATC 915 |||||||||||||||||||||||||||| Sbjct 906 TCTAATTATCAGTCCAAAGTTACTGATC 933 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 80294236460 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5