BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52310.1
Length=2500
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949787 jgi|Araly1|949787|scaffold_801674.1 1085 0.0
Ahg495299 jgi|Araly1|495299|fgenesh2_kg.8__1115__AT5G52300.1 161 2e-38
Ahg887710 jgi|Araly1|887710|Al_scaffold_0271_3 100 4e-20
Ahg492269 jgi|Araly1|492269|fgenesh2_kg.7__1702__AT4G25580.1 52.8 1e-05
> Ahg949787 jgi|Araly1|949787|scaffold_801674.1
Length=2370
Score = 1085 bits (587), Expect = 0.0
Identities = 712/771 (92%), Gaps = 14/771 (2%)
Strand=Plus/Plus
Query 1473 GAGACTCTTGATCAATTCTCACCGGAACTTTCTCATCCTAAAGA-AAGAGATGAGTTTAA 1531
||||||| ||||||||||||||||||||| |||| ||||||||| || ||||||||||||
Sbjct 1603 GAGACTCATGATCAATTCTCACCGGAACTATCTCGTCCTAAAGAGAA-AGATGAGTTTAA 1661
Query 1532 GGAGTCCAGAGATGATTTTGAGGAGACGAGAGATGAGAAAACAGAGGAGCCAAAA-CAGA 1590
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1662 GGAGTCCAGAGATGATTTTGAGGAGACGAGAGATGAGAAAACAGAGGAGCCAAAAAC-GA 1720
Query 1591 GCACTTACACAGAGAAGTTTGCTTCAATGCTAGGTTACTCCGGAGAAATTCCGGTGGGAG 1650
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1721 CCACTTACACAGAGAAGTTTGCTTCAATGCTAGGTTACTCCGGAGAGATTCCGGTGGGAG 1780
Query 1651 ATCAAACTCAAGTGGCGGGAACTGTTGATGAGAAGTTGACTCCGGTCAATGAGAAGGATC 1710
|||||| | ||||| ||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1781 ATCAAAGTGAAGTGACGGGAACTGTTGATGAGAAGTTGACACCTGTCAATGAGAAGGATC 1840
Query 1711 AAGAAACAGAGTCTGCCGTGACGACGAAGTTACCTATCTCCGGAGGTGGAAGTGGAGTAG 1770
||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||| |
Sbjct 1841 AAGAAACAGAGTCTGCCTTGACGACGAAGTTACCTCTCTCTGGAGGTGGAAGTGGAGCGG 1900
Query 1771 AGGAGCAACGAGGGGAAGATAAAAGTGTGTCGGGTAGAGATTATGTGGCGGAGAAACTGA 1830
|||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 1901 AGGAGCAACGAGGGGAAGATAAAAATGTGTCGGGTAGAGATTATCCGGCGGAGAAACTGA 1960
Query 1831 CAACTGAAGAAGAAGACAAAGCCTTTTCTGATATGGTTGCCGAGAAACTTCAGATTGGAG 1890
| ||||||||||||||||||| |||||||| ||| |||| ||||| |||||||||||||
Sbjct 1961 CGCCTGAAGAAGAAGACAAAGCTTTTTCTGAGATGATTGCTGAGAAGCTTCAGATTGGAG 2020
Query 1891 GAGAAGAAGAGAAGAAGGA-AACGACGACAAAGGAAGTGGAGAAGATCTCTACCGAGAAG 1949
||| ||||||||||||| | |||||||||||||||||||||||||||| |||||||||||
Sbjct 2021 GAGGAGAAGAGAAGAAG-ACAACGACGACAAAGGAAGTGGAGAAGATCCCTACCGAGAAG 2079
Query 1950 GCAG-CATCggagg-ag-----ggtgaggcggtggaagaggaagtgaaaggaggaggagg 2002
| | | ||||| || |||||||||||||| |||||||||||||||||||||||
Sbjct 2080 AC-GTCGGAGGAGGGAGAACAAGGTGAGGCGGTGGATGAGGAAGTGAAAGGAGGAGGAGG 2138
Query 2003 aatggttgggaggattaaaggaTGGTTCGGTGGTGGTGCGACTGATGAGGTGAAGCCAGA 2062
||||||||||||||||||||||||||| ||||||| |||||| || |||||||||||| |
Sbjct 2139 AATGGTTGGGAGGATTAAAGGATGGTTTGGTGGTGCTGCGACGGAGGAGGTGAAGCCAAA 2198
Query 2063 ATCGCCACATTCTGTTGAAGAGGCTCCAAAATCATCTGGCTGGTTTGGTGGTGGTGCGAC 2122
||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||
Sbjct 2199 ATCGCCACATTCTGTTGAAGAGGCTCCAAAAACATCCGGCTTGTTTGGTGGTGGTGCGAC 2258
Query 2123 GGAGGAGGTGAAGCCAAAATCGCCTCATTCCGTTGAAGAGTCTCCACAATCACTTGGCTC 2182
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2259 GGAGGAGGTGAAGCCGAAATCGCCACATTCCGTTGAAGAGTCTCCACAATCACTTGGCTC 2318
Query 2183 CACTGTTGTTCCGGTGCAGAAGGAGCTTTAAGAATATGAGAACTGAGATTT 2233
|| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2319 AACCGTTGTTCCGGTGCATAAGGAGCTTTAAGAATATGAGAACTGAGATTT 2369
Score = 555 bits (300), Expect = 7e-157
Identities = 414/465 (89%), Gaps = 23/465 (5%)
Strand=Plus/Plus
Query 992 GGGCTTTGGTGACGAGTCAGGAGCTGAGCTGGAAAAAGATTTTCCGACGAGAAGTCATGA 1051
|||||| |||| ||| ||||||| |||||| |||||||||||| ||||||||| |||||
Sbjct 1140 GGGCTTCGGTGGCGAATCAGGAGTTGAGCTAGAAAAAGATTTTAAGACGAGAAGCCATGA 1199
Query 1052 TTTTGATATGAAGACTGAAACTGGAATGGACACGAATTCTCCATCAAGAAGCCATGAATT 1111
||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||| ||
Sbjct 1200 TTTTGATATGAAGACTGAAGCTGGAACGGACACGAATTCTCCATCAAGAAGCTATGAGTT 1259
Query 1112 TGATCTGAAGACTGAATCTGGAAACGACAAGAATTCTCCGATGGGCTTTGGTAGTGAATC 1171
|||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1260 TGATCTGAAGACAGAATCTGGAAACGACAAGAATTCTCCGCTGGGATTTGGTAGTGAATC 1319
Query 1172 AGGAGCTGAGCT-----G-G-A------A----AA---A-GAATTTGATCAGAAGAACGA 1210
|||||||||||| | | | | || | |||||||||||||||| ||
Sbjct 1320 AGGAGCTGAGCTGGGGAGAGAATTGCCGACGGGAAGTGATGAATTTGATCAGAAGATTGA 1379
Query 1211 TTCTGGAAGAAACGAGTATTCGCCGGAATCTGACGGCGGTTTAGGAGCTCCGTTGGGAGG 1270
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1380 ATCTGGAAGAAACGAGTATTCGCCGGAATCTGACGGCGGATTAGGAGCTCCGTTGGGAGG 1439
Query 1271 AAATTTTCCGGTGAGAAGTCATGAGTTGGATCTGAAGAACGAATCTGATATCGACAAGGA 1330
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 1440 AAATTTTCCGGTGAGAAGTCATGAGTTGGATCTGAAGAACGAATCTGGTATCGACAAAAA 1499
Query 1331 TGT-GCCGACGGGATTTGACGGAGAACCAGATTTTCTGGCGAAGGGAAGACCTGGATACG 1389
| | |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1500 T-TCGCCGACGGGATTTGACGGGGAACCAGATTTTCTGGCGAAGGGGAGACCTGGATACG 1558
Query 1390 GTGAGGCATCAGAAGAGGATAAATTTCCGGCGAGAAGTGATGATG 1434
| |||||||||||||||||||| ||| |||||| |||||||||||
Sbjct 1559 GCGAGGCATCAGAAGAGGATAACTTTTCGGCGAAAAGTGATGATG 1603
Score = 520 bits (281), Expect = 3e-146
Identities = 415/475 (87%), Gaps = 28/475 (6%)
Strand=Plus/Plus
Query 60 AAAGaaaaaaaTCTTTGGAAAATGGATCAAACAGAGGAACCACCACTCAACACACACCAG 119
|||||||||||||||||| | ||||||||||| | |||||||||||||||||||||||||
Sbjct 1 AAAGAAAAAAATCTTTGGCAGATGGATCAAACCGCGGAACCACCACTCAACACACACCAG 60
Query 120 CAGCACCCAGAAGAAGTTGAACATCATGAGAATGGTGCGACTAAGATGTTTAGGAAAGTA 179
||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 61 CAGCAACCAGAAGAAGTTGAACATCGTGAGAATGGTGCGTCTAAGATGTTTAGGAAAGTA 120
Query 180 AAGGCTAGAGCTAAGAAGTTCAAGAACAGTCTCACTAAACATGGA-CAAAGCAATGAGCA 238
||||| |||||||||||||||||||||||| | |||||||||| | |||||||||||||
Sbjct 121 AAGGCAAGAGCTAAGAAGTTCAAGAACAGTATTACTAAACATG-ATCAAAGCAATGAGCT 179
Query 239 TGAGCAAGATCATGATTTGGTTGAAGAAGATGATGATGATGACGAGCTAGAACCTGAAGT 298
||| ||||||| | ||||||||||||||||| ||||||||||||||||| ||||
Sbjct 180 TGA------TCATGATGTAGTTGAAGAAGATGATGAAGATGACGAGCTAGAACCAGAAGA 233
Query 299 GATCGATGCACCAGGCGTAACAGGTAAACC----T-----AG--A---GA-A-A--CTAA 340
||||||||||||||| |||| ||||||||| | || | || | | ||||
Sbjct 234 GATCGATGCACCAGGTGTAAAAGGTAAACCAGAGTCTCTGAGTCATCCGAGAGAAACTAA 293
Query 341 TGTTCCAGCATCGGAGGAAATTATTCCACCAGGGACAAAGGTGTTTCCTGTCGTGTCTTC 400
|||||| ||| ||||||| ||| |||| ||||||||||||||||||||||||||||||||
Sbjct 294 TGTTCCGGCAGCGGAGGAGATTGTTCCTCCAGGGACAAAGGTGTTTCCTGTCGTGTCTTC 353
Query 401 CGATTACACCAAACCCACTGAATCTGTACCAGT-ACAAGAGGCCTCTTACGGACACGATG 459
||||||||||||||||||||||||||||||| | ||| || ||||||||||||||||||
Sbjct 354 CGATTACACCAAACCCACTGAATCTGTACCA-TCACAGGATACCTCTTACGGACACGATG 412
Query 460 CACCGGCTCATTCTGTAAGGACGACGTTTACATCGGACAAGGAAGAGAAAAGAGA 514
||||||||||||||||||| |||||| |||||||| ||||||||||| |||||
Sbjct 413 CACCGGCTCATTCTGTAAGAACGACGGATACATCGGGCAAGGAAGAGAGCAGAGA 467
Score = 414 bits (224), Expect = 1e-114
Identities = 378/446 (85%), Gaps = 35/446 (8%)
Strand=Plus/Plus
Query 555 GAAGAGAGTAGAGAGACTCATCATGAGTCATTGAACACTCCGGTCTCTCTGCTTTCTG-G 613
|||||||| |||||| ||||||| ||| || || ||| | || |||||||||||| |
Sbjct 454 GAAGAGAGCAGAGAGGCTCATCACGAGGCAATGGACA---C--TC-CTCTGCTTTCTGCG 507
Query 614 AACAGAGGATGTAACGAGTACGTTTGCTCCAAG-TGGTGATGATGAATATCTTGATGGTC 672
||||||||| | ||||| ||||||||||| | |||||| ||||| |||||||||||||
Sbjct 508 -ACAGAGGATATCACGAGGACGTTTGCTCC-TGCTGGTGAAGATGATTATCTTGATGGTC 565
Query 673 AACGGAAGGTCAACGTCGAGACCCCGAT-AACGTTGGAGGAAGAGT-CGGCTGTTTC--- 727
||||||| ||||||| |||||| ||||| || |||||||||||| | ||||| || |
Sbjct 566 AACGGAAAGTCAACGGCGAGACACCGATCAA-GTTGGAGGAAGA-TCCGGCTCTTACAGG 623
Query 728 A-GA----C----TATCTTAGTGGTGTATCTAATTATCAGTCCAAAGTTACTGATCCCAC 778
| || | ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 624 AGGAGGTTCTGATTATCTTAGTGGTGCATCTAATTATCAGTCCAAAGTTACTGATCCCAC 683
Query 779 CAAAGAAGAAACT-G-G-AG---GAGTACCGGAGATTGCTGAGTCTTTTGGTAATATGGA 832
|||||||| || | | | || |||||||||||||| |||||||| ||||||||||| |
Sbjct 684 CAAAGAAGGAAGTGGAGAAGCTAGAGTACCGGAGATTACTGAGTCTCTTGGTAATATGAA 743
Query 833 AGTGACTGATGAGTCTCCTGATCAGAAGCCAGGAC-A--ATTTGAAAGAGACTTGTCGAC 889
||||||||||||||||||||||||||| | || || | |||||||||||||||||||||
Sbjct 744 AGTGACTGATGAGTCTCCTGATCAGAAACAAGCACAAGGATTTGAAAGAGACTTGTCGAC 803
Query 890 GAGAAGCAAAGAATTCAAAGAGTTTGATCAGGACTTTGACTCTGTTCTCGGTAAGGATTC 949
||||||||||||||||||||| |||||||||||||| |||||||||| | | ||||||||
Sbjct 804 GAGAAGCAAAGAATTCAAAGAATTTGATCAGGACTTCGACTCTGTTCCCAGCAAGGATTC 863
Query 950 GCCGGCGAAATTTCCAGGTGAATCAG 975
||||| ||||||| ||||||||||||
Sbjct 864 GCCGGTGAAATTTGCAGGTGAATCAG 889
Score = 100 bits (54), Expect = 4e-20
Identities = 62/66 (94%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 2103 TGGTTTGGTGGTGGTGCGACGGAGGAGGTGAAGCCAAAATCGCCTCATTCCGTTGAAGAG 2162
||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 2161 TGGTTTGGTGGTGCTGCGACGGAGGAGGTGAAGCCAAAATCGCCACATTCTGTTGAAGAG 2220
Query 2163 TCTCCA 2168
|||||
Sbjct 2221 GCTCCA 2226
> Ahg495299 jgi|Araly1|495299|fgenesh2_kg.8__1115__AT5G52300.1
Length=1707
Score = 161 bits (87), Expect = 2e-38
Identities = 158/190 (83%), Gaps = 14/190 (7%)
Strand=Plus/Plus
Query 725 TTCAGACTATCTTAGTGGTGTATCTAATTATCAGTCCAAAGTTACTGATCCCAC-C--AA 781
||| || ||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 527 TTCGGATTATCTTAGTGGTGTATCTAATTATCAGTCCAAAGTTACTGATCCCACTCATAA 586
Query 782 A---GAAGAAACTGGAGGAGTACCGGAGATTGCTGAGTCTTTTGGTAATATGGAAGTGAC 838
| | |||| || |||||||| ||||||||||||||| || || ||| |||||||
Sbjct 587 AGGTGGAGAAGCT---GGAGTACCAGAGATTGCTGAGTCTCTTAGTCGGATGAAAGTGAC 643
Query 839 TGATGAGTCTCCTGATCAGAAGCCAGGACAA---TTTGAAAGA-GACTTGTCGACGAGAA 894
||||||||||||||||||||| || ||||| |||| | || ||||| |||||||||
Sbjct 644 TGATGAGTCTCCTGATCAGAAATCAAGACAAGGATTTGGA-GAAGACTTACCGACGAGAA 702
Query 895 GCAAAGAATT 904
|| |||||||
Sbjct 703 GCCAAGAATT 712
> Ahg887710 jgi|Araly1|887710|Al_scaffold_0271_3
Length=831
Score = 100 bits (54), Expect = 4e-20
Identities = 95/114 (83%), Gaps = 5/114 (4%)
Strand=Plus/Plus
Query 795 GGAGTACCGGAGATTGCTGAGTCTTTTGGTAATATGGAAGTGACTGATGAGTCTCCTGAT 854
|||||||| ||||||||||||||| || || ||| |||||||||||||||||||||||
Sbjct 394 GGAGTACCAGAGATTGCTGAGTCTCTTAGTCGGATGAAAGTGACTGATGAGTCTCCTGAT 453
Query 855 CAGAAGCCAGGACAA---TTTGAAAGA-GACTTGTCGACGAGAAGCAAAGAATT 904
||||| || ||||| |||| | || ||||| ||||||||||| |||||||
Sbjct 454 CAGAAATCAAGACAAGGATTTGGA-GAAGACTTACCGACGAGAAGCCAAGAATT 506
> Ahg492269 jgi|Araly1|492269|fgenesh2_kg.7__1702__AT4G25580.1
Length=2012
Score = 52.8 bits (28), Expect = 1e-05
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 747 TCTAATTATCAGTCCAAAGTTACTGATC 774
||||||||||||||||||||||||||||
Sbjct 906 TCTAATTATCAGTCCAAAGTTACTGATC 933
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94235266130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5