BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52420.1
Length=1034
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495312 jgi|Araly1|495312|fgenesh2_kg.8__1128__AT5G52420.1 1291 0.0
> Ahg495312 jgi|Araly1|495312|fgenesh2_kg.8__1128__AT5G52420.1
Length=994
Score = 1291 bits (699), Expect = 0.0
Identities = 884/967 (91%), Gaps = 37/967 (4%)
Strand=Plus/Plus
Query 1 ACATTTTCCCGAGAAAACaaaaaaa--aaaaaC-TTACACCAAAACGATGTCTGGAGGTG 57
||||||||||||||||| ||||||| ||| ||||||||||| |||||||||||||
Sbjct 1 ACATTTTCCCGAGAAAA-AAAAAAATCCTTAACAGTACACCAAAACAATGTCTGGAGGTG 59
Query 58 TCGGTCCAACGTACAACGACATAACCTTACCCAaagaagaagaagaagaaCATCAAACCC 117
||||||||||||||||||||||||||||| || || |||||||| ||||||||||||
Sbjct 60 TCGGTCCAACGTACAACGACATAACCTTA-CC----AA-AAGAAGAACAACATCAAACCC 113
Query 118 AATCCACCTCAACAGTATCATCCACCGGAAAACCCGCCGGATTCTTCTCATTCCGACAAC 177
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 114 AA---ACCTCAACAGTATCATCCACCGGAAAACCCGCCGGATTCTTCTCATTCCGACAAC 170
Query 178 TAAACATCCTCGCAATAATCATCGTTCTCTCCGCAAGTGGTCTCGTAACAATCCAAGATT 237
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 171 TAAACATCCTTGCAATAATCATCGTTCTCTCCGCAAGTGGTCTCGTAACAATCCAAGATT 230
Query 238 TCATATTCACGATCCTCACTCTCATCTACTTCTTCTTCCTCTCGAAACTTATCTTCCCAC 297
|||||||||| |||||||||||||||||||||||| || |||| ||||| |||||||| |
Sbjct 231 TCATATTCACAATCCTCACTCTCATCTACTTCTTCGTCTTCTCAAAACTAATCTTCCCTC 290
Query 298 CACACAACAATCCAAACCGTGACGCTCCTCTCACAAGCTCCACAAACAAAATCTTCCGTA 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 CACACAACAATCCAAACCGTGACGCTCCTCTCACAAGCTCCACAAACAAAATCTTCCGTA 350
Query 358 TCTATGTTACAGCGGCGGGGATCGTCGGGCTTATCATTCCGATCTGTTACATCTTCGAAG 417
||||||| ||| |||||||||||||||| ||||| ||||||||||||||||| |||||||
Sbjct 351 TCTATGTAACATCGGCGGGGATCGTCGGACTTATAATTCCGATCTGTTACATATTCGAAG 410
Query 418 GAATCGTTGAGGATGATAAGAACGGTGTTAGCGCAGCTGCACCGCACGTGTTTCTTTTAG 477
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 411 GAATCGTGGAGGATGATAAGAACGGTGTGAGCGCAGCTGCACCGCACGTGTTTCTTTTAG 470
Query 478 CGAGTCAGATTTTTATGGAAGGATTAGCGACCATGTTTGGCTTCTCTGCTCCGGCGAGGA 537
|| ||||| |||||||||||||||| ||| | ||||||||||||||||||||||||||||
Sbjct 471 CGTGTCAGGTTTTTATGGAAGGATTGGCGTCGATGTTTGGCTTCTCTGCTCCGGCGAGGA 530
Query 538 TTCTTGTTCCGATTGTTTACAACGCCAGGAGGGTTTTGACTCTTGTGGAGTGGATTATGA 597
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 531 TTCTTGTTCCGATTGTTTATAACGCCAGGAGGGTTTTGACTCTTGTGGAGTGGATTATGA 590
Query 598 GTGAGTTCTCGAGGGAGGATGTGACGGGGACGGTTTCTGCGCGGCGGATGTATGCCGGGA 657
||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||| |
Sbjct 591 GTGAGTTCTCGAGGGAGGATGGGACGGGGACGGTTTCGGCGCGGCGGATGTACGCCGGAA 650
Query 658 AAGTTTTGGCGGCGGCT-AATTTAGGGATTTGGTCGTTTAATCTCTTTGGTGTTTTGATT 716
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 AAGTTTTGGCGGCGG-TGAATTTAGGGATTTGGTCGTTTAATCTCTTTGGTGTTTTGATT 709
Query 717 CCGGTTTATCTACCCAGAGCGTTT-AAGAGGTATTACGGTTCTGATAAGGAGGATTGAAA 775
|||||||||||||| ||||| ||| ||||||||||||||||||||||||||| |||||||
Sbjct 710 CCGGTTTATCTACCGAGAGC-TTTCAAGAGGTATTACGGTTCTGATAAGGAGAATTGAAA 768
Query 776 TCCCGGTTTAGTTCCGGTTCCAATAAGGAGAGTCAAAACCCGGTTTAATTCCT-TTGTGG 834
||||||||||||||||||| ||||||||| | |||||||||||| |||| || | |
Sbjct 769 -CCCGGTTTAGTTCCGGTTCTGATAAGGAGAATTGAAACCCGGTTTAGTTCCGGTT-TAG 826
Query 835 TT-CACAGCTCTTGTTGTTTTC---CC--TTTTTGTTCTGTATA-TTATTTCGATGTTTT 887
|| | ||||||| ||||||||| || ||||| ||||||||| |||||| ||||||||
Sbjct 827 TTTC-CAGCTCTGGTTGTTTTCTTTCCCATTTTT-TTCTGTATAATTATTT-GATGTTTT 883
Query 888 CTTTTGAACAATTCAGTTTATGTAGTAGTTCACAGTTGTA-TTAGATTTCTTACGATAAT 946
|||| ||||||| ||||||||||||| | |||||| || |||||||||||| || ||
Sbjct 884 CTTT-GAACAATCCAGTTTATGTAGT--T-CACAGT-GTTGTTAGATTTCTTATGA-AAG 937
Query 947 AACCGAA 953
||| |||
Sbjct 938 AACAGAA 944
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38466023253
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5