BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52510.1
Length=2254
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495319 jgi|Araly1|495319|fgenesh2_kg.8__1135__AT5G52510.1 2643 0.0
Ahg497317 jgi|Araly1|497317|fgenesh2_kg.205__1__AT5G52510.1 2126 0.0
> Ahg495319 jgi|Araly1|495319|fgenesh2_kg.8__1135__AT5G52510.1
Length=2190
Score = 2643 bits (1431), Expect = 0.0
Identities = 1896/2107 (90%), Gaps = 85/2107 (4%)
Strand=Plus/Plus
Query 15 tctctctctaaatttctcagagtatctaatctctctctcttctctcGTTCCATATTATCA 74
||||||||| ||||||||||||||||||| | ||||||||||||| |||||||||||||
Sbjct 1 TCTCTCTCTCTATTTCTCAGAGTATCTAAT-T-TCTCTCTTCTCTCTTTCCATATTATCA 58
Query 75 TGCGTTTCATAATTCAGTAAATTTTTTGAAATCTGATCTGTTCTTTCTGAAGCTTTTGAG 134
|||||||| | | | | ||| | ||| | | | ||||||||| ||||||||||
Sbjct 59 TGCGTTTC---A-T---T--A--TTTGGTAAT-T--T-TTTTCTTTCTG-AGCTTTTGAG 102
Query 135 AGAATAATAAAAAATGGAATCTGGTTTCTCCGGCGGTGGTGGTGGGTCGGATTTTTACGG 194
|| ||||||||||||||||||||||||||||||| |||||||||||||| |||| |
Sbjct 103 AG---AATAAAAAATGGAATCTGGTTTCTCCGGCGGCGGTGGTGGGTCGGA-TTTT-C-A 156
Query 195 CGGTGGTGGTGGTAGATCTATACCTGGAGGTCCAGGAACTGTTATCAACGTCGGTAACAA 254
||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| ||
Sbjct 157 CGGTGGTGGTGGTAGATCTATACCTGGAGGTCCCGGAACTGTAATCAACGTTGGTAATAA 216
Query 255 TAATCCTCAGA-CGACGTATAGAAACCAGATTCCTGGAATCTTCTTTGATCAGATCGGAA 313
||||||||| | |||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 217 TAATCCTCA-ACCGACGTATAGAAACCAAATTCCTGGAATCTTCCTTGATCAGATCGGAA 275
Query 314 ACAGAGTCGCCGGCGGTAATGGATTCTCCGGGAAAAGGACTTTAGCAGATTTTCAAGCGG 373
|||||||| ||| ||||||||||||| |||||||| | ||||||||||||||||||||||
Sbjct 276 ACAGAGTCTCCGCCGGTAATGGATTCGCCGGGAAACGTACTTTAGCAGATTTTCAAGCGG 335
Query 374 CTCAG------caacatc-a-a-c-a-a-c-a-a-caacaacaacaacCGTTTTATAGTC 418
||||| ||||| | | | | | | | | | |||||||||||||||||||||| ||
Sbjct 336 CTCAGCAATATCAACAGCAACAGCAACAGCAACAGCAACAACAACAACCGTTTTATAATC 395
Query 419 AAGCAGCTCTCAACGCTTTTCTTTCAAGGTCTGTGAAGCCTCGAAATTATCAGAATTTTC 478
|||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||
Sbjct 396 AAGCAGCTCTCAACGCTTTTCTTTTAAGGTCCGTGAAGCCTAGAAATTATCAGAATTTTC 455
Query 479 AATCTCCGTCGCCGATGATTGATCTCACGTCGGTGAATGATATGAGTTTGTTTGGTGGTT 538
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 456 AATCTCCGTCGCCGATGATCGATCTCACGTCGGTGAATGATATGAGTTTGTTTGGTGGTT 515
Query 539 CTGGTTCATCTCAGCGTTACGGTTTACCGGTTCCCAGGTCTCAGACGCAACAGCAACAAT 598
||||||| |||||||||||||||| |||||||| || |||||||||||| ||||| ||||
Sbjct 516 CTGGTTCGTCTCAGCGTTACGGTTCACCGGTTCTCAAGTCTCAGACGCAGCAGCATCAAT 575
Query 599 CGGATTACGGTTTATTTGGTGGGATCCGAATGGGAAT-CGGGTCGGGTATTAATAATTAT 657
|| ||| ||||||||||||||||||||||||||| || ||||||| ||| |||||| |
Sbjct 576 CGAATTTCGGTTTATTTGGTGGGATCCGAATGGG-ATACGGGTCGAGTAATAATAA-CA- 632
Query 658 CCA--ACATTAACCGGCGTTCCGTGTATTGAACCGGTTCA--A-AACCGGGTTCATGAAT 712
|| || |||||||||||||| |||||||||| |||||| | ||||||||||||||||
Sbjct 633 ACATGACGTTAACCGGCGTTCCTTGTATTGAACAGGTTCAGCATAACCGGGTTCATGAAT 692
Query 713 CGGAGAACATGTTGAATAGTTTAAGAGAGCTTGAGAAACAGCTTTTAGATGATGACGATG 772
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 693 CGGAGAACATGTTGAATAGTTTAAGAGAGCTAGAGAAACAGCTTTTAGATGATGACGATG 752
Query 773 AGAGTGGTGGTGATGATGACGTGTCAGTTATAACAAATTCAAATTCCGATTGGATTCAAA 832
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 753 AGAGTGGTGGTGATGATGACGTGTCAGTTATCACAAATTCAAATTCCGATTGGATTCAAA 812
Query 833 ATCTCGTGACTCCGAACCCGAACCCGAACCCGGTTTTGTCTTTTTCACCGAGC-TCTTCT 891
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 813 ATCTCGTGACTCCGAACCCGAACCCGAACCCGGTTTTGTCTTTTTCACCGA-CTTCTTCT 871
Query 892 TCTTCGTCTTCTTCGCCT-TCTACAGCTTCGACGACGACATCGGTATGTTCTA-GGCAAA 949
|||||||||||||| || |||||||||||||||||||||||||||||||| | | ||||
Sbjct 872 TCTTCGTCTTCTTC-ACTATCTACAGCTTCGACGACGACATCGGTATGTTC-ACGACAAA 929
Query 950 CGGTTATGGAAATCGCGACGGCGATCGCGGAAGGGAAAACAGAGATAGCGACGGAGATTT 1009
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 930 CGGTTATGGAAATCGCGACGGCGATCGCGGAAGGGAAAACGGAGATAGCGACGGAGATTT 989
Query 1010 TGGCGCGTGTTTCTCAAACGCCTAATCTTGAGAGGAATTCAGAGGAGAAGCTTGTTGATT 1069
|||||||||||||||| |||| ||||||||||||| ||||||||||||||| ||||| |
Sbjct 990 TGGCGCGTGTTTCTCAGTCGCCGAATCTTGAGAGGAGTTCAGAGGAGAAGCTGGTTGAGT 1049
Query 1070 TCATGGTGGCTGCGCT----T--C-G----AT----C-GAG-G-ATAGCTTCTCCAGTGA 1111
|||||||| | ||||| | | | || | ||| | |||||||||| | ||
Sbjct 1050 TCATGGTGACGGCGCTACGATCGCGGATTAATCAGGCTGAGAGTCTAGCTTCTCCGGCGA 1109
Query 1112 CGGAATTGTATGGGAAGGAGCATTTAATCTCGACTCAATTGCTCTACGAGCTCTCTCCTT 1171
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1110 CGGAATTGTATCGGAAGGAGCATTTAATCTCGACTCAATTGCTCAACGAGCTCTCTCCTT 1169
Query 1172 GTTTCAAACTCGGTTTCGA-GGCCGCGAATCTCGCCATTCTCGACGCCGCCGATAACAAC 1230
||| ||||||||||||| | ||| |||||||||||||||||| ||||||||| |||||||
Sbjct 1170 GTTACAAACTCGGTTTC-ACGGCGGCGAATCTCGCCATTCTCAACGCCGCCGGTAACAAC 1228
Query 1231 GACGGTGGAATGATGATACCGCACGTTATCGATTTCGATATCGGAGAAGGTGGACAATAC 1290
|||| || |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1229 GACGCAGGGATGATGATGTTGCACGTTATCGATTTCGATATCGGAGAAGGTGGACAATAT 1288
Query 1291 GTTAACCTTCTCCGTACATTATCCACGCGCCGGAATGGTAA-AAGTCAGAGTCAGAATTC 1349
||||||||||||| ||| | |||||||||||||||||||| || ||||| |||||||||
Sbjct 1289 GTTAACCTTCTCCAAACACTCTCCACGCGCCGGAATGGTAAGAA-TCAGAATCAGAATTC 1347
Query 1350 TCCGGTGGTTAAGATCACCGCCGTGGCGAACAACGTTTACGGATGTTTAGTCGATGACGG 1409
|||||||||||||||||| |||||| |||||||||| ||||||| ||| ||||||| |||
Sbjct 1348 TCCGGTGGTTAAGATCACAGCCGTGACGAACAACGTCTACGGATTTTTGGTCGATGGCGG 1407
Query 1410 TGGAGAAGAGAGGTTAAAAGCCGTCGGAGATTTGTTGAGCCAACTCGGTGATCGACTCGG 1469
||||||||||||||| |||| |||||||||| ||||||||||||||||| ||||||||||
Sbjct 1408 TGGAGAAGAGAGGTTGAAAGTCGTCGGAGATCTGTTGAGCCAACTCGGTAATCGACTCGG 1467
Query 1470 TATCTCCGTAAGTTTCAACGTGGTGACGAGTTTACGACTCGGTGATCTGAATCGTGAATC 1529
||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 1468 TATCTCCGTGAGTTTCAACGTGGTGGCGAGTTTACGACTCGGTGATCTGAGTCGTGAATC 1527
Query 1530 TCTCGGGTGTGATCCCGACGAGACTTTGGCTGTGAACTTAGCTTTCAAGCTTTATCGTGT 1589
||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||
Sbjct 1528 GCTCGGGTGTGATCCCGACGAGCCGTTGGCCGTGAACTTAGCTTTCAAGCTTTATCGTGT 1587
Query 1590 TCCCGACGAAAGCGTATGCACGGAGAATCCAAGAGACGAACTTCTCCGGCGCGTGAAGGG 1649
||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct 1588 TCCCGACGAAAGCGTATGCACAGAGAATCCGAGAGACGAGCTTCTCCGGCGCGTGAAGGG 1647
Query 1650 ACTTAAACCGCGCGTGGTTACTCTAGTGGAGCAAGAAATGAATTCGAATACGGCGCCGTT 1709
|||||| ||||||||||| ||| ||||||| |||||||||||||| |||||||| |||||
Sbjct 1648 ACTTAAGCCGCGCGTGGTGACTTTAGTGGAACAAGAAATGAATTCTAATACGGCACCGTT 1707
Query 1710 TTTAGGGAGAGTGAGTGAGTCATGCGCGTGTTACGGTGCGTTGCTTGAGTCGGTCGAGTC 1769
||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1708 TTTAGGGCGAGTGAGTGAGTCATGCGCGTGTTACGGTGCATTGCTTGACTCGGTCGAGTC 1767
Query 1770 TACGGTTCCTAGTACGAATTCCGACCGTGCCAAAGTTGAGGAAGGAATTGGCCGGAAGCT 1829
|| ||||||||| |||||| ||||| | ||| || |||||||||||||||||||||||
Sbjct 1768 GACCGTTCCTAGTTTGAATTCGGACCGCGTCAAGGTCGAGGAAGGAATTGGCCGGAAGCT 1827
Query 1830 AGTAAACGCGGTGGCGTGCGAAGGAATCGATCGTATAGAGCGGTGCGAGGTGTTCGGGAA 1889
| ||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 1828 AATAAACGCGGTGGCGTGCGAAGGAATCGATCGGATTGAGCGGTGCGAGGTTTTCGGGAA 1887
Query 1890 ATGGCGAATGCGGATGAGCATGGCTGGGTTTGAGTTAATGCCATTGAGTGAGAAGATAGC 1949
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1888 ATGGCGAATGCGGATGAGCATGGCTGGGTTCGAGTTAATGCCATTGAGTGAGAAGATAGC 1947
Query 1950 GGAGTCGA-TGAAGAGTCGTGGAAACCGAGTC-CACCCGGGCTTTACCGTTAAAGAAGAT 2007
|| ||| | || | | ||||||| || | |||||||||||||||||||||||||||
Sbjct 1948 TGA-CCGACTCAATA-AC--GGAAACCTAG-CTCACCCGGGCTTTACCGTTAAAGAAGAT 2002
Query 2008 AACGGAGGTGTGTGCTTTGGTTGGATGGGACGGGCACTCACTGTCGCATCCGCTTGGCGT 2067
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 2003 AACGGAGGTGTGTGCTTTGGTTGGATGGGACGGACACTCGCTGTCGCATCCGCTTGGCGT 2062
Query 2068 TAACTTC 2074
||| |||
Sbjct 2063 TAATTTC 2069
Score = 187 bits (101), Expect = 3e-46
Identities = 124/134 (93%), Gaps = 6/134 (4%)
Strand=Plus/Plus
Query 2115 ttaattttcga-gattattctgatattattatcattgtgattttccatttcGAAAAGTGT 2173
|||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2062 TTAA-TTTCGAGGATTATTCTGATAATATTATCATTGTGATTTTCCATTTCGAAAAGTGT 2120
Query 2174 AGGAATCTTATGTAACAAAGaaaaaaaaaaGACTTTTATGTTTTTCTAATAATAAAAGAA 2233
|||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||
Sbjct 2121 AGGAATCTTATGTAACAAAGAAAAAAAA----CTTTTATATTTTACTAATAATAAAAGAA 2176
Query 2234 AGAGTGATTGGGTT 2247
||| ||||||||||
Sbjct 2177 AGAATGATTGGGTT 2190
> Ahg497317 jgi|Araly1|497317|fgenesh2_kg.205__1__AT5G52510.1
Length=1987
Score = 2126 bits (1151), Expect = 0.0
Identities = 1445/1580 (91%), Gaps = 47/1580 (3%)
Strand=Plus/Plus
Query 697 AACCGGGTTCATGAATCGGAGAACATGTTGAATAGTTTAAGAGAGCTTGAGAAACAGCTT 756
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 AACCGGATTCATGAATCGGAGAACATGTTGAATAGTTTAAGAGAGCTTGAGAAACAGCTT 485
Query 757 TTAGATGATGACGATGAGAGTGGTGGTGATGATGACGTGTCAGTTATAACAAATTCAAAT 816
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 486 TTAGATGATGACGATGAGAGTGGTGGTGATGATGACGTGTCAGTTATCACAAATTCAAAT 545
Query 817 TCCGATTGGATTCAAAATCTCGTGACT------CCGAACCCGAACCCGAACCCGGTTTTG 870
|||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 546 TCCGATTGGATTCAAAATCTTGTGACTCCGAACCCGAACCCGAACCCGAACCCGGTTTTG 605
Query 871 TCTTTTTCACCGAGCTCTTCTTCTTCGTCTTCTTCGCCTTCTACAGCTTCGACGACGACA 930
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 606 TCTTTTTCACCGA---CTTCTTCTTCGTCTTCTTCACCTTCTACAGCTTCGACGACGACA 662
Query 931 TCGGTATGTTCTAGGCAAACGGTTATGGAAATCGCGACGGCGATCGCGGAAGGGAAAACA 990
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 TCGGTATGTTCAAGGCAAACGGTTATGGAAATCGCGACGGCGATCGCGGAAGGGAAAACG 722
Query 991 GAGATAGCGACGGAGATTTTGGCGCGTGTTTCTCAAACGCCTAATCTTGAGAGGAATTCA 1050
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 723 GAGATAGCGACGGAGATTTTGGCGCGTGTTTCTCAGACGCCGAATCTTGAGAGGAATTCA 782
Query 1051 GAGGAGAAGCTTGTTGATTTCATGGTGGCTGCGCTTCGAT--C-G-------A----G-G 1095
||||||||||| ||||||||||||||| | |||||||||| | | | | |
Sbjct 783 GAGGAGAAGCTGGTTGATTTCATGGTGACGGCGCTTCGATCGCGGATTAATCAGGCTGAG 842
Query 1096 A---TAGCTTCTCCAGTGACGGAATTGTATGGGAAGGAGCATTTAATCTCGACTCAATTG 1152
| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 AGTCTAGCTTCTCCGGCGACGGAATTGTATGGGAAGGAGCATTTAATCTCGACTCAATTG 902
Query 1153 CTCTACGAGCTCTCTCCTTGTTTCAAACTCGGTTTCGA-GGCCGCGAATCTCGCCATTCT 1211
||| |||||||||||||||||| ||||||||||||| | ||| |||||||||||||||||
Sbjct 903 CTCAACGAGCTCTCTCCTTGTTACAAACTCGGTTTC-ACGGCGGCGAATCTCGCCATTCT 961
Query 1212 CGACGCCGCCGATAACAACGACGGTGGAATGATGATACCGCACGTTATCGATTTCGATAT 1271
| ||||||||| ||||||||||| || |||||||| |||||||||||||||||||||
Sbjct 962 CAACGCCGCCGGTAACAACGACGCAGGGATGATGATGTTGCACGTTATCGATTTCGATAT 1021
Query 1272 CGGAGAAGGTGGACAATACGTTAACCTTCTCCGTACATTATCCACGCGCCGGAATGGTAA 1331
|||||||||||||||||| ||||||||||||| ||| | ||||||||||||||||||||
Sbjct 1022 CGGAGAAGGTGGACAATATGTTAACCTTCTCCAAACACTCTCCACGCGCCGGAATGGTAA 1081
Query 1332 -AAGTCAGAGTCAGAATTCTCCGGTGGTTAAGATCACCGCCGTGGCGAACAACGTTTACG 1390
|| ||||| ||||||||||||||||||||||||||| |||||| |||||||||| ||||
Sbjct 1082 GAA-TCAGAATCAGAATTCTCCGGTGGTTAAGATCACAGCCGTGACGAACAACGTCTACG 1140
Query 1391 GATGTTTAGTCGATGACGGTGGAGAAGAGAGGTTAAAAGCCGTCGGAGATTTGTTGAGCC 1450
||| ||| ||||||| |||||||||||||||||| |||| |||||||||| |||||||||
Sbjct 1141 GATTTTTGGTCGATGGCGGTGGAGAAGAGAGGTTGAAAGTCGTCGGAGATCTGTTGAGCC 1200
Query 1451 AACTCGGTGATCGACTCGGTATCTCCGTAAGTTTCAACGTGGTGACGAGTTTACGACTCG 1510
|||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 1201 AACTCGGTAATCGACTCGGTATCTCCGTGAGTTTCAACGTGGTGGCGAGTTTACGACTCG 1260
Query 1511 GTGATCTGAATCGTGAATCTCTCGGGTGTGATCCCGACGAGACTTTGGCTGTGAACTTAG 1570
||||||||| ||||||||| ||||||||||||||||||||| | ||||| ||||||||||
Sbjct 1261 GTGATCTGAGTCGTGAATCGCTCGGGTGTGATCCCGACGAGCCGTTGGCCGTGAACTTAG 1320
Query 1571 CTTTCAAGCTTTATCGTGTTCCCGACGAAAGCGTATGCACGGAGAATCCAAGAGACGAAC 1630
|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
Sbjct 1321 CTTTCAAGCTTTATCGTGTTCCCGACGAAAGCGTATGCACAGAGAATCCGAGAGACGAGC 1380
Query 1631 TTCTCCGGCGCGTGAAGGGACTTAAACCGCGCGTGGTTACTCTAGTGGAGCAAGAAATGA 1690
||||||||||||||||||||||||| ||||||||||| ||| ||||||| ||||||||||
Sbjct 1381 TTCTCCGGCGCGTGAAGGGACTTAAGCCGCGCGTGGTGACTTTAGTGGAACAAGAAATGA 1440
Query 1691 ATTCGAATACGGCGCCGTTTTTAGGGAGAGTGAGTGAGTCATGCGCGTGTTACGGTGCGT 1750
|||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 1441 ATTCTAATACGGCACCGTTTTTAGGGCGAGTGAGTGAGTCATGCGCGTGTTACGGTGCAT 1500
Query 1751 TGCTTGAGTCGGTCGAGTCTACGGTTCCTAGTACGAATTCCGACCGTGCCAAAGTTGAGG 1810
||||||| ||||||||||| || ||||||||| |||||| ||||| | ||| || ||||
Sbjct 1501 TGCTTGACTCGGTCGAGTCGACCGTTCCTAGTTTGAATTCGGACCGCGTCAAGGTCGAGG 1560
Query 1811 AAGGAATTGGCCGGAAGCTAGTAAACGCGGTGGCGTGCGAAGGAATCGATCGTATAGAGC 1870
|||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||
Sbjct 1561 AAGGAATTGGCCGGAAGCTAATAAACGCGGTGGCGTGCGAAGGAATCGATCGGATTGAGC 1620
Query 1871 GGTGCGAGGTGTTCGGGAAATGGCGAATGCGGATGAGCATGGCTGGGTTTGAGTTAATGC 1930
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1621 GGTGCGAGGTTTTCGGGAAATGGCGAATGCGGATGAGCATGGCTGGGTTCGAGTTAATGC 1680
Query 1931 CATTGAGTGAGAAGATAGCGGAGTCGA-TGAAGAGTCGTGGAAACCGAGTC-CACCCGGG 1988
||||||||||||||||||| || ||| | || | | ||||||| || | ||||||||
Sbjct 1681 CATTGAGTGAGAAGATAGCTGA-CCGACTCAATA-AC--GGAAACCTAG-CTCACCCGGG 1735
Query 1989 CTTTACCGTTAAAGAAGATAACGGAGGTGTGTGCTTTGGTTGGATGGGACGGGCACTCAC 2048
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
Sbjct 1736 CTTTACCGTTAAAGAAGATAACGGAGGTGTGTGCTTTGGTTGGATGGGACGGACTCTCGC 1795
Query 2049 TGTCGCATCCGCTTGGCGTTAACTTCACACACTCttttttttcttcttattattaccata 2108
|||||||||||||||||||||| || ||||||||||||||| || || |||||||||||
Sbjct 1796 TGTCGCATCCGCTTGGCGTTAA-TT-TCACACTCTTTTTTTT-TT-TT-TTATTACCATA 1850
Query 2109 ttattattaattttcga-gattattctgatattattatcattgtgattttccatttcGAA 2167
||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1851 TTATTATTATTTTTCGAGGATTATTCTGATAATATTATCATTGTGATTTTCCATTTCGAA 1910
Query 2168 AAGTGTAGGAATCTTATGTAACAAAGaaaaaaaaaaGACTTTTATGTTTTTCTAATAATA 2227
||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||
Sbjct 1911 AAGTGTAGGAATCTTATGTAACAAAGAAAAAAAAA---CTTTTATATTTTACTAATAATA 1967
Query 2228 AAAGAAAGAGTGATTGGGTT 2247
||||||||| ||||||||||
Sbjct 1968 AAAGAAAGAATGATTGGGTT 1987
Score = 436 bits (236), Expect = 3e-121
Identities = 379/440 (86%), Gaps = 41/440 (9%)
Strand=Plus/Plus
Query 26 atttctcagagtatctaatctctctctcttctctcGTTCCATATTATCATGCGTTTCATA 85
||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||
Sbjct 1 ATTTCTCAGAGTATCTAAT-T-TCTCTCTTCTCTCTTTCCATATTATCATGCGTTTC--- 55
Query 86 ATTCAGTAAATTTTTTGAAATCTGATCTGTTCTTTCTGAAGCTTTTGAGAGAATAATAAA 145
| | | | ||| | ||| | | | ||||||||| |||||||||||| ||||||
Sbjct 56 A-T---T--A--TTTGGTAAT-T--T-TTTTCTTTCTG-AGCTTTTGAGAG---AATAAA 99
Query 146 AAATGGAATCTGGTTTCTCCGGCGGTGGTGGTGGGTCGGATTTTTACGGCGGTGGTGGTG 205
||||||||||||||||||||||||| |||||||||||||| |||| | |||||||||||
Sbjct 100 AAATGGAATCTGGTTTCTCCGGCGGCGGTGGTGGGTCGGA-TTTT-C-ACGGTGGTGGTG 156
Query 206 GTAGATCTATACCTGGAGGTCCAGGAACTGTTATCAACGTCGGTAACAATAATCCTCAGA 265
|||||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||| |
Sbjct 157 GTAGATCTATACCTGGAGGTCCCGGAACTGTAATCAACGTTGGTAATAATAATCCTCA-A 215
Query 266 C-GACGTATAGAAACCAGATTCCTGGAATCTTCTTTGATCAGATCGGAAACAGAGTCGCC 324
| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 216 CCGACGTATAGAAACCAAATTCCTGGAATCTTCCTTGATCAGATCGGAAACAGAGTCTCC 275
Query 325 GGCGGTAATGGATTCTCCGGGAAAAGGACTTTAGCAGATTTTCAAGCGGCTCAGcaacat 384
| ||||||||||||| |||||||| | |||||||||||||||||||||||||||||| ||
Sbjct 276 GCCGGTAATGGATTCGCCGGGAAACGTACTTTAGCAGATTTTCAAGCGGCTCAGCAATAT 335
Query 385 caaca--a-ca--a-ca--a-ca--a-caacaac--C-GTTTTATAGTCAAGCAGCTCTC 429
||||| | || | || | || | ||||||| | |||||||| |||||||||||||
Sbjct 336 CAACAGCAACAGCAACAGCAACAGCAACAACAACAACCGTTTTATAATCAAGCAGCTCTC 395
Query 430 AACGCTTTTCTTTCAAGGTC 449
||||||||||||| ||||||
Sbjct 396 AACGCTTTTCTTTTAAGGTC 415
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84865065860
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5