BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G52570.1 Length=1145 Score E Sequences producing significant alignments: (Bits) Value Ahg495328 jgi|Araly1|495328|fgenesh2_kg.8__1144__AT5G52570.1 1421 0.0 Ahg492254 jgi|Araly1|492254|fgenesh2_kg.7__1687__AT4G25700.1 749 0.0 > Ahg495328 jgi|Araly1|495328|fgenesh2_kg.8__1144__AT5G52570.1 Length=1030 Score = 1421 bits (769), Expect = 0.0 Identities = 925/997 (93%), Gaps = 24/997 (2%) Strand=Plus/Plus Query 83 TAAAGTTTCATAAAACCTCAACGAACTCCTTCCATGGCAGCAGGACTATCAACAATCGCC 142 |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| Sbjct 21 TAAAGTTTCATAAAACCTCAACGAGCTCCTTCCATGGCAGCAGGACTCTCAACAATCGCC 80 Query 143 GTAACACTCAAACCACTCAACCGCTCTTCTTTCTCCGCAAACCACCCTATATCCACCGCA 202 |||||||||||||||||| | | | | | || |||||||||||| ||| ||||| Sbjct 81 GTAACACTCAAACCACTC-A-C-C-C-GC---CT----AAACCACCCTATCTCCGCCGCA 128 Query 203 GTTTTCCCTCCATCTCTAAGATTCAACGGCTTCCGACGTCGAAAGATTCTCACCGTTTGT 262 ||||||||||||||||| |||||||||||||| ||||||||||||| |||||| ||||| Sbjct 129 GTTTTCCCTCCATCTCTCAGATTCAACGGCTTAAGACGTCGAAAGATCCTCACCATTTGT 188 Query 263 TTCGTCGTGGAAGAACGGAAACAAAGCTCTCCCATGGACGATGACAACAAACCAGAAAGC 322 || ||||| |||||||||||||| ||||||||||||||| | ||||||| |||||| Sbjct 189 TTTGTCGTTGAAGAACGGAAACAGAGCTCTCCCATGGAC---G---ACAAACCGGAAAGC 242 Query 323 ACGACAAGCTCTTCTGAGATCTTGATGACGTCGCGGCTTCTCAAGAAAGCGGAGAAGAAG 382 ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 243 ACGACGAGCTCTTCTGAGATCTTGATGACGTCGCGGCTTCTCAAGAAAGCAGAGAAGAAG 302 Query 383 AAATCAGAGAGGTTCACTTATTTAATAGCAGCTGTGATGTCGAGCTTTGGTATCACTTCT 442 ||||||||||| ||||||||| |||| |||||||||||||| ||||||||| |||||||| Sbjct 303 AAATCAGAGAGATTCACTTATCTAATCGCAGCTGTGATGTCAAGCTTTGGTGTCACTTCT 362 Query 443 ATGGCTATAATGGCTGTTTATTACCGATTTTCTTGGCAAATGAAGGGAGGTGAAGTGTCT 502 |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| || Sbjct 363 ATGGCTATCATGGCTGTTTATTATCGATTTTCTTGGCAAATGAAGGGAGGTGAAGTGCCT 422 Query 503 GTGTTAGAGATGTTTGGTACATTTGCTCTTTCCGTTGGTGCTGCCGTTGGGATGGAGTTT 562 | | |||||||||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 423 TTATCAGAGATGTTTGGTACATTTGCTCTCTCAGTTGGTGCTGCCGTTGGGATGGAGTTT 482 Query 563 TGGGCAAGATGGGCTCATAGAGCTCTTTGGCATGATTCTTTATGGAACATGCATGAGTCA 622 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 483 TGGGCAAGATGGGCTCATAGAGCTCTTTGGCACGATTCTTTATGGAACATGCATGAGTCT 542 Query 623 CATCACAAACCAAGAGAAGGAGCGTTTGAGTTAAACGATGTGTTTGCTATAACAAACGCG 682 |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| Sbjct 543 CATCACAAACCAAGAGAAGGAGCGTTTGAGTTAAACGATGTGTTCGCTATAATAAACGCG 602 Query 683 GTTCCTGCGATTGGTCTACTCTATTATGGATTCTTGAATAAAGGACTTGTTCCTGGTCTC 742 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 603 GTTCCTGCGATTGGTCTACTCTATTATGGATTCTTTAATAAAGGACTTGTTCCTGGTCTC 662 Query 743 TGCTTCGGTGCCGGACTGGGAATAACGATGTTTGGAATGGCTTACATGTTCGTTCACGAT 802 ||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||| Sbjct 663 TGCTTCGGTGCCGGACTGGGAATAACGGTGTTTGGAATGGCTTACATGTTTGTCCACGAT 722 Query 803 GGACTTGTGCACAAGAGATTCCCTGTAGGTCCCATTGCCAACGTTCCTTACCTTCGAAAG 862 ||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 723 GGACTCGTGCACAAGAGATTCCCTGTCGGTCCCATTGCCAACGTTCCTTACCTCCGAAAG 782 Query 863 GTCGCCGCCGCTCACCAGCTACACCACACAGACAAATTCAAAGGTGTACCATATGGGCTG 922 ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 783 GTCGCGGCCGCTCACCAGCTACACCACACAGACAAATTCAAGGGTGTACCATATGGGCTG 842 Query 923 TTTCTTGGACCAAAGGAAGTAGAAGAAGTGGGAGGAAAAGAAGAGTTGGAGAAAGAGATA 982 ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 843 TTTCTTGGACCCAAGGAAGTGGAAGAAGTGGGAGGAAAAGAAGAGTTGGAGAAAGAGATA 902 Query 983 AGCCGGAGAATCAAATTATACAACAAGGGTTCTTCTACCTCTTAATTGCTACA-AACCC- 1040 ||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||| Sbjct 903 AGCCGGAGAATCAAATTATACAACAAGGGTTCTTCTACCTCCTAATTGCTATATAACCCC 962 Query 1041 AATTTTACTTCTTTGAT----GTTTTTGTAATACATT 1073 |||||||||||||| || |||||||||||| ||| Sbjct 963 AATTTTACTTCTTTTATATATGTTTTTGTAATATATT 999 Score = 58.4 bits (31), Expect = 1e-07 Identities = 31/31 (100%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 1104 AAAAATGACGTAGAAGAAAGAGTCAGGCTAA 1134 ||||||||||||||||||||||||||||||| Sbjct 1000 AAAAATGACGTAGAAGAAAGAGTCAGGCTAA 1030 > Ahg492254 jgi|Araly1|492254|fgenesh2_kg.7__1687__AT4G25700.1 Length=1159 Score = 749 bits (405), Expect = 0.0 Identities = 567/647 (88%), Gaps = 4/647 (1%) Strand=Plus/Plus Query 366 AGAAAGCGGAGAA-GAAGAAATCAGAGAGGTTCACTTATTTAATAGCAGCTGTGATGTCG 424 ||||| ||| || ||||||||||||||||| ||||||| |||| || || ||| |||| Sbjct 290 AGAAATTGGA-AAGGAAGAAATCAGAGAGGTCCACTTATCTAATCGCTGCAGTGTTGTCA 348 Query 425 AGCTTTGGTATCACTTCTATGGCTATAATGGCTGTTTATTACCGATTTTCTTGGCAAATG 484 |||||||||||||||||||||||| | ||||||||||| ||| |||| |||||||||||| Sbjct 349 AGCTTTGGTATCACTTCTATGGCTGTTATGGCTGTTTACTACAGATTCTCTTGGCAAATG 408 Query 485 AAGGGAGGTGAAG-TGTCTGTGTTAGAGATGTTTGGTACATTTGCTCTTTCCGTTGGTGC 543 ||||||||| || | || |||| ||||||||||||||||||||||| || |||||||| Sbjct 409 GAGGGAGGTG-AGATCTCAATGTTGGAGATGTTTGGTACATTTGCTCTCTCTGTTGGTGC 467 Query 544 TGCCGTTGGGATGGAGTTTTGGGCAAGATGGGCTCATAGAGCTCTTTGGCATGATTCTTT 603 ||| ||||| ||||| ||||||||||||||||||||||||||||| ||||| | |||| | Sbjct 468 TGCGGTTGGTATGGAATTTTGGGCAAGATGGGCTCATAGAGCTCTCTGGCACGCTTCTCT 527 Query 604 ATGGAACATGCATGAGTCACATCACAAACCAAGAGAAGGAGCGTTTGAGTTAAACGATGT 663 |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 528 ATGGAATATGCATGAGTCACATCACAAACCAAGAGAAGGACCGTTTGAGTTAAACGATGT 587 Query 664 GTTTGCTATAACAAACGCGGTTCCTGCGATTGGTCTACTCTATTATGGATTCTTGAATAA 723 ||||||||| ||||| ||||| ||||||||||| |||| |||||||||||| ||||| Sbjct 588 TTTTGCTATAGTGAACGCTGTTCCAGCGATTGGTCTCCTCTCTTATGGATTCTTCAATAA 647 Query 724 AGGACTTGTTCCTGGTCTCTGCTTCGGTGCCGGACTGGGAATAACGATGTTTGGAATGGC 783 |||||| ||||||||||||||||| || ||||| | ||||||||| |||||||||| || Sbjct 648 AGGACTCGTTCCTGGTCTCTGCTTTGGCGCCGGGTTAGGAATAACGGTGTTTGGAATCGC 707 Query 784 TTACATGTTCGTTCACGATGGACTTGTGCACAAGAGATTCCCTGTAGGTCCCATTGCCAA 843 |||||||| || |||||||| || ||||||||| | ||||||||||||||||| ||| | Sbjct 708 CTACATGTTTGTCCACGATGGTCTGGTGCACAAGCGTTTCCCTGTAGGTCCCATCGCCGA 767 Query 844 CGTTCCTTACCTTCGAAAGGTCGCCGCCGCTCACCAGCTACACCACACAGACAAATTCAA 903 ||| |||||||| || ||||||||||||||||||||| |||| ||||||||||||||||| Sbjct 768 CGTCCCTTACCTCCGGAAGGTCGCCGCCGCTCACCAGTTACATCACACAGACAAATTCAA 827 Query 904 AGGTGTACCATATGGGCTGTTTCTTGGACCAAAGGAAGTAGAAGAAGTGGGAGGAAAAGA 963 |||||||||||||| |||||||||||||| |||||| | |||||||| |||||||| || Sbjct 828 TGGTGTACCATATGGACTGTTTCTTGGACCCAAGGAATTGGAAGAAGTTGGAGGAAATGA 887 Query 964 AGAGTTGGAGAAAGAGATAAGCCGGAGAATCAAATTATACAACAAGG 1010 |||||| || || ||||| || ||||||||||||| ||||| |||| Sbjct 888 AGAGTTAGATAAGGAGATTAGTCGGAGAATCAAATCGTACAAAAAGG 934 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42697667040 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5