BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52882.1
Length=3063
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495353 jgi|Araly1|495353|fgenesh2_kg.8__1169__AT5G52882.1 4307 0.0
Ahg491983 jgi|Araly1|491983|fgenesh2_kg.7__1416__AT4G28000.1 1016 0.0
Ahg474944 jgi|Araly1|474944|fgenesh2_kg.2__74__AT1G64110.1 571 9e-162
> Ahg495353 jgi|Araly1|495353|fgenesh2_kg.8__1169__AT5G52882.1
Length=2948
Score = 4307 bits (2332), Expect = 0.0
Identities = 2551/2656 (96%), Gaps = 17/2656 (1%)
Strand=Plus/Plus
Query 157 AAAAGATATTTCGAGACAAC-AAAAGAGTCTCGATTTTTTCTTCTTTTACGAGGAATGCT 215
|||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||
Sbjct 92 AAAAGATATTTCGAGACAACAAAAAAAGTCTCGATTTTTTCTTCTTTTCCGAGGAATGCT 151
Query 216 CGTTGAAcccccccTAGATCTTCTGATTTAGAATCGAGGGTTTTCGTCTGATTC-TCGAA 274
||||||||||| |||||||| | |||||||||||||||||||||| |||||||| | ||
Sbjct 152 CGTTGAACCCCTCCTAGATCGTATGATTTAGAATCGAGGGTTTTCTTCTGATTCGT-TAA 210
Query 275 GTCTTTTCT-TTATTGGT-AAGAAAATGGAGCAGAAGAGCGTGTTGTTGTCAGCTTTAGG 332
|||||| | || ||||| || |||||||||||||||||||||||||| |||||||||||
Sbjct 211 ATCTTTTGTCTT-TTGGTGAA-AAAATGGAGCAGAAGAGCGTGTTGTTATCAGCTTTAGG 268
Query 333 TGTTGGTGTTGGGTTAGGGATTGGGTTAGCATCAGGTCAAAGTTTGGGAAGATGGGCAAA 392
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 269 AGTTGGTGTTGGGTTAGGGATTGGTTTAGCATCAGGTCAAAGTTTGGGAAGATGGGCAAA 328
Query 393 CGGGTCAGGTTCTGTTGAAGATGGACTCACCGGAGAACAGATTGAGCAAGAGTTGATTAG 452
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 329 CGGGTCGGGTTCTGTTGAAGATGGACTCACCGGAGAACAGATTGAGCAAGAGTTGATGAG 388
Query 453 ACAAATTGTTGATGGTAGAGAAAGTACTGTCACTTTTGAAGAGTTTCCGTATTTCTTAAG 512
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 389 ACAAATTGTTGATGGTAGAGAGAGTACTGTCACTTTTGATGAGTTTCCGTATTTCTTAAG 448
Query 513 CAAGAGAACTCGAGAATTGTTGACAAGTGTTGCATATGTTCATTTAAAAGAGTATGATAT 572
||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||
Sbjct 449 CAAGAGAACTCGAGAATTGTTGACAAGTGCTGCTTATGTTCATCTAAAAGAGTATGATAT 508
Query 573 ATCGAAGCACACTCGGAATCTTGCACCTGCAAGTAAAGCCATTCTACTTTCTGGTCCTGC 632
|||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||
Sbjct 509 ATCGAAGCACACTCGGAATCTTGCACCTGCGAGTAAAGCTATTCTTCTTTCTGGTCCTGC 568
Query 633 GGAATTTTATCAGCAAATGCTTGCAAAAGCTTTGTCTCATTACTTTGAATCAAAGCTATT 692
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 569 GGAGTTTTATCAGCAAATGCTTGCAAAAGCTTTGTCTCATTACTTTGAATCAAAGCTATT 628
Query 693 GTTGTTAGATATAACTGACTTCTCTATTAAGATACAGAGTAAATATGGATGCACCAAGAG 752
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 629 GTTGTTAGATATAACTGATTTCTCTATTAAGATACAGAGTAAATATGGATGCACCAAGAG 688
Query 753 AGAACCTTTTCACAAGAGGTCTATTTCTGAGTTAACATTAGATAAAGTGTCGAGTTTGAT 812
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 689 AGAACCTTTTCACAAGAGGTCTATTTCTGAGTTAACATTAGACAAAATGTCGAGTTTGAT 748
Query 813 GGGTTCCTTCTCTATGCTCTCTCAACGCGAAGTTGAACCAAGAGGGACATTGCGTCGACA 872
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 749 GGGTTCCTTCTCTATGCTTTCTCAACGTGAAGTTGAACCAAGAGGGACATTGCGTCGACA 808
Query 873 CACCAGTGGAAATGATCTTAAATCAAGGAGTACTGAGAGCTCTAATCGTCTTCCAAGACA 932
|||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||
Sbjct 809 CACCAGTGGAAATGATCTCAAATCAAGGAGTATTGAGAGCTCTAATCGTCCTCCAAGACA 868
Query 933 CAAGAGAAATGCTTCTGCTGCTTCTGATATCAGTAGCATATCTTCCCGCTCTTCGAGTTC 992
|||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 869 CAAGAGAAATGCTTCTGCTGCTTCTGATATCAGTAGTATGTCTTCCCGCTCTTCAAGTTC 928
Query 993 TGTTTCAGCTTCCAGAAAACGCACTACAAATCTATGTTTCGACGAGAAACTTTTCCTGCA 1052
||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 929 TGTTTCAGCTTCCAGCAGACGCAGTACAAATCTATGTTTCGACGAGAAACTTTTCCTGCA 988
Query 1053 ATCACTTTACAAGGTCTTGAGT-TCTGTATCGGAAACAACTCCGCTAATCATATACTTGA 1111
|||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||
Sbjct 989 GTCACTTTACAAGGTCTTG-GTGTCTGTATCGGAAACAACTCCGCTAATAATATACTTGA 1047
Query 1112 GAGATGTTGAGAAGCTTCTTGAGTCAGAAAGATTCTACAAGTTGTTCCAAAGGCTCTTGA 1171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1048 GAGATGTTGAGAAGCTTCTTGAGTCAGAAAGATTCTACAAGTTGTTCCAAAGGCTCTTGA 1107
Query 1172 ACAAGCTCTCTGGTCCTGTCTTAATTCTTGGCTCAAGAGTATTAGAACCTGAAGATGATT 1231
|||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct 1108 ACAAGCTCTCTGGTCCGGTCTTGATTCTTGGCTCAAGAGTATTAGAACCCGAAGAAGATT 1167
Query 1232 GCCAAGAAGTAGACGAAAGTATTTCCGCTCTATTTCCTTACAACATCGAGATCAGACCAC 1291
|||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1168 GCCAAGAAGTAGGCGAAGGGATTTCCGCTCTATTTCCTTACAACATCGAGATCAGACCAC 1227
Query 1292 CAGAAGATGAATCTCAGCTCGTGAGCTGGAAATCTCGGTTAGAAGACGACATGAAAATGA 1351
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1228 CAGAGGATGAATCTCAGCTCGTGAGCTGGAAATCTCGGTTAGAAGATGACATGAAAATGA 1287
Query 1352 TTCAGTTTCAAGACAACAAGAACCACATTGCAGAGGTTCTTGCTGCTAATGATATCCAAT 1411
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1288 TTCAATTTCAAGACAACAAGAACCACATTGCAGAGGTTCTTGCTGCTAATGATATCCAGT 1347
Query 1412 GCGATGACTT-GTCTTCGATATGCCACGCAGATACAATGTGTTTGAGTAACCATATTGAG 1470
|||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1348 GCGATGACTTAG-CTTCGATATGCCACGCAGATACAATGTGTTTGAGTAACCACATTGAG 1406
Query 1471 GAAATTGTGGTTTCTGCAATCACTTATCATTTGATACACACCAAAGAACCAGAATACAGA 1530
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1407 GAAATTGTGGTTTCTGCAATCACTTATCATTTGATACACACCAAAGAACCGGAATACAGA 1466
Query 1531 AACGGAAAGCTTGTAATATCTTCCAAAAGTTTGTCTCATGGACTAAGTATATTCCAAGAA 1590
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1467 AACGGAAAGCTTGTAATATCTTCCAAAAGTTTGTCTCATGGACTTGGTATATTCCAAGAA 1526
Query 1591 GGTGGAAACAGATCATTTGAAGACTCGTTGAAGCTAGATACAAACACTGACTCTAAGCGA 1650
||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1527 GGTGGAAACAGATCATTCGAAGACTCCTTGAAGCTAGACACAAACACTGACTCTAAGCGA 1586
Query 1651 AAAGGAGGAGAAGTATGTTCAAAGAGTGAGTCAAAATCTGGTCCTGAAAACAAAAACGAG 1710
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1587 AAAGAAGGAGAAGTATGTTCAAAGAGTGAGTCGAAATCTGGTCCTGAAAACAAAAACGAG 1646
Query 1711 TCAGAAATATCACTTCCTTCAAACAAGAATGACAATCCATTACCTCCAAAAGCACCTGAG 1770
||||||||||| || ||||||||||| || |||||||| || ||||||||||||||||||
Sbjct 1647 TCAGAAATATCGCTCCCTTCAAACAAAAACGACAATCCTTTGCCTCCAAAAGCACCTGAG 1706
Query 1771 GTTGTTCCTGATAATGAGTTTGAGAAGCGTATAAGACCAGAAGTTATACCAGCAAATGAG 1830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1707 GTTGTTCCTGATAATGAGTTTGAGAAGCGTATAAGACCAGAAGTTATACCAGCAAATGAG 1766
Query 1831 ATTGGTGTGACATTTGCAGATATTGGTTCTCTAGACGAAACAAAAGATTCGCTTCAAGAA 1890
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1767 ATTGGTGTGACATTTGCAGATATTGGTTCTCTAGACGAAACAAAAGATTCACTTCAAGAA 1826
Query 1891 CTTGTAATGCTTCCACTTAGAAGACCGGATCTTTTTCAAGGCGGTCTTCTCAAGCCATGT 1950
||||| |||||||||||| ||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1827 CTTGTTATGCTTCCACTTCGAAGACCGGATCTCTTTCAAGGCGGTCTTCTCAAACCATGT 1886
Query 1951 AGAGGAATCCTATTATTCGGTCCACCTGGTACTGGCAAAACAATGCTTGCAAAAGCAATT 2010
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1887 AGAGGAATCCTATTATTCGGTCCACCTGGTACTGGCAAAACAATGCTTGCAAAAGCAATC 1946
Query 2011 GCAAATGAAGCTGGAGCTAGTTTCATCAATGTCTCCATGTCTACAATCACTTCAAAATGG 2070
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1947 GCAAATGAAGCTGGAGCTAGTTTCATCAATGTCTCCATGTCTACAATCACTTCGAAATGG 2006
Query 2071 TTTGGAGAAGACGA-AAAGAATGTGAGAGCTCTGTTTACTTTAGCAGCTAAAGTATCTCC 2129
|||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 2007 TTTGGAGAAGACGAGAAA-AACGTGAGAGCTCTGTTTACTTTAGCAGCTAAAGTATCTCC 2065
Query 2130 AACGATTATATTTGTGGATGAAGTTGATAGTATGTTGGGACAAAGGACAAGAGTTGGAGA 2189
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2066 AACGATTATATTCGTGGATGAAGTTGATAGTATGTTGGGACAAAGGACAAGAGTTGGAGA 2125
Query 2190 GCATGAAGCTATGAGGAAGATTAAGAATGAGTTTATGACACATTGGGATGGGCTAATGAC 2249
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 2126 ACATGAAGCTATGAGGAAAATTAAGAATGAGTTTATGACGCATTGGGATGGGCTAATGAC 2185
Query 2250 GAAACCCGGTGAAAGGATTCTCGTTCTTGCAGCGACAAACAGACCGTTTGATCTTGATGA 2309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2186 GAAACCCGGTGAAAGGATTCTCGTTCTTGCAGCGACAAACAGACCGTTTGATCTTGATGA 2245
Query 2310 AGCTATCATTAGGAGGTTTGAGAGAAGAATAATGGTGGGACTTCCTTCGATTGAGAGCAG 2369
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2246 AGCTATCATTAGGAGGTTTGAGCGAAGAATAATGGTGGGACTTCCTTCGATTGAGAGCAG 2305
Query 2370 AGAGAAGATCTTGAGAACTTTGTTGTCGAAAGAGAAAACAGAGAATCTTGATTTCCATGA 2429
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2306 AGAGAAGATCTTGAGAACTTTGTTGTTGAAAGAGAAAACAGAGAATCTTGATTTCCATGA 2365
Query 2430 GCTTGGGCAGATAACAGAAGGCTACAGTGGAAGTGATCTCAAGAACTTATGCATCACAGC 2489
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2366 GCTTGGACAGATGACAGAAGGCTACAGTGGAAGTGATCTCAAGAACTTATGCATCACAGC 2425
Query 2490 TGCTTATAGACCAGTTagagagctgattcagcaggaaagattgaaagatcaggagaggaa 2549
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2426 TGCGTATAGACCGGTTAGAGAGCTGATTCAGCAGGAAAGATTGAAAGATCAGGAGAGGAA 2485
Query 2550 gaagagagaagaagcaggaaaaggcacagaagaatcaaaagaa---gaagaagcagaagc 2606
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 2486 GAAGAGAGAAGAAGCAGGAAAAGGCACAGAAGAACCAAAAGAAAAAGAAGAAGCAGAAGC 2545
Query 2607 ttctgaggaaagaGTTATTACATTGAGACCTTTGAACATGGAAGACATGAGAAAAGCTAA 2666
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2546 TTCTGAGGAGAGAGTTATTACATTGAGACCTTTGAACATGGAAGACATGAGAAAAGCTAA 2605
Query 2667 AACCCAGGTAGCTGCGAGTTTTGCATCAGAAGGAGCAGGAATGAATGAGCTAAAGCAATG 2726
|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2606 AAACCAGGTAGCTGCGAGTTTTGCATCAGAAGGAGCAGGAATGAATGAGCTGAAGCAATG 2665
Query 2727 GAATGATTTGTATGGAGAAGGAGGCTCAAGGAAAAAGGAACAGCTCACTTACTTCCTTTG 2786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2666 GAATGATTTGTATGGAGAAGGAGGCTCAAGGAAAAAGGAACAGCTCACTTACTTCCTCTG 2725
Query 2787 AAAATTGCAAACAGAT 2802
||||||||||| ||||
Sbjct 2726 AAAATTGCAAA-AGAT 2740
Score = 291 bits (157), Expect = 3e-77
Identities = 203/223 (91%), Gaps = 12/223 (5%)
Strand=Plus/Plus
Query 2842 CAAAGAGATCCCGCATATCACAAAGAAAGAGTCTTCAATTACTTG-TTAGGCCATTCCAt 2900
|||| |||||| |||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 2733 CAAA-AGATCCGGCATATCACAAAGAAAGAGTCTACAATTACTTGTTTAGGCCATTCCAT 2791
Query 2901 ttttagataa-ctttttaggtttcatcttattctctttcttttt-gtgttttatagaatt 2958
|||||||||| ||| ||||||| ||| ||||||||||||||||| | |||||||||||||
Sbjct 2792 TTTTAGATAAACTTCTTAGGTT-CATTTTATTCTCTTTCTTTTTTGGGTTTTATAGAATT 2850
Query 2959 ttc-tACAAAACTATGAtttttttttATATGTTCATATTTATGTCATTGTGAATGTGT-A 3016
||| | ||||||| ||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 2851 TTCCT-CAAAACTGTGATTTTTT---ATATGTTCATATTTATGTCATTGTGAATGTGTTA 2906
Query 3017 GTTAATGTAGTAAAGATATTTTATAAAAATATTATGATTGTTT 3059
|||||||||||||| |||||| ||| |||||||||||||||||
Sbjct 2907 GTTAATGTAGTAAACATATTT-ATATAAATATTATGATTGTTT 2948
Score = 73.1 bits (39), Expect = 1e-11
Identities = 47/50 (94%), Gaps = 3/50 (6%)
Strand=Plus/Plus
Query 73 CCATCTTCTTCTTCTCCATCGTCCACCTT-TAAAATCTTATTTTTACCCC 121
||||||||||||||||||||||||||||| |||| |||| ||||||||||
Sbjct 30 CCATCTTCTTCTTCTCCATCGTCCACCTTATAAA-TCTT-TTTTTACCCC 77
Score = 58.4 bits (31), Expect = 3e-07
Identities = 36/38 (95%), Gaps = 2/38 (5%)
Strand=Plus/Plus
Query 17 AACCCAAACGTCGCTATAAATAGAGAGAGATCCATCTT 54
|||||||||||||||||||||||||||| ||||||||
Sbjct 1 AACCCAAACGTCGCTATAAATAGAGAGA--TCCATCTT 36
> Ahg491983 jgi|Araly1|491983|fgenesh2_kg.7__1416__AT4G28000.1
Length=2181
Score = 1016 bits (550), Expect = 0.0
Identities = 872/1028 (85%), Gaps = 20/1028 (2%)
Strand=Plus/Plus
Query 1768 GAGGTTGTTCCTGATAATGAGTTTGAGAAGCGTATAAGACCAGAAGTTATACCAGCAAAT 1827
||||| | |||||||||||| || |||||||| ||||||||||| ||||| |||||||||
Sbjct 1162 GAGGTGGCTCCTGATAATGAATTCGAGAAGCGCATAAGACCAGAGGTTATCCCAGCAAAT 1221
Query 1828 GAGATTGGTGTGACATTTGCAGATATTGGTTCTCTAGACGAAACAAAAGATTCGCTTCAA 1887
|||||||||||||| ||||| ||||| ||||| || || ||||| ||||| |||||||||
Sbjct 1222 GAGATTGGTGTGACTTTTGCTGATATAGGTTCACTGGATGAAACCAAAGAATCGCTTCAA 1281
Query 1888 GAACTTGTAATGCTTCCACTTA-GAAGACCGGATCTTTTTC-AAGGCGGTCTTCTCAAGC 1945
|| ||||| |||||||| | || | || || || | | ||| |||| || ||||| ||||
Sbjct 1282 GAGCTTGTCATGCTTCCTC-TACGTAGGCCTGA-CCTGTTCAAAGGTGGCCTTCTAAAGC 1339
Query 1946 CATGTAGAGGAATCCTATTATTCGGTCCACCTGGTACTGGCAAAACAATGCTTGCAAAAG 2005
| || ||||||||||| | || || |||||||||||||| ||||| ||| | |||||||
Sbjct 1340 CCTGCAGAGGAATCCTCCTCTTTGGACCACCTGGTACTGGGAAAACTATGATGGCAAAAG 1399
Query 2006 CAATTGCAAATGAAGCTGGAGCTAGTTTCATCAATGTCTCCATGTCTACAATCACTTCAA 2065
| ||||| || ||||||||||||||||| || || || || ||||| |||||||||||||
Sbjct 1400 CCATTGCGAACGAAGCTGGAGCTAGTTTTATAAACGTGTCAATGTCCACAATCACTTCAA 1459
Query 2066 AATGGTTTGGAGAAGACGAAAAGAATGTGAGAGCTCTGTTTA-CTTTAGCAGCTAAAGTA 2124
||||||||||||||||||| ||||| ||||||||| |||| | | || || || |||||
Sbjct 1460 AATGGTTTGGAGAAGACGAGAAGAACGTGAGAGCTTTGTTCACCCTT-GCGGCCAAAGTG 1518
Query 2125 TCTCCAACGATTATATTTGTGGATGAAGTTGATAGTATGTTGGGACAAAGGACAAGAGTT 2184
||||| || |||||||||||||||||||| ||||| ||| ||||||| |||||||||||
Sbjct 1519 TCTCCGACTATTATATTTGTGGATGAAGTGGATAGCATGCTGGGACAGAGGACAAGAGTC 1578
Query 2185 GGAGAGCATGAAGCTATGAGGAAGATTAAGAATGAGTTTATGACACATTGGGATGGGCTA 2244
|||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct 1579 GGAGAGCATGAAGCTATGAGGAAGATCAAAAATGAGTTCATGACACATTGGGATGGGCTT 1638
Query 2245 ATGACGAAACCCGGTGAAAGGATTCTCGTTCTTGCAGCGACAAACAGACCGTTTGATCTT 2304
||| |||| | ||||| | ||||||||||||||||| |||||||| || ||||||||
Sbjct 1639 ATGTCGAATGCTGGTGACCGTATTCTCGTTCTTGCAGCAACAAACAGGCCTTTTGATCTC 1698
Query 2305 GATGAAGCTATCATTAGGAGGTTTGAGAGAAGAATAATGGTGGGACTTCCTTCGATTGAG 2364
|||||||| ||||| |||||||||||||||||||| |||||||| ||||| ||| | |||
Sbjct 1699 GATGAAGCCATCATCAGGAGGTTTGAGAGAAGAATCATGGTGGGTCTTCCATCGGTCGAG 1758
Query 2365 AGCAGAGAGAAGATCTTGAGAACTTTGTTGTCGAAAGAGAAAACAGAGAATCTTGATTTC 2424
||||||||||||||||| ||||| || ||||| |||||||||||||||||||||||||||
Sbjct 1759 AGCAGAGAGAAGATCTTAAGAACCTTATTGTCAAAAGAGAAAACAGAGAATCTTGATTTC 1818
Query 2425 CATGAGCTTGGGCAGATAACAGAAGGCTACAGTGGAAGTGATCTCAAGAACTTATGCATC 2484
|||||||||| |||||| ||||| || || ||||||||||||||||||||||| |||| |
Sbjct 1819 CATGAGCTTGCGCAGATGACAGATGGTTATAGTGGAAGTGATCTCAAGAACTTTTGCA-C 1877
Query 2485 A-CAGCTGCTTATAGACCAGTTagagagctgattcagcaggaaagattgaaagatcagga 2543
| |||| || ||| ||||||| || |||||||| |||| || | |||||||| |||||
Sbjct 1878 AACAGCAGCATATCGACCAGTGAGGGAGCTGATAAAGCAAGAGTGCTTGAAAGACCAGGA 1937
Query 2544 gaggaagaagagagaagaagcag-gaaaaggcacagaaga---atca-aaagaagaagaa 2598
||||||||||| ||| |||||| ||| || | ||||| ||| ||| || |||||
Sbjct 1938 GAGGAAGAAGAAAGAGGAAGCAAAGAAGAGT-AGTGAAGAGGGATCTGAAACAA-AAGAA 1995
Query 2599 gcagaagcttctgaggaaagaGTTATTACATTGAGACCTTTGAACATGGAAGACATGAGA 2658
| || | | ||| ||| |||| || || ||||||||||||| |||||||||||||| |
Sbjct 1996 GAAGTA-C--CTGCGGAGAGAGACATAACGTTGAGACCTTTGAGCATGGAAGACATGA-A 2051
Query 2659 AA-AGCTAAAACCCAGGTAGCTGCGAGTTTTGCATCAGAAGGAGCAGGAATGAATGAGCT 2717
| |||||||| |||||| ||||| ||||||||| ||||||||||||||||||| || ||
Sbjct 2052 AGTAGCTAAAAGCCAGGTTGCTGCTAGTTTTGCAGCAGAAGGAGCAGGAATGAACGAACT 2111
Query 2718 AAAGCAATGGAATGATTTGTATGGAGAAGGAGGCTCAAGGAAAAAGGAACAGCTCACTTA 2777
||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct 2112 CAAGCAGTGGAATGATTTGTATGGAGAAGGAGGCTCCAGGAAGAAGGAACAGCTTTCTTA 2171
Query 2778 CTTCCTTT 2785
||||||||
Sbjct 2172 CTTCCTTT 2179
> Ahg474944 jgi|Araly1|474944|fgenesh2_kg.2__74__AT1G64110.1
Length=2845
Score = 571 bits (309), Expect = 9e-162
Identities = 817/1054 (78%), Gaps = 68/1054 (6%)
Strand=Plus/Plus
Query 1756 CCAAAAGCACCTGAGGTTGTTCCTGATAATGAGTTTGAGAAGCGTATAAGACCAGAAGTT 1815
|||||||| || || |||| || ||||| ||||||||||| || |||||||| |||||
Sbjct 1692 CCAAAAGCTCCGGAAGTTGCACCGGATAACGAGTTTGAGAAACGGATAAGACCGGAAGTA 1751
Query 1816 ATACCAGCA-AATGAGATTGGTGTGACATTTGCAGATATTGGTTCTCTAGACGAAACAAA 1874
|| |||||| || || ||| || ||||| ||| |||||| | || ||||| | |||
Sbjct 1752 ATCCCAGCAGAA-GAAATTAACGTCACATTCAAAGACATTGGTGCACTTGACGACATAAA 1810
Query 1875 AGATTCGCTTCAAGAACTTGTAATGCTTCCACTTAGAAGACCGGATCTTTTTCA-AGGCG 1933
||| || |||||||| |||||||||||||| || | ||||| || | | |||| ||| |
Sbjct 1811 AGAGTCACTTCAAGAGCTTGTAATGCTTCCTCTCCGTAGACCAGA-CCTATTCACAGGAG 1869
Query 1934 GTCTTC-TCAAGCCATGTAGAGGAATCCTATTATTCGGTCCACCTGGTACTGGCAAAACA 1992
||| || | ||||| || || ||||||||| | ||||||||||| ||||| || ||||||
Sbjct 1870 GTC-TCTTGAAGCCCTGCAGGGGAATCCTACTCTTCGGTCCACCGGGTACAGGTAAAACA 1928
Query 1993 ATGCTTGCAAAAGCAATTG-CAAATGAAGCTGGAGCTAGTTTCATCAATGTCTCCATGTC 2051
||||| || ||||| |||| |||| || || ||||| ||||| || || || ||||||||
Sbjct 1929 ATGCTAGCTAAAGCCATTGCCAAA-GAGGCAGGAGCGAGTTTTATAAACGTTTCCATGTC 1987
Query 2052 TACAATCACTTCAAAATGGTTTGGAGAAGACGAAAAGAATGTGAGAG-CTCTGTTTACTT 2110
||||| ||||| |||||||||||||||||||| |||||||| || | || ||||||||
Sbjct 1988 GACAATAACTTCGAAATGGTTTGGAGAAGACGAGAAGAATGTTAGGGCCT-TGTTTACTC 2046
Query 2111 TAGCAGCTAAAGTATCTCCAACGATTATATTTGTGGATGAAGTTGATAGTATGTTGGGAC 2170
|||| | || || || ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2047 TAGCTTCGAAGGTGTCGCCAACCATTATATTTGTGGATGAAGTTGATAGTATGTTGGGAC 2106
Query 2171 AAAGGACAAGAGTTGGAGAGCATGAAGCTATGAGGAAGATTAAGAATGAGTTTATGACAC 2230
| || |||||||| ||||| |||||||||||||| ||||| |||||||||||||||| |
Sbjct 2107 AGAGAACAAGAGTAGGAGAACATGAAGCTATGAGAAAGATAAAGAATGAGTTTATGAGTC 2166
Query 2231 ATTGGGATGGGCTAATGACGAAACCCGGTGAAAGGATTCTC-GTTCTTGCAGCGACAAA- 2288
||||||||||| ||||||| ||||| ||||| | || || || ||||| || || ||
Sbjct 2167 ATTGGGATGGGTTAATGACTAAACCTGGTGAGCGTAT-CTTAGTCCTTGCTGCTACGAAT 2225
Query 2289 CAGACCGTTT-GATCTTGATGAAGCTATCATTAGGA-GGTTTGAGA-GAAGAATAATGGT 2345
| | || ||| ||||| || || || || || || | |||| || | |||| || |||||
Sbjct 2226 CGG-CC-TTTCGATCTAGACGAGGCCATTATCAG-ACGGTTCGA-ACGAAGGATCATGGT 2281
Query 2346 GGGACTTCCTTC-GATTGAGAGCAGAGAGAAGAT-CTTGAGAACTTTGTT-GTCGAAAGA 2402
|||||| || | | | |||| |||||| ||||| || || || ||||| | |||||||
Sbjct 2282 GGGACTACCGGCTG-TAGAGAACAGAGAAAAGATTCTA-AGGACATTGTTAG-CGAAAGA 2338
Query 2403 GAAAACAGA-GAAT-CTTG-ATTTCCATGAGCTTGGGCA--GATAACAGAAGGCTACAGT 2457
|||| ||| ||| |||| ||| | | || || | || ||| |||||||| ||||
Sbjct 2339 GAAAGTAGACGAAAACTTGGATTACAAGGAACTAG--CAATGATGACAGAAGGATACACA 2396
Query 2458 GGAAGTGATCTCAAGAA-CTTATGCATCA-CAGCTGCTTATAGACCAGTTagagagctga 2515
||||||||||||||||| || |||| || | ||||| ||||| || || ||||| || |
Sbjct 2397 GGAAGTGATCTCAAGAATCTG-TGCA-CAACCGCTGCGTATAGGCCGGTGAGAGAACTTA 2454
Query 2516 ttcagcaggaaag-attgaaagatcaggagaggaagaagagagaaga-agcaggaaaagg 2573
| ||||| || || || ||||| || |||| ||||||| || ||| || || | |
Sbjct 2455 TACAGCAAGAGAGGATC-AAAGA-CAC-AGAG-AAGAAGA-AGCAGAGAG-AG-ACTA-- 2505
Query 2574 cacagaagaatcaaaagaagaagaagcagaagcttctgaggaaagaGTTATTACA-TTGA 2632
|| | ||| ||||||| |||| ||| || || |||||||| ||| ||
Sbjct 2506 CA-A-AAGCGGGTGAAGAAGATGAAGG-GAAA-----GAAGAGAGAGTTATAACACTTC- 2556
Query 2633 GACCTTTGAACATGG-AAGACATGAGAA-AAGCTAA-AACCCAGGTAGCTGCGAGTTTTG 2689
| || ||||||| | ||||| | | || |||| || |||| |||| || ||||||||||
Sbjct 2557 GTCCGTTGAACA-GACAAGACTTTA-AAGAAGCCAAGAACC-AGGTGGCGGCGAGTTTTG 2613
Query 2690 CATCAGAAGGAGCAGGAATGA-ATGAGCTAAAGCAATGGAATGATTTGTATGGAGAAGGA 2748
|| | || ||||| |||||| | ||| | ||||| |||||||| |||||||||||||||
Sbjct 2614 CAGCGGAGGGAGCGGGAATGGGA-GAGTTGAAGCAGTGGAATGAGTTGTATGGAGAAGGA 2672
Query 2749 GGCTCAAGGAA-AAAGGAACAGCTCACTTACTTC 2781
|| || ||||| |||| |||| ||||||||||||
Sbjct 2673 GGATCGAGGAAGAAAG-AACAACTCACTTACTTC 2705
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115680074065
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5