BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G52900.1
Length=1275
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495355 jgi|Araly1|495355|fgenesh2_kg.8__1171__AT5G52900.1 1879 0.0
> Ahg495355 jgi|Araly1|495355|fgenesh2_kg.8__1171__AT5G52900.1
Length=1269
Score = 1879 bits (1017), Expect = 0.0
Identities = 1206/1291 (93%), Gaps = 38/1291 (3%)
Strand=Plus/Plus
Query 1 CTGAAACATATGTTCCCAATTCAAAAAATTGTTTTGTCTCAAACAAATTTCTCTGCACAC 60
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 1 CTGAAACATATGTTCCCAATTC-AAACATTGTTTTGTCTCAAACAAATTTCTCTGCACAC 59
Query 61 ACTCAACAACATATCCCATAACaaaa--aaaagctattaaa-aaaaaaGAGAAGCAGCCA 117
|||||||||||||||||| ||||||| |||||| | ||| |||||||| || ||||||
Sbjct 60 ACTCAACAACATATCCCAAAACAAAACCAAAAGCCA--AAAGAAAAAAGA-AATCAGCCA 116
Query 118 TGGAAGAAGGTAAGCAAGAAGCTTCAATGCCACTAGTTCCAATTGACAGCTTCTCTTACA 177
||||||||| ||| |||||||||||||||||||||||||| || |||||||||||||| |
Sbjct 117 TGGAAGAAGATAAACAAGAAGCTTCAATGCCACTAGTTCCCATAGACAGCTTCTCTTATA 176
Query 178 GTTGGTTAGTTAACTTTCCTTCTTTAGAAGCTACCATTGATGATCATCATCAAACATACG 237
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||
Sbjct 177 GTTGGTTAGTTAACTTTCCTTCTTTAGAAGCTTCCAGTGATGATCATCATCAAACCTACG 236
Query 238 AAGATTCATCTTCTTCTTCTTCCTTCATTGAGATGGATCCAAGATTGCCTCCTTCTAGAA 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 AAGATTCATCTTCTTCTTCTTCCTTCATTGAGATGGATCCAAGATTGCCTCCTTCTAGAA 296
Query 298 GATTCTTCATCAAAACATCTCATGAAAGTAGCTTCAAGTTCGATAACTTCGTCTCTTTCT 357
||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||
Sbjct 297 GATTCTTCATCAAAACATCCCATGAAACTAGCTTCAAGTTCGATAACTTCGTTTCTTTCT 356
Query 358 CCGACGAAGATCACTCTTTAGTTCACGCCGACGAGCTCTTCCGTGACGGCTACGTTATGC 417
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 357 CCGACGAAGATCACTCTTTAGTTCACGCCGACGAGCTCTTCCGTGATGGCTACGTCATGC 416
Query 418 CTTATCGATT-AAAGCCCACGTCCGCGGCTACCGAGGAAGAATCTGAGCCGTTGGATACA 476
| || ||||| |||| ||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 417 CATACCGATTAAAAG-CCACGTCAGCGGCTACCGAGGAAGAATCTGAGCCGTTGGACACA 475
Query 477 ACAACATCG--GAG-AAGATTGATACACGTGGCCTTAACAGCAAGCCTTCTCCTACTTCT 533
|||||| || | | ||||||| | ||| |||| |||||| ||||||||||||||
Sbjct 476 ACAACAACGACGGGTAAGATTG----A--TGGAGTTAAGAGCAAGTCTTCTCCTACTTCT 529
Query 534 TCAAGAAAGCTGAGGAGAGTGTCCAAATGGGTTTTGCTGAAGTATCTTGATTTCTTGACG 593
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 530 TCAAGAAAGCTAAGGAGAGTGTCCAAATGGGTTTTGTTGAAGTATCTTGATTTCTTGACG 589
Query 594 CCATTGTGTAAGAGATTAAGGAGATGTAGATCCGCTGTAACAACGGGAAGTATCGGTATG 653
|||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 590 CCATTGTGTAAGAGGTTAAGGAGATGTAGATCCGCTGGAACAACGAGAAGTATCGGTATG 649
Query 654 GATTCGAGGATCCGTGTAACGACTTCGTGTAGGAGCAGAGTTTATTCTGATGAAATGACG 713
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 650 GATTCGAGGATCCGTGTAACGACGTCGTGTAGGAGCAGAGTTTATTCTGATGAAATTACT 709
Query 714 TCGTCGCCAAGAATAAGTGTTGCTGATGATTATTATTGGAGAAGGTCTTGTGACTCTGAG 773
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 710 TCGTCGCCAAGAATAAGTGTTGCTGATGATTATTATTGGAGAAGGTCTTGTGACTCCGAG 769
Query 774 AGCTCTATATACGAAGCCGTTCTTCATTGCAAGAAATCATTC-G-A-GAAATAAGAAGAA 830
|||||||| |||||||||||||||||||||||| |||||||| | | | || |||| ||
Sbjct 770 AGCTCTATTTACGAAGCCGTTCTTCATTGCAAGCAATCATTCGGTACGTTAT-AGAACAA 828
Query 831 TAATCCATGGAAGAGGAGCAGTT--AGAAGTAGAGATGGAGAATA-TTAAGCTTGAGAGA 887
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 829 -AATCCATGGAAGAGGAGCAGTTAGAGAAGTAGAGATGGAGAATATTTAAGCTTGAGAGA 887
Query 888 ATAAGCAAATTGCATTAACACGTTACACATGGAGTGGGAGAGAAAGAGAGGGAGCAACTT 947
|||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 888 ATAAGCAAATTGCATTAACACGTTACACATGGAGTGGGAGAG--AGAGAGAGAGCAACTT 945
Query 948 GTGATGTGTCTTTTTGTTGATTCTCTCTCTTGAATTAAAGAGATTGATGTGAATGATCCA 1007
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 946 GTGATGTGTCTTTTTGTTGTTTCTCTCTCTTGAATTAAAGAGATTGATGTGAATGATCCA 1005
Query 1008 TGTGAATGTGTCATCTGATGTGGATCAAGAATGtttttgtttttttACATGAGTGGGCAC 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1006 TGTGAATGTGTCATCTGATGTGGATCAAGAATGTTTTTGTTTTTTTACATGAGTGGGCAC 1065
Query 1068 ATTTATAGAAATATATATGGGGCTGCAAGCAGAATCAAGAAAATATTTTCAGATTTTCTT 1127
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1066 ATTTATAGAAATATATATGGGGCTGCAAGCAGAACCAAGAAAATATTTTCAGATTTTCTT 1125
Query 1128 GGCTAtttttttttCTCCATATGTGTATATTCCAATCATGTAAGTTAAATAGTTTCTTTT 1187
||||||||||| |||||||| |||||| ||||||||||||||||||||||||||
Sbjct 1126 GGCTATTTTTT---CTCCATAT----ATATTCGGATCATGTAAGTTAAATAGTTTCTTTT 1178
Query 1188 TATATATGGGGTAAAAACTATAAGTGCCTACCCATGTTTACTTTTAA-T-TT-CTGGTCC 1244
||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||
Sbjct 1179 TATATATGGGGTAAAAACTATAAGTGCCTACCCATGTTTACTTTTAAATATTTCTGGTCC 1238
Query 1245 AATTGTGTTTGAATATTCTTACTTTTTGTGC 1275
|||||||||||||||||||| ||||||||||
Sbjct 1239 AATTGTGTTTGAATATTCTTTCTTTTTGTGC 1269
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47653646250
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5