BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53020.1
Length=2329
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495366 jgi|Araly1|495366|fgenesh2_kg.8__1182__AT5G53020.1 3441 0.0
> Ahg495366 jgi|Araly1|495366|fgenesh2_kg.8__1182__AT5G53020.1
Length=2245
Score = 3441 bits (1863), Expect = 0.0
Identities = 2100/2214 (95%), Gaps = 17/2214 (1%)
Strand=Plus/Plus
Query 1 ATGTCCATAAGAGATGAGAAACAGTGTGAGATGAGAAACGAAATGATGCTATTTGGTTTA 60
|||||||| | ||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 1 ATGTCCATGGGTGATGAGAAACAGTGTGAGATGAGGAACGAAATGATGTTATTTGGTTTG 60
Query 61 CTGATTAGGAGAATCTTTGATGAGGAGAGTGGTAAGCTTCTTCAGAGGCTTGAGGATGCC 120
|||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 61 CTGATTAGGAGAGTCTTTGATGAGGAAAAAGGTAAGCTTCTTCAGAGGCTTGAGGATGCC 120
Query 121 AATTGTGAAATTACAGAGTTGAAGAAAGTGAGAAATGATGATGCAAAAGCTAACGAGAAG 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AATAGTGAAATTACAGAGTTGAAGAAAGTGAGAAATGATGATGCAAAAGCTAACGAGAAG 180
Query 181 GTAGTTAGCATAATCGCGTCTCAGAAACAGAATTGGTTAAGGGAGAGGTATGGATTAAGG 240
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 GTGGTTAGCATAATCGCGTCTCAAAAACAGAATTGGTTAAGGGAGAGGTATGGATTAAGG 240
Query 241 CTGCAGATTGAAGCTCTGATGAAGGAACTAAGGAATATAGAGAAGAGGAAGAGACATAGC 300
|| |||||||| |||||||||||||||||||||||||| ||||||||||||||| | |||
Sbjct 241 CTACAGATTGAGGCTCTGATGAAGGAACTAAGGAATATTGAGAAGAGGAAGAGAAAAAGC 300
Query 301 TTACT-GGA-ATTGCAAGAAAGATTAAAGGAAAAGGAAGGTTTATTGGAATCTAAAGATA 358
||| | ||| | |||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 301 TTA-TCGGAGA-TGCAAGAAAGATTAAAAGAAAAGGAAGGTTTAGTGGAATCTAAAGATA 358
Query 359 AGGCAATAGAAGAAGAGAAGCGTAAATGCGAATTGTTAGAGGAAAGGCTAGTGAAAGCAG 418
||||||||||||| |||||||| ||||||||| ||| ||||||||||| || |||||||
Sbjct 359 AGGCAATAGAAGACGAGAAGCGGAAATGCGAAGAGTTGGAGGAAAGGCTGGTCAAAGCAG 418
Query 419 AAAAGGAAGTTCAAGATTTAAGGGAAACACAAGAGAGAGATGTGCAAGAACATTCTTCTG 478
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 AAAAAGAAGTTCAAGATTTAAGGGAAACACAAGAGAGAGATGTGCAAGAACATTCTTCTG 478
Query 479 AGCTGTGGAGGCAAAAGAAGACATTCCTTGAGCTTGCTTCTAGCCAGAGACAACTTGAAG 538
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 AGCTATGGAGGCAAAAGAAGACATTCCTTGAGCTTGCTTCTAGCCAGAGACAACTTGAAG 538
Query 539 CTGAACTGAGTCGTGCAAATAAGCAAATTGAGGCTAAAGGACATGAACTTGAAGACTTGT 598
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 539 CTGAACTGAGTCGTGCAAATAAGCAAATTGAGGCCAAAGGACATGAACTTGAAGACTTGT 598
Query 599 CATTAGAAATCAATAAGATGCGGAAAGATTTGGAACAGAAAGATCGAATCTTGGCTGTGA 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 CATTAGAAATCAATAAGATGCGGAAAGATTTGGAACAGAAAGATCGAATCTTGGCTGTGA 658
Query 659 TGATGAAAAAGTCAAAACTGGACATGACGGAGAAGCAGATGACATTGCTTAAGGAGGcaa 718
|||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
Sbjct 659 TGATGAAAAAGTCAAAACTGGACATGACCGAGAAGCAGATGGCATTGCTTAAGGAGGCTA 718
Query 719 agaaaaagcaagatgaagaagaagcaaagaaatggaaaatgaatccaaagtcaagaaaaC 778
|||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||
Sbjct 719 AGAAAAAGCAAGATGAAGAAGAAGCAAAGAAATGGACAACGAATCCAAAATCAAGAAAAC 778
Query 779 ACGAGAGACGGTCACTAAGAAGCATGTTTGCTTTTGAAGCCACAAGTAAGCCTAAAACCA 838
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 779 ACGAAAGACGGTCACTAAGAAGCATGTTTGCTTTTGAAGCCACAAGTAAGCCTAAAAGCA 838
Query 839 ACAGTGTAGGTTCCATTACTCACATTGAACATCTGGATTGGAATAAAGATCCTGATGTCG 898
||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 839 ACAGTGTTGGTTCCATTACTCACATTGAACATCTGGAGTCGAATAAAGATCCTGATGTCG 898
Query 899 TCCCCTACTCTATTGGTGATCTCAGTGAACTAGGAGTCGATGGAAATGCAAAGAAGCGTG 958
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 899 TCCCCTACTCTATTGGTGATCTCAGTGACCTAGGAGTCGATGGAATTGCAAAGAAGCGTG 958
Query 959 AGAATTTGGTTTTTGGGGAGGAAGAACTTTGTATTAGAGTGATAGGGAACAAGCAAGAGA 1018
|||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 959 AGAATTTGATTTTTGGAGAGGAAGAACTTTGTATTAGAGTGATAGGGAAGAAGCAAGAGA 1018
Query 1019 TAGAGATAGGGGATTTTACTGAGCATATGAAACTAAAAGATGAAAAGGTTGAAACTCTGT 1078
||||| ||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1019 TAGAGCTAGGGGACTTTACAGAGCATATGAAACTAAAAGATGAGAAGGTTGAAACTCTGT 1078
Query 1079 GTTTGCATCTGATGAACTCTGAGTTAGAATCAAAGCGGTTGCGATCTTGTATTGAAGGAC 1138
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 1079 GTTTGCATCTGATGAACTCTGAGTTAGAATCAAAGCGGTTGAGATCTTGTATCGAAGGAC 1138
Query 1139 TGAGCCAAGAAATGTTACAGTTGAGACATGACAACACACAGTTAGAAGGCATGGTAAATC 1198
||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||| |
Sbjct 1139 TGAGCCAAGAAATGTCACAGTTGAGACACGACAACACACAGTTGGAAGGCATGGTAAACC 1198
Query 1199 GAAGAGGGGAGGAGTCGGTTTCCCTGAAGAATCAAGATTTCAAGACTCAGCCAAAAAGCT 1258
|||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1199 GAAGAGGGGAAGAATCGGTTTCCCTGAAGAACCAAGATTTCAAGACTCAGCCAAAAAGCC 1258
Query 1259 TGGTTCCCCACAAGAACAATATGAGTTGTAGAAGAAAGAACACAAAAACAGAAGCACGAG 1318
|||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 1259 TGGTGCCCCAGAAGAACAATATGAGTTGTAGAAGGAAGAACACAAAAACAGAAGCACTAG 1318
Query 1319 GAGAGCAAGAAAGAGAATTTGATTCAAGGGATGTTTCTCAGGTAAATGCTACCGAGAAAG 1378
|||||||||||||||||| || |||||||| |||||||||| |||||| ||||||||||
Sbjct 1319 GAGAGCAAGAAAGAGAATACGAATCAAGGGAAGTTTCTCAGGAAAATGCCACCGAGAAAG 1378
Query 1379 GAAGGGAATCATACTCTCCTGATGAATTGAGACATTTGACTTTGAAAGCTGCTCAATCTG 1438
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1379 GAAGGGAATCATACTCGCCTGATGAATTGAGACATTTGACTTTGAAGGCTGCTCAATCTG 1438
Query 1439 ATGCTGAAGAAGGATCTGAAAACGAAAGACTCTTACCAGAGAATGAGTGTACCAAAAGAG 1498
|||||||||||||||||||||||||||||| | ||||||||||| ||||||||| |||
Sbjct 1439 ATGCTGAAGAAGGATCTGAAAACGAAAGACACGTACCAGAGAATAAGTGTACCA---GAG 1495
Query 1499 AAAAAGCGAATAGTAAGGAGAGTAAGAGCCTAATA---TCA---AGCACAAGCAATCCAC 1552
||||||| ||| ||||||||| ||||| || ||| ||| ||||||||||||||||
Sbjct 1496 AAAAAGCAAATGGTAAGGAGAATAAGAAACTTATAAAGTCATCCAGCACAAGCAATCCAC 1555
Query 1553 CTTGGAGAATGGATCTTCATGCTCTTGGAGTTTCATACAAGATCAAAAGGCTGAAACAAC 1612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1556 CTTGGAGAATGGATCTTCATGCTCTTGGAGTTTCATACAAGATCAAAAGGCTGAAACAAC 1615
Query 1613 AACTGATGATGCTTGAAAGATATATTGGTAAACCGGAGAGCCAAGAGACTGaaaaaaaCA 1672
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1616 AACTGATGATGCTTGAAAGATATATTGGGAAACCGGAGAGCCAAGAGACTGAAAAAAACA 1675
Query 1673 GCAGTGATACCGGAAAAAGGGCTTTGTTATTGCTCATTACATTGCTCAACAAACAAGTTA 1732
|||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1676 TCAGTGATACCGGGAAAAGGGCTTTGTTATTGCTAATTACATTGCTCAACAAACAAGTTA 1735
Query 1733 CTAGGTATCAATCACTACAAGAGAAGATTGATGATTTGTGCAAAAGAATGCATGTGAATG 1792
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1736 CTAGGTATCAATCACTACACGAGAAGATTGATGATTTGTGCAAAAGAATGCATGTGAATG 1795
Query 1793 ATCC-GCAGAAGATTAGCGGAAAAAACAGAGCAAATGGGGAAGCCAAAACATCACTAGAG 1851
|||| | |||||||||||||||||| ||||| | ||||||||||||||||||||||||||
Sbjct 1796 ATCCAG-AGAAGATTAGCGGAAAAATCAGAGTATATGGGGAAGCCAAAACATCACTAGAG 1854
Query 1852 CATTTCTTAGATGAGACATTTCAGCTGCAAAGATACATAGTGGCAACAGGACAAAAACTG 1911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1855 CATTTCTTAGATGAGACATTTCAGCTGCAAAGATACATAGTGGCAACAGGACAAAAACTG 1914
Query 1912 ATGGAAATCCAATCCAAGATCGCTTCTGGCTTTGTTGAGTTTCTAGTAGACCTAATCACA 1971
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1915 ATGGAAATCCAATCCAAGATAGCTTCTGGCTTTGTTGAGTTTCTAGTAGACCTAATCACA 1974
Query 1972 ACTGAATCCTCCTCTTCTAGTAGCAGCTTTGATCCAGAACGTTTTGCAGAAAACATCAAA 2031
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1975 ACTGAAACCTCCTCTTCTAGTAGCAGCTTTGATCCAGAACGTTTTGCAGAAAACATCAAA 2034
Query 2032 AGTCTGTTTCAGGAAGTGCAAAGAGGTCTTGAGGTTAGGATATCCCGATGCATAGGTGAT 2091
||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 2035 AGTCTGTTTCAAGAAGTGCAAAGAGGGCTTGAGGTTAGGATATCCCGAAGCATAGGTGAT 2094
Query 2092 CTTGAAGGGACATTAGCTCGTGAGGGAATGATACATTTGAAACGACGGGCCGACATGGAG 2151
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2095 CTTGAAGGGACATTAGCTCGTGAGGGAATGATACATTTGAAACGACGGGGCGACATGGAG 2154
Query 2152 CTACGAGTATGAGAAGCTACAAAATGTGTAAATTATTTAC--TTCCTCTTCAGC 2203
||||||||||||||||||||||||| |||||||| ||||| ||||||||||||
Sbjct 2155 CTACGAGTATGAGAAGCTACAAAATATGTAAATTCTTTACAATTCCTCTTCAGC 2208
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87721834235
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5