BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53030.1
Length=1109
Score E
Sequences producing significant alignments: (Bits) Value
Ahg916940 jgi|Araly1|916940|Al_scaffold_0008_1691 1077 0.0
> Ahg916940 jgi|Araly1|916940|Al_scaffold_0008_1691
Length=735
Score = 1077 bits (583), Expect = 0.0
Identities = 696/747 (93%), Gaps = 21/747 (3%)
Strand=Plus/Plus
Query 246 ATGGTTTTTGTTAATGATCATCAAGATCGGTTCTGTTCTTCTAC-ACGTAAGCAGCTTCC 304
||||||||||| || | ||||||||||||||||||| | || | ||| | |||||
Sbjct 1 ATGGTTTTTGTCAACG---ATCAAGATCGGTTCTGTTC--C-ACGTC-TAA--A-CTTCC 50
Query 305 TCTGTTTTCATATCCAATGAATAACATTGCATATGAAACTACTCCGGGATTAGCTACACC 364
|||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||
Sbjct 51 TCTGTTTTCATATCCAATGAATAACAGAGTATATGAAACAACTCCGGGATTAGCTACACC 110
Query 365 TCCGGTTAACATCGCTGGATCTGTTCCTTTTCTTTGGGAAGAAGCTCCGGGAAAGCCTCG 424
||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 111 TCCGGTTAATATCGCAGGATCTGTACCTTTTCTTTGGGAAGAAGCTCCGGGAAAGCCTCG 170
Query 425 TCGTGTTAAAAAACCGGCGAGGTTGAATCAGAAAGGTGTCGTGAGAAGTCTTGAGCTTCC 484
||||||||||||| ||||||||| |||||||| ||||| |||||| |||||||||||||
Sbjct 171 TCGTGTTAAAAAATCGGCGAGGTCAAATCAGAACGGTGTTGTGAGATGTCTTGAGCTTCC 230
Query 485 TCCGAGGTTAGTTTTACCCGGAGAATCAACGACGGTGAATGAGCCTTCTCCGACTACTGT 544
|||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 231 TCCGAGGTTACTTTTGCCCGGAGAATCTACGACGGTGAATGAGCCTTCTCCGACTACTGT 290
Query 545 TCTTGATGGTCCTTACGATTTACGTCGTCGTTCACTGTCGCTTCCGAGATCAGCGGCTGT 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 TCTTGATGGTCCTTACGATTTACGTCGTCGTTCACTGTCGCTTCCGAGATCAGCGGCTGT 350
Query 605 TATTAGGAAGTTGAGAGGAGTTCCGGCGCCGGCGCCGGAGAAAGAAGAGAGATTGGTTGG 664
||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 351 GATTAGGAAGTTAAGAGGAGTTCCGGCGCCGGCGCCGGAGAAAGAACAGAGATTGTTTGG 410
Query 665 TGGGTCTAGTAGATGGGGAAGTTTTGGGAATTGTAAAGAGGTGTCTGAGGGTAT-TTTCG 723
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
Sbjct 411 TGGGTCTAGTAGATGGGGAAGTTTTGGGAAATGTAAAGAGGTGTCTGAGGGTATATTT-G 469
Query 724 ACTTTTCACGTTTTAGAGATGACGGTTATGATTGCCGGCGGGATTGGGCCGGTGGAGGAG 783
||||||||||||||||||||||||||| |||||||||| |||||||| |||| |||||||
Sbjct 470 ACTTTTCACGTTTTAGAGATGACGGTTTTGATTGCCGGAGGGATTGGACCGGAGGAGGAG 529
Query 784 GAGTTGGTAACTTCGCCGGAGA---C-G--CAAAAGTGAAACTTTATAGGA-TTATAAAG 836
|||||||||||||||||||||| | | |||||||||||||||||| || ||||||||
Sbjct 530 GAGTTGGTAACTTCGCCGGAGACGGCGGCACAAAAGTGAAACTTTATA-GAGTTATAAAG 588
Query 837 AAAGGAAGCTTTTTTAATCTCTCTCATACAACAAAGTCAGATTTTTGGTTAAAAATGCAG 896
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 589 AAAGGAAGCTTTTTTAATCTCTCTCATACAACAAAGTCAGATTTCTGGTTAAAAATGCAG 648
Query 897 GCAAGGGTTTACGAAGGGTTTAAGCAAGTGATTCCATGGAAGCGTAAGCAAGAGAATCTG 956
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 649 GCAAGGGTTTACGAAGGGTTTAAGCAAGTGATTCCGTGGAAGCGTAAGCAAGAGAATCTG 708
Query 957 GAAAGAACAAACTCTTCCATTGTTTAA 983
|||||||||||||||||||||||||||
Sbjct 709 GAAAGAACAAACTCTTCCATTGTTTAA 735
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41325242028
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5