BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G53050.2 Length=1661 Score E Sequences producing significant alignments: (Bits) Value Ahg497327 jgi|Araly1|497327|fgenesh2_kg.226__4__AT5G53050.2 2026 0.0 Ahg495371 jgi|Araly1|495371|fgenesh2_kg.8__1187__AT5G53050.3 1943 0.0 > Ahg497327 jgi|Araly1|497327|fgenesh2_kg.226__4__AT5G53050.2 Length=1395 Score = 2026 bits (1097), Expect = 0.0 Identities = 1284/1374 (93%), Gaps = 14/1374 (1%) Strand=Plus/Plus Query 143 CGATGCCGTTTTGCGAGGTCGTGAAAGAAGATGTCGGCCCAGAGACGACGCTTAACAATG 202 ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| Sbjct 33 CGATGCCGTTTTGCGAGGTCGTGAAAGAAGACGTCGGCCCAGAGACGACTCTTAACAATG 92 Query 203 CCGCAATCAAAATCTTCTACAGAACGTACGGTCATGGTCCTATCAAAGCTCTTCTCATCA 262 ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 93 CCGCAATCAAACTCTTCTACAGAACGTACGGTCACGGTCCTATCAAAGCTCTTCTCATCA 152 Query 263 TAGGTTTAGCCGGAACCCATGAGTCATGGGGTCCTCAAATCATGGGATTGACGGGAACGG 322 |||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||| Sbjct 153 TAGGTTTAGCCGGAACCCATGAATCCTGGGGTCCTCAAATCATGGGATTGACGGGGACGG 212 Query 323 ATAAACCCAACGACGATGATGACGACGACGGAGGAATTGTTTCCGATGATTCCGGCATCG 382 |||||||||||||| | | |||||||||||| |||||||||||||| ||||||| Sbjct 213 ATAAACCCAACGAC---G-T-----CGACGGAGGAATCGTTTCCGATGATTCAGGCATCG 263 Query 383 AGGTTTGCGCTTTCGATAATCGTGGTATGGGTCGAAGCTCTGTGCCTACCCACAAATCTG 442 |||| || ||||| || ||||||||||||||||| |||||| | |||||||||||||||| Sbjct 264 AGGTCTGTGCTTTTGACAATCGTGGTATGGGTCGGAGCTCTATACCTACCCACAAATCTG 323 Query 443 AGTACACAACAACGATAATGGCAAATGATTCAATTAGTTTGTTGGATCATTTGGGTTGGA 502 ||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||| Sbjct 324 AGTACTCAACAACGATAATGGCAAATGATTCAATTAATTTGTTAGATCATTTGGGTTGGA 383 Query 503 AGAAAGCTCACATAATTGGTCATTCTATGGGAGCAATGATAGCTTGCAAGTTAGCTGCAA 562 ||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct 384 AGAGAGCTCACATAATTGGCCATTCTATGGGAGCTATGATAGCTTGCAAGTTAGCTGCAA 443 Query 563 TGGCGCCTGAACGGGTTCTTTCTTTGGCGTTGCTTAATGTTACAGGTGGAGGTTTTGAAT 622 ||| ||| |||||||||||||| |||||||||||||| |||||||||||||| || |||| Sbjct 444 TGGTGCCCGAACGGGTTCTTTCGTTGGCGTTGCTTAACGTTACAGGTGGAGGGTTCGAAT 503 Query 623 GCTTCCCTAAGCTTGACCGGAAATCGCTTTCCATTGCGATACGTTTTCTGAAAGCAAAGA 682 | ||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||| Sbjct 504 GTTTCCCGAAGCTTGACCGGCAATCGCTTTCCATTGCGATACGTTTTCTGAAGGCAAAGA 563 Query 683 CCCCTGAACAAAGGGCAGCTGTTGATTTGGACACACATTATTCAAAGGATTACCTAGAAG 742 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 564 CCCCTGAACAAAGGGCAGCTGTTGATTTGGACACACATTATTCAAAGGATTACTTAGAAG 623 Query 743 AATCTGTAGGAACTAATACAAGACGGGCAATTTTATATCAGCAATATGTAAAAGGAATAT 802 |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 624 AATCTGTAGGAACTAACACAAGACGGGCAATTTTATATCAGCAATATGTGAAAGGAATAT 683 Query 803 CAGAAACTGGAATGCAGTCCAAGTACGGGTTTGATGGCCAAATTAACGCTTGTTGGTTAC 862 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 684 CAGAAACTGGAATGCAGTCCAAGTACGGGTTTGATGGCCAAATTAACACTTGTTGGTTAC 743 Query 863 ACAAAATCACAAAAGTAGAGATTGAACTAATCCGCTCGGCTGGATTTCTTGTCTCAGTCA 922 |||||||||||||| |||||| | | |||||||||||||||| |||||||||||||||| Sbjct 744 ACAAAATCACAAAACCAGAGATCGTAGTAATCCGCTCGGCTGGGTTTCTTGTCTCAGTCA 803 Query 923 TTCATGGAAGACATGATGTGATTGCTCAGATATGTTACGCAAGAAGACTGGCACAGAGGC 982 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 804 TTCATGGAAGACATGATGTGATTGCTCAGATATGTTACGCAAGAAGACTGGCACAGAGGC 863 Query 983 TATATCCAGTCGCTAGAATGGTGGATCTTCATGGAGGTCATCTTGTAAGCCACGAGAGAA 1042 ||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||| | Sbjct 864 TATATCCCGTCGCTAGAATGGTAGATCTTCATGGAGGTCATCTTGTAAGCCATGAGAGGA 923 Query 1043 CAGAAGAGGTTAATAAAGCTCTGCTCGAGTTAATCAAGGCGTCAGAAATGAAGAAAATAT 1102 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 924 CAGAAGAGGTTAATAAAGCTCTTCTCGAGTTAATCAAGGCGTCAGAAATGAAGAAAATAC 983 Query 1103 CAACTGATTGGACTAACCTCACCATGGAAACACCTGGTTATTTCAAGAGGAGACTAACAT 1162 |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| || Sbjct 984 CAACTGATTGGACTAACCTCACCATGGAAACACCCGGTTATTTCAAGAAGAGACTAGCAC 1043 Query 1163 TGATTAGAAGCTCAACGGAAGGCAAGAATGTCGCCTCTCCTGCACATTTCATAGCGGAAA 1222 |||||||||||||| ||||||||||||||| || |||||| ||||||||||||||||||| Sbjct 1044 TGATTAGAAGCTCACCGGAAGGCAAGAATGCCGTCTCTCCCGCACATTTCATAGCGGAAA 1103 Query 1223 AGTTCCATGGCTTTCTACTTTTCCTCTTCGGGCTTCTGGTTTTGGCATTTGAGTATTCAA 1282 |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1104 AGTTCCATCGCTTTCTACTTTTCCTCTTCGGACTTCTGGTTTTGGCATTTGAGTATTCAA 1163 Query 1283 GAAGAGCTTTCAGGGCTGTAAACCCCGTCAAAGTTGGACCTTCTCTAACATAACAACAAC 1342 |||||||||| ||||||||||| ||||||||||||||||||| ||| ||||||||||||| Sbjct 1164 GAAGAGCTTTTAGGGCTGTAAAACCCGTCAAAGTTGGACCTTGTCTTACATAACAACAAC 1223 Query 1343 CCTTCACATATCAATTTGTCGACCAAATATTTTCATACAAGCAATGAGCCAGTTCTTCAA 1402 || |||||| |||||||||||||||||||| ||||||||||||||||| || |||||||| Sbjct 1224 CCATCACATTTCAATTTGTCGACCAAATATATTCATACAAGCAATGAGACATTTCTTCAA 1283 Query 1403 TGATCAAGCTGATGAGACATAAGGGCTTAAAGATAT-TATTGCTGCAAATAGAGGCTAAG 1461 ||||||||||||||| ||||||| ||||||||||| | |||||||||| ||| |||||| Sbjct 1284 TGATCAAGCTGATGAAACATAAGAGCTTAAAGATAAGT-TTGCTGCAAACAGAAGCTAAG 1342 Query 1462 AGAAGGAGACAGTGCTTTTACATGGATAG-G-TGATACAAACTGTTGATATATA 1513 ||||| |||||| ||||| ||||||| || | | |||||||||||||||||||| Sbjct 1343 AGAAGAAGACAGAGCTTTCACATGGA-AGAGATTATACAAACTGTTGATATATA 1395 > Ahg495371 jgi|Araly1|495371|fgenesh2_kg.8__1187__AT5G53050.3 Length=1568 Score = 1943 bits (1052), Expect = 0.0 Identities = 1168/1226 (95%), Gaps = 0/1226 (0%) Strand=Plus/Plus Query 143 CGATGCCGTTTTGCGAGGTCGTGAAAGAAGATGTCGGCCCAGAGACGACGCTTAACAATG 202 ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| Sbjct 1 CGATGCCGTTTTGCGAGGTCGTGAAAGAAGACGTCGGCCCAGAGACGACTCTTAACAATG 60 Query 203 CCGCAATCAAAATCTTCTACAGAACGTACGGTCATGGTCCTATCAAAGCTCTTCTCATCA 262 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 61 CCGCAATCAAAATCTTCTACAGAACCTACGGTCATGGTCCTATCAAAGCTCTTCTCATCA 120 Query 263 TAGGTTTAGCCGGAACCCATGAGTCATGGGGTCCTCAAATCATGGGATTGACGGGAACGG 322 |||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 121 TAGGTTTAGCAGGAACCCATGAGTCCTGGGGTCCTCAAATCATGGGATTGACGGGGACGG 180 Query 323 ATAAACCCAACGACGATGATGACGACGACGGAGGAATTGTTTCCGATGATTCCGGCATCG 382 |||||||||||||||| ||||| ||||||||||||||||||||||||| ||| || |||| Sbjct 181 ATAAACCCAACGACGACGATGAAGACGACGGAGGAATTGTTTCCGATGGTTCTGGTATCG 240 Query 383 AGGTTTGCGCTTTCGATAATCGTGGTATGGGTCGAAGCTCTGTGCCTACCCACAAATCTG 442 ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| | Sbjct 241 AGGTTTGCGCTTTCGATAATCGTGGGATGGGTCGGAGCTCTGTGCCTACCCACAAATCCG 300 Query 443 AGTACACAACAACGATAATGGCAAATGATTCAATTAGTTTGTTGGATCATTTGGGTTGGA 502 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 AGTACACAACAACGATAATGGCAAATGATTCAATTAGTTTGTTGGATCATTTGGGTTGGA 360 Query 503 AGAAAGCTCACATAATTGGTCATTCTATGGGAGCAATGATAGCTTGCAAGTTAGCTGCAA 562 ||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct 361 AGAGAGCTCACATAATTGGCCATTCTATGGGAGCTATGATAGCTTGCAAGTTAGCTGCAA 420 Query 563 TGGCGCCTGAACGGGTTCTTTCTTTGGCGTTGCTTAATGTTACAGGTGGAGGTTTTGAAT 622 ||| ||| |||||||||||||| |||||||||||||| |||||||||||||| || |||| Sbjct 421 TGGTGCCCGAACGGGTTCTTTCGTTGGCGTTGCTTAACGTTACAGGTGGAGGGTTCGAAT 480 Query 623 GCTTCCCTAAGCTTGACCGGAAATCGCTTTCCATTGCGATACGTTTTCTGAAAGCAAAGA 682 | ||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||| Sbjct 481 GTTTCCCCAAGCTTGACCGGCAATCGCTTTCCATTGCGATACGTTTTCTGAAGGCAAAGA 540 Query 683 CCCCTGAACAAAGGGCAGCTGTTGATTTGGACACACATTATTCAAAGGATTACCTAGAAG 742 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 541 CCCCTGAACAAAGGGCAGCTGTTGATTTGGACACACATTATTCAAAGGATTACTTAGAAG 600 Query 743 AATCTGTAGGAACTAATACAAGACGGGCAATTTTATATCAGCAATATGTAAAAGGAATAT 802 |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 601 AATCTGTAGGAACTAACACAAGACGGGCAATTTTATATCAGCAATATGTGAAAGGAATAT 660 Query 803 CAGAAACTGGAATGCAGTCCAAGTACGGGTTTGATGGCCAAATTAACGCTTGTTGGTTAC 862 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 CAGAAACTGGAATGCAGTCCAAGTACGGGTTTGATGGCCAAATTAACGCTTGTTGGTTAC 720 Query 863 ACAAAATCACAAAAGTAGAGATTGAACTAATCCGCTCGGCTGGATTTCTTGTCTCAGTCA 922 |||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||| Sbjct 721 ACAAAATCACAAAACCAGAGATCGAAGTAATCCGCTCGGCTGGATTTCTTGTCTCAGTCA 780 Query 923 TTCATGGAAGACATGATGTGATTGCTCAGATATGTTACGCAAGAAGACTGGCACAGAGGC 982 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 TTCATGGAAGACATGATGTGATTGCTCAGATATGTTACGCAAGAAGACTGGCACAGAGGC 840 Query 983 TATATCCAGTCGCTAGAATGGTGGATCTTCATGGAGGTCATCTTGTAAGCCACGAGAGAA 1042 ||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||| | Sbjct 841 TATATCCCGTCGCTAGAATGGTAGATCTTCATGGAGGTCATCTTGTAAGCCATGAGAGGA 900 Query 1043 CAGAAGAGGTTAATAAAGCTCTGCTCGAGTTAATCAAGGCGTCAGAAATGAAGAAAATAT 1102 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 901 CAGAAGAGGTTAATAAAGCTCTTCTCGAGTTAATCAAGGCGTCAGAAATGAAGAAAAGAC 960 Query 1103 CAACTGATTGGACTAACCTCACCATGGAAACACCTGGTTATTTCAAGAGGAGACTAACAT 1162 |||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||| Sbjct 961 CAACTGATTGGACTAACCTCACCATGGAAACACCCGGTTATCTCAAGAGGAGACTAGCAT 1020 Query 1163 TGATTAGAAGCTCAACGGAAGGCAAGAATGTCGCCTCTCCTGCACATTTCATAGCGGAAA 1222 |||||| ||||||| | ||||||||||||| || |||||| |||||||| |||||||||| Sbjct 1021 TGATTACAAGCTCATCAGAAGGCAAGAATGCCGTCTCTCCCGCACATTTTATAGCGGAAA 1080 Query 1223 AGTTCCATGGCTTTCTACTTTTCCTCTTCGGGCTTCTGGTTTTGGCATTTGAGTATTCAA 1282 |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1081 AGTTCCATCGCTTTCTACTTTTCCTCTTCGGACTTCTGGTTTTGGCATTTGAGTATTCAA 1140 Query 1283 GAAGAGCTTTCAGGGCTGTAAACCCCGTCAAAGTTGGACCTTCTCTAACATAACAACAAC 1342 ||||||| |||||||||||||| ||||||||||||||||||| ||| ||||||||||||| Sbjct 1141 GAAGAGCATTCAGGGCTGTAAAACCCGTCAAAGTTGGACCTTGTCTCACATAACAACAAC 1200 Query 1343 CCTTCACATATCAATTTGTCGACCAA 1368 ||||||||| |||||||||||||||| Sbjct 1201 CCTTCACATTTCAATTTGTCGACCAA 1226 Score = 141 bits (76), Expect = 2e-32 Identities = 91/98 (93%), Gaps = 1/98 (1%) Strand=Plus/Plus Query 1544 TCCATGTCAAACATTTGTTCTACGAACATAATATGTAAAGATAAGACATCGAAATCTCAA 1603 |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1447 TCCATGACAAACATTTGTTCTACGAATGTAATATGTAAAGATAAGACATCGAAATCTCAA 1506 Query 1604 ATATAGACTCGTATGTTTTTGTGTACCTATGGAACATA 1641 |||||||| ||||||||| |||||||||| ||||||| Sbjct 1507 -TATAGACTTGTATGTTTTCGTGTACCTATAGAACATA 1543 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62277550575 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5