BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G53300.1 Length=876 Score E Sequences producing significant alignments: (Bits) Value Ahg331685 jgi|Araly1|331685|fgenesh1_pm.C_scaffold_8001028 793 0.0 Ahg945243 jgi|Araly1|945243|scaffold_701472.1 610 5e-174 Ahg493816 jgi|Araly1|493816|fgenesh2_kg.7__3249__AT5G41700.4 420 1e-116 > Ahg331685 jgi|Araly1|331685|fgenesh1_pm.C_scaffold_8001028 Length=447 Score = 793 bits (429), Expect = 0.0 Identities = 441/447 (99%), Gaps = 0/447 (0%) Strand=Plus/Plus Query 142 ATGGCGTCGAAGCGGATCTTGAAGGAATTGAAGGATCTCCAGAAGGATCCACCTACATCA 201 |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 1 ATGGCGTCGAAGCGGATCTTGAAGGAATTGAAGGATCTTCAGAAGGATCCACCCACATCA 60 Query 202 TGTAGCGCAGGTCCTGTTGCTGAAGACATGTTTCACTGGCAGGCAACGATAATGGGTCCT 261 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 61 TGTAGCGCAGGTCCTGTTGCTGAAGACATGTTTCACTGGCAGGCGACGATAATGGGTCCT 120 Query 262 TCAGAGAGTCCTTATGCTGGAGGTGTTTTCCTTGTAACCATCCATTTCCCTCCGGATTAC 321 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 121 TCAGAGAGTCCTTATGCTGGAGGTGTTTTCCTTGTAACCATCCATTTCCCTCCAGATTAC 180 Query 322 CCATTCAAGCCTCCTAAGGTGGCCTTTAGGACCAAGGTGTTCCATCCCAACATTAACAGC 381 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CCATTCAAGCCTCCTAAGGTGGCCTTTAGGACCAAGGTGTTCCATCCCAACATTAACAGC 240 Query 382 AACGGTAGCATTTGCCTCGACATCTTGAAGGAGCAGTGGAGTCCTGCGCTCACCATTTCC 441 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 AACGGTAGCATTTGCCTCGACATCTTGAAGGAGCAGTGGAGTCCTGCGCTCACCATTTCC 300 Query 442 AAGGTGCTGCTATCGATCTGTTCTTTGTTAACCGATCCAAACCCGGATGATCCTTTGGTG 501 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 AAGGTGCTGCTATCGATCTGTTCTTTGTTAACCGATCCAAACCCGGATGATCCTTTGGTG 360 Query 502 CCCGAGATAGCTCACATGTACAAGACTGACAAGAACAAGTACGAGTCCACTGCACGAAGC 561 || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 361 CCTGAGATAGCTCACATGTACAAGACTGACAAGAACAAGTACGAGTCCACTGCACGGAGC 420 Query 562 TGGACTCAGAAGTATGCCATGGGCTAA 588 ||||||||||||||||||||||||||| Sbjct 421 TGGACTCAGAAGTATGCCATGGGCTAA 447 > Ahg945243 jgi|Araly1|945243|scaffold_701472.1 Length=500 Score = 610 bits (330), Expect = 5e-174 Identities = 413/454 (91%), Gaps = 2/454 (0%) Strand=Plus/Plus Query 134 TTTTGGATATGGCGTCGAAGCGGATCTTGAAGGAATTGAAGGATCTCCAGAAGGATCCAC 193 ||||||||||||| ||||| ||||| |||||||||||||||||||| ||||||||||| | Sbjct 13 TTTTGGATATGGCATCGAAACGGATTTTGAAGGAATTGAAGGATCTGCAGAAGGATCCTC 72 Query 194 CTACATCATGTAGCGCAGGTCCTGTTGCTGAAGACATGTTTCACTGGCAGGCAACGATAA 253 |||| |||||||||||||| || ||||| |||||||||||||| |||||||| ||||||| Sbjct 73 CTACTTCATGTAGCGCAGGACCCGTTGCGGAAGACATGTTTCATTGGCAGGCTACGATAA 132 Query 254 TGGGTCCTTCAGAGAGTCCTTATGCTGGAGGTGTTTTCCTTGTAACCATCCATTTCCCTC 313 ||||||| || || || |||||| ||||||| |||||||||||||||||||||||||||| Sbjct 133 TGGGTCCATCGGAAAGCCCTTATTCTGGAGGAGTTTTCCTTGTAACCATCCATTTCCCTC 192 Query 314 CGGATTACCCATTCAAGCCTCCTAAGGTGGCCTTTAGGACCAAGGTGTTCCATCCCAACA 373 | ||||||||||| ||||||||||||||||| |||||||| |||||||||||||| |||| Sbjct 193 CAGATTACCCATTTAAGCCTCCTAAGGTGGCTTTTAGGACGAAGGTGTTCCATCCAAACA 252 Query 374 TTAACAGCAACGGTAGCATTTGCCTCGACATCTTGAAGGAGCAGTGGAGTCCTGCGCTCA 433 |||| ||||| || ||||| || |||||||||||||||||||||||||| ||||| || | Sbjct 253 TTAATAGCAATGGGAGCATCTGTCTCGACATCTTGAAGGAGCAGTGGAGCCCTGCTCTGA 312 Query 434 CCATTTCCAAGGTGCTGCTATCGATCTGTTCTTTGTTAACCGATCCAAACCCGGATGATC 493 | |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| Sbjct 313 CAATTTCCAAGGTGCTGCTATCTATCTGTTCTTTGTTAACGGATCCAAACCCGGATGATC 372 Query 494 CTTTGGTGCCC-GAGATAGCTCACATGTACAAGACTGACAAGAACAAGTACGAGTCCACT 552 ||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 373 CTTTGGT-CCCTGAGATAGCTCACATGTACAAGACAGACAAGAACAAGTACGAGTCCACT 431 Query 553 GCACGAAGCTGGACTCAGAAGTATGCCATGGGCT 586 || || | |||||| || |||||||||||||||| Sbjct 432 GCTCGGACCTGGACCCAAAAGTATGCCATGGGCT 465 > Ahg493816 jgi|Araly1|493816|fgenesh2_kg.7__3249__AT5G41700.4 Length=675 Score = 420 bits (227), Expect = 1e-116 Identities = 382/456 (84%), Gaps = 13/456 (3%) Strand=Plus/Plus Query 142 ATGGCGTCGAAGCGGATCTTGAAGGAATTGAAGGATCTCCAGAAGGA---TCC-ACCTAC 197 ||||||||||| |||||||||||||| |||||||||||||||| || ||| |||| | Sbjct 67 ATGGCGTCGAAACGGATCTTGAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCT-C 125 Query 198 AT-CATGTAGCGCAGGTCCTGTTGCTGAAGACATGTTTCACTGGCAGGCAACGATAATGG 256 | ||| | | |||||| |||||||||||||||||||| ||||| || || ||||||| Sbjct 126 CTGCAT-TTTTGTAGGTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATAATGG 184 Query 257 GTCCTTCAGAGAGTCCTTATGCTGGAGGTGT-TTTCCTTGTAACCATCCATTTCCCTCCG 315 ||||| |||||||||| ||| | || ||||| ||| || || ||||| || |||||||| Sbjct 185 GTCCTGCAGAGAGTCCGTATTCAGGCGGTGTGTTT-CTCGTTACCATTCACTTCCCTCCT 243 Query 316 GATTACCCATTCAAGCCTCCTAAGGTGGCCTTTAGGACCAAGGTGTTCCATCCC-AACAT 374 || ||||||||||| ||||| ||||| || |||||||| |||||||| || ||| || || Sbjct 244 GACTACCCATTCAAACCTCCAAAGGTTGCATTTAGGACGAAGGTGTTTCA-CCCTAATAT 302 Query 375 TAACAGCAACGGTAGCATTTGCCTCGACATCTTGAAGGAGCAGTGGAGTCCTGCGCTCAC 434 ||||||||||| ||||||||||| ||||| ||||| || || ||||| || || ||||| Sbjct 303 CAACAGCAACGGAAGCATTTGCCTTGACATTTTGAAAGAACAATGGAGCCCCGCTCTCAC 362 Query 435 CATTTCCAAGGTGCTGCTATCGATCTGTTCTTTGTTAACCGATCCAAACCCGGATGATCC 494 ||||||||||||| |||| ||||| ||||| ||||||| |||||||| || ||||| || Sbjct 363 CATTTCCAAGGTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAATCCAGATGACCC 422 Query 495 TTTGGTGCCCGAGATAGCTCACATGTACAAGACTGACAAGA-ACAAGTACGAGTCCACTG 553 |||||||| ||||| || ||||||||||| || ||| ||| |||||||||| |||||| Sbjct 423 GTTGGTGCCAGAGATTGCACACATGTACAAAACCGAC-AGAGCCAAGTACGAGGCCACTG 481 Query 554 CACGAAGCTGGACTCAGAAGTATGCCATGGGCTAAA 589 || ||| ||||||||||||||||||||||||||||| Sbjct 482 CAAGAAACTGGACTCAGAAGTATGCCATGGGCTAAA 517 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32442602367 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5