BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G53420.1 Length=1217 Score E Sequences producing significant alignments: (Bits) Value Ahg495414 jgi|Araly1|495414|fgenesh2_kg.8__1230__AT5G53420.1 1736 0.0 Ahg945248 jgi|Araly1|945248|scaffold_701477.1 254 1e-66 > Ahg495414 jgi|Araly1|495414|fgenesh2_kg.8__1230__AT5G53420.1 Length=1158 Score = 1736 bits (940), Expect = 0.0 Identities = 1114/1190 (94%), Gaps = 43/1190 (4%) Strand=Plus/Plus Query 1 AAGGCAAGAGGAGAGCCAAGTACCAAACTTTTTCCTTCAGGGTTTTCCTCTCAAAATCCC 60 |||||||||||||||| |||||||||||||||||| ||||||||||||||||||| || | Sbjct 1 AAGGCAAGAGGAGAGCTAAGTACCAAACTTTTTCCCTCAGGGTTTTCCTCTCAAATTCAC 60 Query 61 AACTTGGCCTCTGTTTTT-GCTTT--C--T-TTTATGTTCTCTTCTTCTCTAAAAAC-CA 113 |||||||||||||||||| | ||| | | |||||||||||||||||||||||||| || Sbjct 61 AACTTGGCCTCTGTTTTTCGTTTTGGCTTTCTTTATGTTCTCTTCTTCTCTAAAAACTCA 120 Query 114 TCTCATACTTCCAAGAATTTCTCTCACAAAGACCAAGAACTCAAAATGTATCAAGATTCT 173 | || |||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 121 TTTCCTACTTCCAAGAATTTCTCTCACAAAGACCAAGAACTTGAAATGTATCAAGATTCT 180 Query 174 GGATTAATGCTCCGTTACATGCAAAACTGTCCCCCAGATATTCAACAATTCGAAGACCTC 233 ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 181 GGATTAATGATCCGTTACATGCAAAACTGTTCCCCAGATATTCAACAATTCGAAGACCTC 240 Query 234 TTCAAATCATACAAACTCTCCGATGAAATGAACAACACTTTTGTTGAGTCATCAAACATA 293 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TTCAAATCATACAAACTCTCCGATGAAATGAACAACACTTTTGTTGAGTCATCAAACATA 300 Query 294 TCTGAGTATGATATTGGAGAAGAAAGTGATCTTTTTAGAGCTCCTGATCCAATTCTTGAA 353 ||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||| Sbjct 301 TCTGAGTATGATATTGGAGTAGAAGGTGATCTTTTTAAAGCTCCTGATCCAATTCTTGAA 360 Query 354 GAACCAATCTTAACC-GTTGATCCACTCTCTGCTGCTTTGACTATGATCTCTTGTGGTGA 412 |||| ||||||| || ||||||||||||||||||| |||||||||||||||||||||||| Sbjct 361 GAACAAATCTTA-CCTGTTGATCCACTCTCTGCTGTTTTGACTATGATCTCTTGTGGTGA 419 Query 413 AGACACTTCACAAGGTCTTTGTGAGCTTCCTGATCTTGGTTCATTGCAGAGTGGTCAACA 472 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 AGACACTTCACAAGGTCTTTGTGAGCTTCCTGATCTTGGTTCATTGCAGAGTGGTCAACA 479 Query 473 GCTTCTTGACAAAGCTTTTTATGAATGTGAGCAAGATCTTATGATGAAATCAGCTATGGA 532 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 480 GCTTCTTGACAAAGCTTTTTATGAATGTGAGCAAGATCTCATGATGAAATCAGCTATGGA 539 Query 533 GTCTCCATTCTCTGATGTTTTAGACATCAAGAACATCTCTGTTGTGACGACAATCAATGA 592 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 GTCTCCATTCTCTGATGTTTTAGACATCAAGAACATCTCTGTTGTGACGACAATCAATGA 599 Query 593 GAACCAGGATATGCAAAAGAGTGTTAGCTCGGGGAATTTGAGCTCTATGGATTGGTCACA 652 |||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 600 GAACCAAGATATGCAGAAGAGCGTTAGCTCGGGGAATTTGAGCTCTATGGATTGGTCACA 659 Query 653 TGCACAACAAGAGACTGTAATGATTCAGAATTTTCCTGATTTCGATTTTGGTTATGGAAT 712 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 660 TGCACAGCAAGAGACTGTAATGATTCAGAATTTTCCTGATTTCGATTTTGGTTATGGGAT 719 Query 713 GCGAAGAGCCTTTAGTGAAGGCGACATACAGAAACTTGGGGCAGGTCTTGTTCAATCTCC 772 ||||||||||||||||||||||||||||||| | |||||| || ||||| Sbjct 720 GCGAAGAGCCTTTAGTGAAGGCGACATACAG------G-------TCTTGTCCA-TCTCC 765 Query 773 ACTAGATAGGATTATTGTGAGCTGCACTTCAGAAGATCGCCGTGAGAAGCTTTCTCGATA 832 | | |||||||||||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct 766 A-TGGATAGGATTATTGTGAGCTGTACTTCAGAGGATCGCCGTGAGAAGCTTTCTCGATA 824 Query 833 CAAGAACAAGAAGAGCAGGCGAAATTTCGGGCGTAAGATTAAGTATGCTTGCAGGAAAGC 892 |||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||| Sbjct 825 CAAGAACAAGAAGAGCAGACGAAATTTCGGGCGTAAAATCAAGTATGCTTGCAGGAAAGC 884 Query 893 TCTTGCAGATAGCCAACCGAGAGTCCGAGGAAGGTTTGCGAAAACAGAGGAGAGGAAATA 952 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 885 TCTTGCAGATAGCCAACCTAGAGTCCGAGGAAGGTTTGCGAAAACAGAGGAGAGGAAATA 944 Query 953 GAATGGTTCAAGAAAAGGGCTCAAAGGAAGGAGACTAAGCAAAAGGAAGAAACATGAAGA 1012 ||||||||||| ||||||||||||||| ||||||||||||||||||||||||| | | || Sbjct 945 GAATGGTTCAAAAAAAGGGCTCAAAGGGAGGAGACTAAGCAAAAGGAAGAAAC-T-A-GA 1001 Query 1013 ATAAGGAGATAAAGCCCATCTCATTAGAAACTAGTTTTGTTTTATATATCTATGTATAAA 1072 | | | | |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1002 A---G-A-A-----CCCATCTCATTAGAAACTAGTTTTGTTTTATA-ATCTATGTATAAA 1050 Query 1073 -CTTTAAAATCTTATAAGCATCCAATTAGTTTTTTGTATATAAAGGGTTTCTCTAAATAA 1131 ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| Sbjct 1051 ACTTTAAAATCTTATAAGCATCCAATGAGTTTTT-GTATATAAAGGGTTTCTCTAAATAA 1109 Query 1132 GCTTT-AAGTAAAGAAATTGTAGCTAAAGAAA-GTTTGTATTATTGTAGT 1179 ||||| |||||||||||||||||||||| ||| ||||||||||||||||| Sbjct 1110 GCTTTTAAGTAAAGAAATTGTAGCTAAA-AAATGTTTGTATTATTGTAGT 1158 > Ahg945248 jgi|Araly1|945248|scaffold_701477.1 Length=823 Score = 254 bits (137), Expect = 1e-66 Identities = 286/354 (81%), Gaps = 26/354 (7%) Strand=Plus/Plus Query 608 AAAGAGTGTTAGCTCGGGGAATTTGAGCTCTATGGAT-TGGTCACATGCACAACAAGAGA 666 ||||||||| |||||||| || ||||||| |||||| |||| ||| | | || || || Sbjct 449 AAAGAGTGTGAGCTCGGGAAACCTGAGCTCAATGGATATGGT-ACA-G--C-ACGAG-GA 502 Query 667 CTGTAATGATTCAGAATTTTCCTGATTTCGAT--TTTGG-TTATGGAATGCGAAGAGCCT 723 || ||||||||| || ||||||||| | ||| |||||| ||| ||||||||| Sbjct 503 -TGCGGTGATTCAGAGCTTCCCTGATTTCCCTCCAGTGGATTATGGCATGAGAAGAGCCT 561 Query 724 TTAGTGAAGGCGACATACAGAAACTTGGG----------GCAGGTCTTGTTCAATCTCCA 773 |||||||| |||| ||||||| || |||| || |||||||| || ||| || Sbjct 562 TTAGTGAAAGCGATATACAGACAC-TGGGAACTACAAATGCGGGTCTTGTCCAGTCT-CA 619 Query 774 -CTAGATAGGATTATTGTGAGCTGCACTTCAGAAGATCGCCGTGAGAAGCTTTCTCGATA 832 || ||| | || || | || ||||| || || || ||||||||||||||||||||||| Sbjct 620 GCTGGATCGAATAATCATAAGTTGCACCTCTGAGGACCGCCGTGAGAAGCTTTCTCGATA 679 Query 833 CAAGAACAAGAAGAGCAGGCGAAATTTCGGGCGTAAGATTAAGTATGCTTGCAGGAAAGC 892 || ||||||||||||||||||||||||||||||||| || ||||||||||||||||| || Sbjct 680 CAGGAACAAGAAGAGCAGGCGAAATTTCGGGCGTAAAATCAAGTATGCTTGCAGGAAGGC 739 Query 893 TCTTGCAGATAGCCAACCGA-GAGTCCGAGGAAGGTTTGCGAAAACAGAGGAGA 945 ||||||||||| ||||||| || |||||||||||||||||||||||||||||| Sbjct 740 ACTTGCAGATAGTCAACCGAGGA-TCCGAGGAAGGTTTGCGAAAACAGAGGAGA 792 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45442517064 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5