BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G53490.3 Length=955 Score E Sequences producing significant alignments: (Bits) Value Ahg495426 jgi|Araly1|495426|fgenesh2_kg.8__1242__AT5G53490.1 1118 0.0 > Ahg495426 jgi|Araly1|495426|fgenesh2_kg.8__1242__AT5G53490.1 Length=893 Score = 1118 bits (605), Expect = 0.0 Identities = 731/792 (92%), Gaps = 8/792 (1%) Strand=Plus/Plus Query 160 ATGTTCTCAGCAGGAGAAAACAGAGAAAATGGTGAAGGTGTAAAGAAGAGTCTCTTTCCT 219 |||||||| || ||||||||||||||||||||||||||| ||||||||| | || || Sbjct 105 ATGTTCTCCGCTGGAGAAAACAGAGAAAATGGTGAAGGTACCAAGAAGAGTTTGTTGCCG 164 Query 220 CTTAAGGAGCTTGGATCTATCGCTTGCGCAGCTCTCTGTGCTTGCACTCTTACAATAGCT 279 | |||||||||||| |||||||||||| ||||| |||||||||||||||| || ||| Sbjct 165 ATAAAGGAGCTTGGAAGTATCGCTTGCGCTGCTCTTTGTGCTTGCACTCTTATTATGGCT 224 Query 280 TCTCCTGTTATTGCTGCTAACCAGAGACTTCCTCCGTTATCAACAGAACCAGACCGGTGT 339 |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 225 TCTCCTGTAATTGCTGCTAACCAGAGACTTCCTCCACTATCAACAGAACCAGACCGGTGT 284 Query 340 GAAAAAGCATTTGTTGGTAACACGATAGGTCAAGCAAATGGTGTCTATGACAAACCACTG 399 ||||||||||| ||||||||||||||||||||||||||||| || ||||||||||| || Sbjct 285 GAAAAAGCATTCGTTGGTAACACGATAGGTCAAGCAAATGGGGTTTATGACAAACCGCTA 344 Query 400 GATCTTAGGTTCTGTGATTACACAAATGATCAAACTAATCTCAAAGGCAAGACTCTCTCT 459 |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 345 GATCTTAGGTTCTGTGATTACACAAACGATCAGACTAATCTCAAAGGCAAGACTCTCTCT 404 Query 460 GCAGCCTTGATGGTTGGGGCTAAGTTTGATGGTGCAGATATGACTGAAGTTGTTATGTCA 519 |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 405 GCAGCCTTGATGGTAGGAGCTAAGTTTGATGGTGCAGATATGACTGAAGTTGTTATGTCA 464 Query 520 AAAGCTTATGCTGTAGAAGCAAGCTTTAAAGGGGTGAATTTCACTAATGCTGTTATCGAT 579 ||||||||||| || |||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 465 AAAGCTTATGCCGTTGAAGCAAGCTTTAAGGGGGTGAATTTCACGAATGCTGTTATCGAT 524 Query 580 CGGGTGAATTTCGGGAAATCGAATCTGAAAGGTGCGGTGTTTAGGAACACGGTATTATCC 639 ||||||||||| |||||||||||| |||||||||||||||| |||||||||| |||||| Sbjct 525 CGGGTGAATTTTGGGAAATCGAATTTGAAAGGTGCGGTGTTCCGGAACACGGTGTTATCC 584 Query 640 GGTTCGACATTTGAGGAGGCAAATTTGGAGGATGTGGTCTTTGAGGACACTATCATTGGT 699 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 585 GGTTCGACATTCGAGGAGGCAAATTTGGAGGATGTGGTCTTTGAGGACACTATCATTGGT 644 Query 700 TACATAGACCTTCAGAAAATATGTAGGAATGAGTCCATAAACGAAGAAGGAAGACTTGTG 759 ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 645 TACATAGACCTTCAGAAAATATGTAGGAACGAGTCGATAAACGAAGAAGGAAGACTTGTG 704 Query 760 TTGGGATGCCGATAGAGAAGAGAGAAGGTTTTGATTTGAATGTATTATATATGTAAGATT 819 ||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||| Sbjct 705 TTGGGTTGCCGATAGAGAAGAGAGAAAGATTTGATTTGAATGTATTATATATGTAAGATT 764 Query 820 TAAGATTTGTTGACACAAAGATGTATGAAAC----TAAGTAAAGGTTGAAGGATAGGAGT 875 | ||||||| ||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 765 TGAGATTTG---ACACAAAGATGTATGAAACAAAGTAAGTAAAGGTTCAAGGATAGGAGT 821 Query 876 CAAGAGAGTTATGAGAGGTTGTATAATCGA-TTCTTGTAAATTCTGTAACCAAACAAAAG 934 | ||||||||||||| |||||| ||||| | ||||||||||||||||| ||||||||||| Sbjct 822 CGAGAGAGTTATGAGCGGTTGTGTAATCAAATTCTTGTAAATTCTGTAGCCAAACAAAAG 881 Query 935 GCGTTTTCTCTG 946 || ||||||||| Sbjct 882 GCATTTTCTCTG 893 Score = 148 bits (80), Expect = 6e-35 Identities = 97/105 (92%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 14 ACACTTCCATGGCTTCGCTTCCTGTTCAATTCACGAGGAATCAAATCTCTTCACCGTTTT 73 ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1 ACACTCCCATGGCTTCGCTTCCTGTTCAATTCACGAGGAATCATTTCTCTTCACCGTTTT 60 Query 74 TCTCTGT-AAACCTCCGCCGTGAGCCTAGATCTTTAGTAACAGTA 117 |||| || |||| |||||| |||||| |||||||||||||||||| Sbjct 61 TCTCCGTTAAAC-TCCGCCATGAGCCGAGATCTTTAGTAACAGTA 104 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35454312810 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5