BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G53500.1 Length=3080 Score E Sequences producing significant alignments: (Bits) Value Ahg495427 jgi|Araly1|495427|fgenesh2_kg.8__1243__AT5G53500.1 4416 0.0 > Ahg495427 jgi|Araly1|495427|fgenesh2_kg.8__1243__AT5G53500.1 Length=2999 Score = 4416 bits (2391), Expect = 0.0 Identities = 2740/2904 (94%), Gaps = 41/2904 (1%) Strand=Plus/Plus Query 184 tttagactctct-ACCACTGTTGCTACTTCTTTGGGATGTGTTTGTTCCAATTTCGAAGA 242 |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 120 TTTAGACTCTCTAACCAC---AGCTACTTCTTTGGGATGTGTTTGTTCCAATTTCGAAGA 176 Query 243 AACCTCGTGAAGACGAACCAACCCATTTTGCCTTGTAGGTTGCTTGTTTGGAAGCAAAAC 302 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 177 AACCTCGTGAAGACGAACCAACCCATTTTGCCTTGTAGGTTGCTTGTTTGGAAGCAAAAC 236 Query 303 TGGCAGTTGGGGAAATTCCTCTTTTGAGAGAAAAGCATTCTTCTTCTTTAAGCTCTGTTT 362 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 237 TGGCAGTTGGGGAAATTCCTCTTTTGAGAGAAAAGCA---TTCTTCTTTAAGCTCTGTTT 293 Query 363 CATGGATTGACAATAGCTCAAGGAATAATGGATTACTTATCTCAAGAGGAAGATTTGCAG 422 |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 294 CATGGATTGACAATTGCTCAAGGAATAATGGATTACTTGTCTCAAGAGGAAGATTTGCAG 353 Query 423 TTTTTCGATGCTAACGAAGAGATGATGGCATTGAATCCAAGTGGTTTTGGATTT-GATGT 481 ||||||||||| ||||||||||||||||||| |||||||||||||||||| ||| ||||| Sbjct 354 TTTTTCGATGCCAACGAAGAGATGATGGCATCGAATCCAAGTGGTTTTGG-TTTCGATGT 412 Query 482 ATGGAATGATTCACCTGGAAGTGTTGTGGAGCGGCGGAGGAAGTTCTTGGAGTGGATGGG 541 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 413 GTGGAATGATTCACCTGGAAGTGTTGTGGAGAGGCGGAGGAAGTTCTTGGAGTGGATGGG 472 Query 542 AGTTGAAGAAGAAGGGCGTGTTGAGACGAAGGATTCGGTTTCTGGAAGTAGTGTGGAGTC 601 |||||||||||||| ||||||||| |||||| |||||| |||| |||||||||||||| Sbjct 473 AGTTGAAGAAGAAGATCGTGTTGAGTCGAAGGGTTCGGTCTCTGTAAGTAGTGTGGAGT- 531 Query 602 TT-GTTTTGATGGAGGTGAAGAGAATTCTGTTGAAGCTGAGGAGAGATCTGGAGAG-TGC 659 || ||||||||| || |||||||| |||| |||||||||||||||||||||||| | | Sbjct 532 TTGGTTTTGATGAAGCTGAAGAGATTTCTATTGAAGCTGAGGAGAGATCTGGAG-GTTTT 590 Query 660 AGCAGTTCTTCTAGTGAGGTTTCATTGTCTGGTTCAAGCGTTGAAGTTTCCGAGGAATTG 719 ||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||| Sbjct 591 AGCAGTTCTTCTAGTCAAGTTTCGTTGTCTGGTTCAAGCGTTGAAGTTTCCGAGGAATTG 650 Query 720 TCTTTGAGAGTAGACAGAAATGTGGGTGGATGTGATGTGACGAGAAGACAAAGCTCTTCA 779 ||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||| Sbjct 651 TCTTTGAGAGTAGACAGAAATGTGGGTGGGTGTGATGTAACGAGAAGGCAAAGCTCTTCG 710 Query 780 ATGGCGTCATGTTCTAG-TTCCAGATATTGCCAAGTGAAGGAAACCGAGAAGCAGAGGAA 838 ||||| ||||||||| | |||||| |||||| |||||||||||||||||||||||||||| Sbjct 711 ATGGCATCATGTTCT-GATTCCAGGTATTGCGAAGTGAAGGAAACCGAGAAGCAGAGGAA 769 Query 839 TATCGCAGGGCTAGTCACGAGTTTTAAGAAGGGATGGTTATCGAGGCTTCGGTCTATGGG 898 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 770 TATCGCAGGGCTAGTCACGAGGTTTAAGAAGGGATGGTTATCGAGGCTTCGGTCTATGGG 829 Query 899 ATGTACCGCGGATACAAATATCGAATCTGGTGGTAGAATGAGAGCTTCTTCTGGTTATGG 958 ||||||||||||||||| || ||||||||||||||||| |||||||||| ||||||||| Sbjct 830 CTGTACCGCGGATACAAAGATTGAATCTGGTGGTAGAATCAGAGCTTCTTTTGGTTATGG 889 Query 959 TGATGTGATTTCAAGAGTTAAGGTTAAGCATTGTAAGAAGCAGGCAAAGGAGCTTTCAGC 1018 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 890 TGATGTGATTTCAAGAGTTAAGGTTAAGCATTGTAAGAAACAGGCAAAGGAGCTTTCAGC 949 Query 1019 TCTTTATCAGAGTCAAGACATTAAAGCTCATGATGGTGCCATCTTGGCGATGAAATTTAG 1078 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 950 TCTTTATCAGAGTCAAGACATTAAAGCTCATGATGGTGCCATCTTGGCTATGAAATTTAG 1009 Query 1079 CAACGATGGGAAGTTTCTTGCAAGCTCTGGTGAAGATGGGATTGTGAGGGTGTGGAAAGT 1138 | ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct 1010 CGGCGATGGGAAGTTTCTTGCAAGCTCTGGTGAAGATGGGATTGTGCGTGTGTGGAAAGT 1069 Query 1139 CGTTGAGGATAAGAAATCTAGACTACGAAGGGATTGCCTTAACGAGATAGATCCTTCGTG 1198 ||| ||||||| || |||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1070 CGTGGAGGATAGGAGATCTAGACTACGAAGGGATTGCCTTAACGAGATAGACCCTTCGTG 1129 Query 1199 TATGTACTTTGAGGTAAATGATCTTTCTCAGTTGAAACCAGTTTTGGTAAATGAGGAGAA 1258 ||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 1130 TATATACTTTGAGGTAAATGATCTTTCTCAGTTGAAACCGGTTTTGGTGAATGAGGAGAA 1189 Query 1259 ACCAAAGAAGACTACAGAAAGTTTCAGGAAAACATCTGATTCAGCCTGTGTTGTCTTCCC 1318 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1190 ACCAAAGAAGACTACAGAAAGTTTCAGGAAAACATCTGATTCAGCCTGCGTTGTCTTCCC 1249 Query 1319 TCCTAAAGTTTTTCGGATTATGGAAAAACCATTATATGAATTCCGTGGGCACACGGGTGA 1378 |||||||||||| ||||| ||||| |||||||||||||||||||| |||||||||||||| Sbjct 1250 TCCTAAAGTTTTCCGGATAATGGAGAAACCATTATATGAATTCCGCGGGCACACGGGTGA 1309 Query 1379 AGTCTTGGACATCTCATGGTCAAAAGATAATTAT-TTGCTTTCGGCGTCAATGGATAAAA 1437 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct 1310 AGTCTTGGACATCTCATGGTCAAAAGATAATTATCTT-CTTTCGGCGTCAATGGATAAAA 1368 Query 1438 CTGTCCGCCTTTGGAAAGTTGGTAGCAATGATTGTCTTGGAGTTTTCGCTCACAATAGTT 1497 ||||||| ||||||||||| |||||||||| ||||||||||||||||| ||||||||||| Sbjct 1369 CTGTCCGGCTTTGGAAAGTCGGTAGCAATGCTTGTCTTGGAGTTTTCGTTCACAATAGTT 1428 Query 1498 ATGTAACCTCTGTTCAGTTCAACCCGGTAAATGAGAATTATTTCATGAGTGGTTCAATTG 1557 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1429 ATGTAACCTCTGTTCAGTTCAACCCGGTAAATGAGAATTACTTCATGAGTGGTTCAATTG 1488 Query 1558 ATGGAAAGGTTCGAATTTGGAACATTTCCGGTTGCAGCGTTGTTGATTGGGCAGATCTCA 1617 ||||||| |||||||| ||||||||||| ||||||| ||||||||||||||||||||||| Sbjct 1489 ATGGAAAAGTTCGAATCTGGAACATTTCTGGTTGCAACGTTGTTGATTGGGCAGATCTCA 1548 Query 1618 AAGACATTATATCGGCAGTGTGTTATCGTCCGGATGGACAAGGTGGAATCATCGGTTCTC 1677 ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 1549 AAGACATTATATCGGCAGTGTGTTATCGTCCGGATGGACAAGGAGGAATTATCGGTTCTC 1608 Query 1678 TGAACGGGAGTTGCAGATTCTTTAACATGTCTGGAGAATTTTTAGAACTGGACTCTCAGA 1737 ||| ||| ||||| ||||||||||||||||||||||||| ||| |||||||||||||||| Sbjct 1609 TGACCGGAAGTTGTAGATTCTTTAACATGTCTGGAGAATATTTGGAACTGGACTCTCAGA 1668 Query 1738 TACATTTGCATAACAAAAAGAAGTCTTCAAATAAACGCATAACTGGTTTTCAGTTCTTAC 1797 ||||||||||||||||||||||||||||||||||| | |||||||| |||||||| |||| Sbjct 1669 TACATTTGCATAACAAAAAGAAGTCTTCAAATAAAAGAATAACTGGGTTTCAGTTTTTAC 1728 Query 1798 CACAAGAACCG-ACTAAAGTCCTGGTTGTTTCCGCGGATTCCAAAGTCAGAATTCTCCAA 1856 ||||||| ||| || |||||||||||||||||||| |||||||||||||||||| ||||| Sbjct 1729 CACAAGACCCGAAC-AAAGTCCTGGTTGTTTCCGCCGATTCCAAAGTCAGAATTATCCAA 1787 Query 1857 GGCAACAATGTCGTCAGAAAATACAAAGGCGTTTGCAAGACGAGAAGCCTCACATCAGCA 1916 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1788 GGCAACAATGTCGTCGGAAAATACAAAGGCGTTTGCAAGACGAGAAGCCTCACATCAGCG 1847 Query 1917 TCTCTCACATCTGATGGAAAACACATTGTTTCAGCTTGTGAGGACTCCAATGTATATATA 1976 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1848 TCTCTCACATCTGATGGAAAACACATTGTTTCAGCTTGTGAGGACTCCAATGTATATATA 1907 Query 1977 TGGAGCAATGATGAGGAATCAGAAACCAAAAAGATTCGATCTTTTGAACGTTTCTCCGCC 2036 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1908 TGGAGTAATGATGAGGAATCAGAAACCAAAAAGATTCGATCTTTTGAACGTTTCTCCACC 1967 Query 2037 AATGCATCAGTTGCAGCAACATGGTGTGGATTCTCAGATCACAACACAACTCTCCCGTTT 2096 |||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 1968 AATGCATCCGTTGCAGCCACCTGGTGTGGATTCTCAGATCACAACACAACTCTCCCGTTT 2027 Query 2097 TCTTCTCCATCATGCT-TATCTCACAACGAAGGATTTGTCCCCGGATCAATATCCAAAGG 2155 |||||||| || || | |||||| || ||||||||||||||||||||||||||||||||| Sbjct 2028 TCTTCTCCCTCTTG-TCTATCTCTCAGCGAAGGATTTGTCCCCGGATCAATATCCAAAGG 2086 Query 2156 GAGTGCGACATGGCCAGAGGAAAACCTACCCGCAAATCCTCTGTCCACATCCGCGATGAA 2215 || ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct 2087 AAGCGCGACATGGCCAGAGGAAAACCTACCCGCAAATCCACTGTCTACATCCGCGATGAA 2146 Query 2216 TGCATCTCATTACAAGTTTCTCAAGTCCTCTTACCAGAGAGCATCCAGCTCTCTATCTTG 2275 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 2147 TGCATCTCATTACAAGTTTCTCAAGTCCTCTTACCAGAGAGCATCTAGCTCTCTATCTTG 2206 Query 2276 GGGTATGGTCATAGTCACAGGTGGTTGGGATGGACAGATAAGAACATTTCAGAACTACGG 2335 ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| || Sbjct 2207 GGGTATGGTCATAGTCACAGGTGGTTGGGATGGACGGATCAGAACATTTCAGAACTATGG 2266 Query 2336 GTTGCCTGTGACTACTT-GA-AAAAACCTGTTTCGTTTTCCCAACTTTGGAAAACAAATC 2393 |||||||||||||||| || ||||| | |||||||||||| |||||||||||||||||| Sbjct 2267 CTTGCCTGTGACTACTTAGAGAAAAAGCGGTTTCGTTTTCCTAACTTTGGAAAACAAATC 2326 Query 2394 AGATGCCATTGTTCCTATCTTGATAGGCACAAGCACATGGTTCTAGCAGATCATGAAGCA 2453 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 2327 AGATGCCATTGTTCCTATCTTGATAGGCACAAGCACATGGTTCTGGCAGATCATGAAGCT 2386 Query 2454 ATGGTGGGTCCAAAACCAGATCCACTCTAAGATCTCTGGAGATACATCAATTAGTCAAAA 2513 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 2387 ATGGTGGGTCCAAAACCAGATCCACTCTTAGATCTCTGGAGATACATCAATTAGTCAAAA 2446 Query 2514 AGTGATACAATTCTGTTACTTCTCCTCAAGATTTATCATCATCTTGTAGAAAAATCTTTG 2573 |||||| ||||||||||||||||| |||||| || | |||||||||||||||||||||| Sbjct 2447 AGTGATTCAATTCTGTTACTTCTCTTCAAGA-TT-T-ATCATCTTGTAGAAAAATCTTTC 2503 Query 2574 AAGAAGTGGTCAGTGGGAGAG-GTTTCAATCGGTTGATGTAGACGCAGGAGATGATAAGG 2632 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 2504 AAGAAGTGGTCAGTGGGAGAGATTTTCAATCGGTTGATGTAGACGCAGGAGATGATAAGG 2563 Query 2633 AACAGATGTTTCTGTTTTTGGCAATTAGTGGCGGTTGGAGATGGTTTTTAGACAGTACGG 2692 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2564 AACAGATGTTTCTGTTTTTGGCAATTAGTGGCGGTTGGAGATGGTTTTTAGACAGTACGG 2623 Query 2693 ATTTGTCTGAAAATTGACAGGCGATTATTGTAGGGTCCAAAACCAAGAGAGGCAAAGTAG 2752 ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 2624 ATTTGTCTGAAAATTGACAGGCGATTATTGTAGGGTCCAAAACCAAGAG-G-CAAAGTAG 2681 Query 2753 TGATCATGTAAAGGAGTGGTTGAAGGAGAAAGATGTTGACGTTACTTCCACAAGAAAGAT 2812 |||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 2682 TGATCATGGAAAGTAGTGGTTGAAGGAGAAAGATGTTGACGTTACTTCCCCAAGAAAGAT 2741 Query 2813 CTTCCAATGCCTTCTCCTAAGATCCTTTTTTCAATTTAGGATTTTGTATT-GATAAATTT 2871 ||||||||||||||||||||||||||||||| || ||||||||| ||| ||| ||||| Sbjct 2742 CTTCCAATGCCTTCTCCTAAGATCCTTTTTT---TT-AGGATTTTG-ATTTGATTAATTT 2796 Query 2872 -CTAACGTAGTGATTATTGATTCGTTGATTATGTGTAATTTGAGTCTCTAACGTGTAGAT 2930 |||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||| Sbjct 2797 TCTAACGTAGTGATTCTTGATTCGTTGATTCTGTGTAGTTTGAGTCTCTAACGTGTAGAT 2856 Query 2931 GAGTTTGTTATATAGCTTTGTTCTAGATTTGATTTCCACTTATTAT-A-A-GAGACAAAT 2987 || ||| ||||||||||||||| ||||||||||| ||||||||||| | | ||||||||| Sbjct 2857 GACTTTATTATATAGCTTTGTTTTAGATTTGATTCCCACTTATTATTATAAGAGACAAAT 2916 Query 2988 CAATAGATTGTAAGAGCTCTCCACCTCAAAGAGAGGCTCCGGAG-ATTTGTAGCTGTAAA 3046 || |||||||||||| |||||||||||||||||||||||||| | ||| |||| |||||| Sbjct 2917 CATTAGATTGTAAGAACTCTCCACCTCAAAGAGAGGCTCCGGGGTATT-GTAGTTGTAAA 2975 Query 3047 TTTTGTACAGAGTAAAACTTGTTT 3070 ||||||| | |||||||||||||| Sbjct 2976 TTTTGTATACAGTAAAACTTGTTT 2999 Score = 134 bits (72), Expect = 5e-30 Identities = 116/134 (87%), Gaps = 16/134 (12%) Strand=Plus/Plus Query 11 TCTATTCCCTCCGGACAATCCCATCTTCTTCTTCTT---CCTTATTGTCTCTTTCTTCAC 67 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1 TCTATTCCCTCCGGACAATCCCATCTTCTTCTTCTTCCCCCTTATTGTCTCTTTCTTCAC 60 Query 68 AGATTTCAATAAAAATCctttgatccttcttctcttctcttttccctttcaataataaaa 127 ||| ||||||||||||| || | | ||||||||||||| | ||| |||||||||| Sbjct 61 AGACTTCAATAAAAATC-TT----C-T-CTTCTCTTCTCTTCT---TTT-AATAATAAAA 109 Query 128 -gtttctctctttt 140 ||| ||||||||| Sbjct 110 AGTT-CTCTCTTTT 122 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 116327608230 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5