BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G53550.1 Length=2496 Score E Sequences producing significant alignments: (Bits) Value Ahg916997 jgi|Araly1|916997|Al_scaffold_0008_1748 3131 0.0 > Ahg916997 jgi|Araly1|916997|Al_scaffold_0008_1748 Length=2028 Score = 3131 bits (1695), Expect = 0.0 Identities = 1923/2034 (95%), Gaps = 12/2034 (1%) Strand=Plus/Plus Query 328 ATGAGGAGTATGATGATGGAGAGAGAGGGAAGGAATGAGATAGAAAGAGAAGTAATAGAT 387 |||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 1 ATGAGGAGCATGATGATGGATAGAGAGGGAAGGAATGAGATAGAGAGAGAAGTAATAGAT 60 Query 388 GACTTGGAAGAGACGCAAAACGAAGGAGATGATTTCAAGTCAATACCTCCATGGAAGGA- 446 ||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||| || Sbjct 61 GACTTGGAAGAGACGCAAAACGAAGCAGATGAATTCAAGTCAATTCCTCCATGGAA-GAG 119 Query 447 ACAAATCACTTTCAGAGGAATTGTTGCAAGTTTAATCATTGGTATAATCTACAGTGTGAT 506 ||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 120 TCAAATTACTGTCAGAGGAATTGTTGCAAGTTTGATCATTGGTATAATCTACAGTGTGAT 179 Query 507 CGTGATGAAACTAAACCTAACAACAGGTTTGGTCCCAAACCTAAATGTCTCTGCAGCACT 566 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 180 TGTGATGAAACTAAACCTAACAACAGGTTTGGTCCCAAACCTAAATGTCTCTGCAGCTCT 239 Query 567 TTTAGCCTTTGTCTTCCTTAGAAGCTGGACCAAGCTG-TTGACCAAAGCCGGGATTGTGA 625 |||||||||||| || ||||||||||||||||||||| || |||||||| || ||||||| Sbjct 240 TTTAGCCTTTGTGTTTCTTAGAAGCTGGACCAAGCTGCTT-ACCAAAGCTGGAATTGTGA 298 Query 626 CTAAACCGTTCACTAAACAAGAGAACACTGTTGTCCAAACATGTGCTGTTGCTTGTTACA 685 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 299 CTAAACCGTTTACTAAACAAGAGAACACTGTTGTCCAAACATGTGCTGTTGCTTGTTACA 358 Query 686 GCATTGCAGTTGGAGGTGGGTTTGGTTCATACCTTCTTGGTTTGAACAGAATTACTTATG 745 ||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||| Sbjct 359 GCATTTCAGTTGGAGGTGGGTTTGGTTCGTACCTTCTTGGTTTGAACAGAAATACTTAT- 417 Query 746 A-ACAGTCAGGAGGAACTCACACTGATGGGAATTATCC-GGAAGGCACGAAAGAGCCTGG 803 | |||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||| Sbjct 418 ATACAGTCAGGAGGAACTCAAACTGATGGGAATTATCCGGGAA-GCACGAAAGAGCCTGG 476 Query 804 AATCGGTTGGATGACCGCTTTCTTGTTCTTTACTTGCTTTGTTGGTCTTTTAGCATTGGT 863 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 477 AATCGGTTGGATGACCGCTTTCTTGTTCTTTACTTGCTTTGTTGGTCTTTTAGCATTGGT 536 Query 864 TCCTCTAAGAAAGATCATGATCATAGACTACAAGCTGACATATCCAAGTGGAACAGCTAC 923 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 537 TCCTCTAAGAAAGATCATGATCATAGACTACAAGCTGACATATCCAAGTGGAACAGCTAC 596 Query 924 CGCGGTTTTGATCAACGGTTTCCACACTCCTAAAGGCAATAAAATGGCCAAGAAACAAGT 983 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 597 TGCGGTTTTGATCAACGGTTTCCACACTCCTAAAGGCAATAAAATGGCCAAGAAACAAGT 656 Query 984 GTTTGGGTTTGTGAAGTACTTCTCATTTAGCTTCATTTGGGCTTTCTTCCAATGGTTCTT 1043 ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 657 GTTAGGCTTTGTGAAGTACTTCTCATTTAGCTTCATTTGGGCTTTCTTCCAATGGTTCTT 716 Query 1044 CTCTGGTGGTACAGAGTGCGGTTTCATTCAGTTTCCAACTTTCGGGTTAGAAGCTTTGAA 1103 ||||||||||||| ||||||| ||||||||||||||||||||||| ||| |||||| || Sbjct 717 CTCTGGTGGTACAAAGTGCGGATTCATTCAGTTTCCAACTTTCGGATTAAAAGCTTGGAC 776 Query 1104 GAACACATTCTACTTCGACTTTAGCATGACATACGTTGGAGCAGGAATGATCTGTCCCCA 1163 |||| | ||||||||||||||||| ||||||||| ||||||||||||||||||||||||| Sbjct 777 GAACTCGTTCTACTTCGACTTTAGTATGACATACATTGGAGCAGGAATGATCTGTCCCCA 836 Query 1164 TATTGTCAA-TATATCTTTGCTTTTTGGCGCGGTTCTGTCTTGGGGAATCATGTGGCCAC 1222 |||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 837 CATTGTCAACT-TATCTTTGCTTTTCGGCGCGGTTCTGTCTTGGGGAATCATGTGGCCAC 895 Query 1223 TCATTAAAGGTCTTAAAGGAGATTGGTTCCCATCAACTCTTCCTGAAAACAGCATGAAGA 1282 ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| Sbjct 896 TCATTAAAGGTCTTAAAGGAGATTGGTTCCCATCAACTCTTTCTGAAAGTAGCATGAAGA 955 Query 1283 GTCTCAATGGTTACAAGGTGTTTATATCAATCTCATTGATCCTCGGAGACGGGCTTTACC 1342 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 956 GTCTCAATGGTTACAAGGTGTTTATATCAATCTCATTGATCCTCGGAGACGGGCTTTACC 1015 Query 1343 AATTCATCAAGATACTTTTTAAGACAGGAATAAACATGTACGTCAAGTTAAACAATCGCA 1402 ||||||||||||||||| ||| |||||||| |||||||||| ||||||||| ||||| Sbjct 1016 AATTCATCAAGATACTTGTTATCACAGGAATCAACATGTACGCCAAGTTAAAGGATCGCC 1075 Query 1403 ACTCTGGGAAATCTAATTCGGAGAAAGATAAGCAATCTATTGCAGATCTTAAAAGAGATG 1462 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1076 ACACTGGGAAATCTAATTCGGAGAAAGATAAGCAATCTATTGCAGATCTTAAAAGAGATG 1135 Query 1463 AGATCTTTGTAAGAGACAGCATTCCATTATGGGTTGCAGCAGTAGGATACGCAGCGTTCT 1522 |||||||||||||||||||| ||||||||||||| |||||||| ||||| |||||||||| Sbjct 1136 AGATCTTTGTAAGAGACAGCTTTCCATTATGGGTGGCAGCAGTCGGATATGCAGCGTTCT 1195 Query 1523 CTGTTGTCTCGATCATCGCGATCCCTATAATGTTCCCCGAGCTGAAATGGTACTTCATAG 1582 ||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||| Sbjct 1196 CTGTTGTCTCGATAATCGCAATCCCTATAATGTTCCCCGAGCTCAAATGGTACTTCATAG 1255 Query 1583 TCGTAGCTTACATGTTAGCTCCATCGTTAGGTTTCAGTAACGCTTATGGAGCAGGGCTAA 1642 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || | Sbjct 1256 TCGTAGCTTACATGTTAGCTCCATCGTTAGGTTTCAGCAACGCTTATGGAGCAGGACTTA 1315 Query 1643 CAGATATGAACATGGCTTATAACTATGGTAAAGTCGCTCTGTTTATCTTAGCCGCTATGG 1702 |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1316 CAGACATGAACATGGCTTATAACTATGGTAAAGTCGCTCTGTTCATCTTAGCCGCTATGG 1375 Query 1703 CAGGGAAACAAAATGGTGTAGTCGCGGGACTTGTCGGATGCGGGTTGATAAAATCGATTG 1762 |||||||| |||| ||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct 1376 CAGGGAAAGAAAACGGTGTCGTCGCGGGACTTGTTGGATGCGGGTTGATAAAATCGATTG 1435 Query 1763 TATCGATTTCTTCTGACCTAATGCACGATTTCAAGACAGGACATTTGACTCTGACTTCAC 1822 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1436 TCTCGATTTCTTCTGACCTAATGCACGATTTCAAGACAGGACATTTGACTCTGACTTCGC 1495 Query 1823 CTAGGTCGATGCTTGTGAGTCAAGCGATCGGTACAGCGATCGGATGCGTTGTGGCGCCTC 1882 | ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 1496 CGAGGTCGATGCTTGTGAGTCAAGCAATCGGTACAGCGATCGGATGCGTTGTGGCTCCTC 1555 Query 1883 TAACTTTCTTCTTGTTTTATAAAGCTTTCGATGTCGGGAACCAGGAGGGAGAGTACAAAG 1942 | ||||||||||||||||| ||||||||||||||||| |||| | |||||||| |||| Sbjct 1556 TCACTTTCTTCTTGTTTTACAAAGCTTTCGATGTCGGAAACCCTGCCGGAGAGTATAAAG 1615 Query 1943 CTCCTTACGCTTTGGTATACAGAAACATGGCAATTCTTGGAGTTGAAGGTTTCTCTGCTT 2002 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1616 CTCCTTACGCTTTGGTATACAGAAACATGGCGATTCTTGGAGTTGAAGGTTTCTCTGCTT 1675 Query 2003 TGCCTCAACATTGTTTACAGCTTTGTTACGGGTTTTTCGCATTCGCGGTGGCGGCAAATC 2062 |||||||||||||| | ||||||||||||||||||||||||||||||||||| || |||| Sbjct 1676 TGCCTCAACATTGTCTCCAGCTTTGTTACGGGTTTTTCGCATTCGCGGTGGCAGCGAATC 1735 Query 2063 TCGTTAGGGATAGGTTACCGGATAAGATAGGGAATTGGGTTCCATTACCGATGGCAATGG 2122 | ||||||||| ||| ||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 1736 TTGTTAGGGATTGGTCGCCGGAGAAGATAGGGAAGTGGGTTCCATTACCGATGGCAATGG 1795 Query 2123 CGGTTCCGTTTCTTGTTGGAGGGTACTTTGCTATTGATATGTGTGT-GGGAAGTTTGATT 2181 |||||||||||||||| ||||||||||| || |||||||||||||| |||| |||||||| Sbjct 1796 CGGTTCCGTTTCTTGTCGGAGGGTACTTCGCCATTGATATGTGTGTTGGGA-GTTTGATT 1854 Query 2182 GTGTTTGCTTGGAATATGAGAGATCGAGTTAAAGCCGGTTTAATGGTACCGGCGGTTGCT 2241 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1855 GTGTTTGCTTGGAATATGAGAGATCGGGTTAAAGCCGGTTTAATGGTACCGGCGGTTGCT 1914 Query 2242 TCCGGTTTGATATGTGGAGATGGTCTATGGATTTTGCCGTCGTCGGTTCTTGCTTTGGCC 2301 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1915 TCCGGTTTGATATGTGGAGATGGTCTTTGGATTTTGCCGTCGTCGGTTCTTGCTTTGGCC 1974 Query 2302 GGCGTTAGACCTCCTATATGTATGGGCTTCATGCCGAGTAAATATTCGAGTTAA 2355 || |||| |||||| || |||||| |||||||||||||||||||||||||||| Sbjct 1975 GGAGTTAAACCTCCGATCTGTATGAACTTCATGCCGAGTAAATATTCGAGTTAA 2028 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 94082905150 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5