BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G53560.1

Length=739
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg357601 jgi|Araly1|357601|fgenesh1_pg.C_scaffold_8001388           654    0.0  


> Ahg357601 jgi|Araly1|357601|fgenesh1_pg.C_scaffold_8001388
Length=405

 Score =  654 bits (354),  Expect = 0.0
 Identities = 388/405 (96%), Gaps = 0/405 (0%)
 Strand=Plus/Plus

Query  110  ATGTCTTCAGATCGGAAGGTTCTAAGTTTTGAAGAAGTTTCAAAGCACAACAAAACTAAG  169
            ||| |||||||||| || ||| ||| ||| |||||||||||| |||||||||||||||||
Sbjct  1    ATGGCTTCAGATCGAAAAGTTTTAACTTTCGAAGAAGTTTCACAGCACAACAAAACTAAG  60

Query  170  GATTGTTGGCTTATTATTTCCGGCAAGGTGTATGATGTGACTCCATTCATGGATGATCAT  229
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  61   GATTGTTGGCTTATTATTTCCGGCAAGGTGTATGATGTGACTCCATTCATGGATGATCAC  120

Query  230  CCTGGAGGCGATGAAGTCTTGTTGTCCTCAACAGGGAAAGATGCTACAAATGATTTTGAA  289
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  CCTGGAGGCGATGAAGTCTTGTTGTCCTCAACAGGGAAAGATGCTACAAATGATTTTGAA  180

Query  290  GACGTTGGTCACAGCGACACTGCAAGGGACATGATGGACAAATATTTCATTGGTGAGATT  349
            ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct  181  GACGTTGGTCACAGCGACACTGCTAGGGACATGATGGATAAATATTTCATTGGTGAGATT  240

Query  350  GATTCGTCTAGTGTTCCAGCAACTAGGACATACGTTGCACCACAGCAACCAGCCTACAAC  409
            ||||||||||||||||||||||| |||||||| |||||||| ||||||||||| ||||||
Sbjct  241  GATTCGTCTAGTGTTCCAGCAACAAGGACATATGTTGCACCGCAGCAACCAGCGTACAAC  300

Query  410  CAAGACAAGACACCAGAATTCATTATCAAGATTCTTCAGTTCCTTGTTCCGATCTTGATC  469
            |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  301  CAAGACAAGACACCGGAATTCATCATCAAGATTCTTCAGTTCCTTGTTCCGATCTTGATC  360

Query  470  TTGGGATTGGCTCTTGTCGTCCGTCACTATACCAAGAAAGACTAG  514
            |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  361  TTGGGACTGGCTCTTGTCGTCCGTCACTATACCAAGAAAGACTAG  405



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27219762738


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5