BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G53560.1 Length=739 Score E Sequences producing significant alignments: (Bits) Value Ahg357601 jgi|Araly1|357601|fgenesh1_pg.C_scaffold_8001388 654 0.0 > Ahg357601 jgi|Araly1|357601|fgenesh1_pg.C_scaffold_8001388 Length=405 Score = 654 bits (354), Expect = 0.0 Identities = 388/405 (96%), Gaps = 0/405 (0%) Strand=Plus/Plus Query 110 ATGTCTTCAGATCGGAAGGTTCTAAGTTTTGAAGAAGTTTCAAAGCACAACAAAACTAAG 169 ||| |||||||||| || ||| ||| ||| |||||||||||| ||||||||||||||||| Sbjct 1 ATGGCTTCAGATCGAAAAGTTTTAACTTTCGAAGAAGTTTCACAGCACAACAAAACTAAG 60 Query 170 GATTGTTGGCTTATTATTTCCGGCAAGGTGTATGATGTGACTCCATTCATGGATGATCAT 229 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GATTGTTGGCTTATTATTTCCGGCAAGGTGTATGATGTGACTCCATTCATGGATGATCAC 120 Query 230 CCTGGAGGCGATGAAGTCTTGTTGTCCTCAACAGGGAAAGATGCTACAAATGATTTTGAA 289 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CCTGGAGGCGATGAAGTCTTGTTGTCCTCAACAGGGAAAGATGCTACAAATGATTTTGAA 180 Query 290 GACGTTGGTCACAGCGACACTGCAAGGGACATGATGGACAAATATTTCATTGGTGAGATT 349 ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 181 GACGTTGGTCACAGCGACACTGCTAGGGACATGATGGATAAATATTTCATTGGTGAGATT 240 Query 350 GATTCGTCTAGTGTTCCAGCAACTAGGACATACGTTGCACCACAGCAACCAGCCTACAAC 409 ||||||||||||||||||||||| |||||||| |||||||| ||||||||||| |||||| Sbjct 241 GATTCGTCTAGTGTTCCAGCAACAAGGACATATGTTGCACCGCAGCAACCAGCGTACAAC 300 Query 410 CAAGACAAGACACCAGAATTCATTATCAAGATTCTTCAGTTCCTTGTTCCGATCTTGATC 469 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 301 CAAGACAAGACACCGGAATTCATCATCAAGATTCTTCAGTTCCTTGTTCCGATCTTGATC 360 Query 470 TTGGGATTGGCTCTTGTCGTCCGTCACTATACCAAGAAAGACTAG 514 |||||| |||||||||||||||||||||||||||||||||||||| Sbjct 361 TTGGGACTGGCTCTTGTCGTCCGTCACTATACCAAGAAAGACTAG 405 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27219762738 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5