BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53570.2
Length=2250
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495433 jgi|Araly1|495433|fgenesh2_kg.8__1249__AT5G53570.1 2852 0.0
> Ahg495433 jgi|Araly1|495433|fgenesh2_kg.8__1249__AT5G53570.1
Length=2298
Score = 2852 bits (1544), Expect = 0.0
Identities = 1850/1993 (93%), Gaps = 40/1993 (2%)
Strand=Plus/Plus
Query 257 GAATCAGATGAAGGCGTTACGGAGAAGCTATActtcaacgtcttctgggaattca----- 311
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 330 GAATCAGATGAAGGCGTTACGGAGAAGCTATACTTCAACGTCTTCTGGGAATTCATCTTC 389
Query 312 -tcttcttcgtcttcgttaccttcttcgtcttcttcttcgttaccatcttcttcttcttc 370
|||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 390 TTCTTCTTCTTCTTCGTTACCTTCTTCTTCGTCTTCTTCGTTACCATCTTCTTCTTCTTC 449
Query 371 ttcacctccttcttctaattctaa---ttcttattcgaattctaattcttcttcg---tc 424
|||||||||| ||||||||||||| ||||| ||||||||| |||||||||| ||
Sbjct 450 TTCACCTCCTCCTTCTAATTCTAATTCTTCTTCTTCGAATTC---TTCTTCTTCGAATTC 506
Query 425 ttcgtcgtcgtGGATCCATCTACGGTCGGTTCTCTTTGTGGCTAATCTTTCGTCTCCGTC 484
||| ||||||||||| ||||| || || |||||||||||||| |||||||||||||| ||
Sbjct 507 TTCTTCGTCGTGGATACATCTTCGTTCTGTTCTCTTTGTGGCGAATCTTTCGTCTCCATC 566
Query 485 TTCAGTTACTTCTTCCGATCGCCGGCGGAAATCACCGTGGTCTCGCCGGAAAAGAAAATG 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 567 TTCAGTTACTTCTTCCGATCGCCGGCGGAAATCACCGTGGTCTCGCCGGAAAAGAAAATG 626
Query 545 GGCATTGACGCCACATCAATGGAGGAGTTTATTTACACCGGAGGGAAAACTCCGTGATGG 604
|||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 627 GGCATTGACGCCGCATCAATGGAGGAGTTTGTTTACACCGGAGGGTAAACTCCGTGATGG 686
Query 605 TGGAGTTGGATTCCTGAAGAAAGTTAGAAGCAGAGGTGTTGATCCAAGTATTCGTGCAGA 664
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 687 TGGAGTTGGATTTCTGAAGAAAGTTAGAAGCAGAGGTGTTGATCCAAGTATTCGTGCAGA 746
Query 665 AGTGTGGCTGTTCTTACTCGGAGTTTATGATTTGAATAGTACTAGTGAAGAAAGAGAAGC 724
||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 747 AGTGTGGCTGTTCTTGCTCGGAGTCTATGATTTGAACAGTACTAGTGAAGAAAGAGAAGC 806
Query 725 AGTGAAAACTCAAAAAAGGAAGGAGTATGAGAAACTACAGAGACGATGTCAGATGCTTCT 784
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 807 AGTTAAAACTCAAAAAAGGAAGGAGTATGAGAAACTACAGAGACGATGCCAGATGCTTCT 866
Query 785 CAAGTGCGGTAAT-GGAAGTACCGATAATCTTGAGGAGCTTCCATCTGATGAGGCAAACA 843
|||||||| ||| |||| ||| ||||||||||||| ||||| || || |||||||||
Sbjct 867 AAAGTGCGGCAATGGGAA-TACTAATAATCTTGAGGAACTTCCTTCGGACGAGGCAAACG 925
Query 844 GTCAATGTGTTCGGTTCGTGGATGATTATAAGATTACAGGACCAATGACAAGTCAAGATG 903
||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||
Sbjct 926 GTCAATGTGTTCGGTTCGTGGATGATTATAAGATTACGGGATCAATGACAAATCAAGATG 985
Query 904 TTGTTTCTGCTTTGAACACTGATTCTTCTGATACAGACTCTTGTGAAGATAATGAAGATG 963
| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 986 TGGTCTCTGCTGTGAACACTGATTCTTCTGATACAGACTCTTGTGAAGATAATGAAGATG 1045
Query 964 TTTTACTACTCTCATCTTTTGCACACAGCGATG-aaaaaaaGCCGGAGGAGGATAATAGT 1022
|| |||||||||||||||||| | ||||||||| |||||| || |||||||||||||||
Sbjct 1046 TTCTACTACTCTCATCTTTTGTATACAGCGATGCGAAAAAA-CCTGAGGAGGATAATAGT 1104
Query 1023 AATAACAATTCTGAAGAGAATAGTTCTCTTCTTGTAGCTGCTGCTTCTGAGGTCCAAGTA 1082
||||||||||||||||||| |||||||| ||||||| | ||||| ||||| ||
Sbjct 1105 AATAACAATTCTGAAGAGAGTAGTTCTCCTCTTGTA------G---CTGAGATCCAAATA 1155
Query 1083 GAAGTTGCGGTACACGAAGATTTCTCTACGTGGCAACGTATCATCCGGCTTGATGCTTTA 1142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1156 GAAGTTGCGGTACACGAAGATTTCTCTACGTGGCAACGTATCATCCGGCTTGATGCTTTA 1215
Query 1143 CGAGCGGATTCTGAATGGGCAA-ATTATTCTCCATATTCAACAGCAATCACAGAAAGCAA 1201
|| ||||||||||| ||||||| | ||||||||||||||||| |||||||| ||||||||
Sbjct 1216 CGTGCGGATTCTGAGTGGGCAACA-TATTCTCCATATTCAACTGCAATCACTGAAAGCAA 1274
Query 1202 AGCTCGCAGG-TTAGCCGAATCTGTCGGGTTAAAAGACTATGATCACTTAGAAAGCTGCA 1260
|||||| || ||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1275 AGCTCG-TGGTTTAGCTGAGTCTGTCGGGTTAAAAGACTATGATCACTTAGAAAGCTGCA 1333
Query 1261 GGCTATACCACGCAGCACGGTTAGTTGCAATTCTTGAAGCTTATGCTATGTATGATCCTG 1320
|||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1334 GGCTTTACCACGCTGCACGACTAGTTGCAATTCTTGAAGCTTATGCTATGTATGATCCTG 1393
Query 1321 AGATAGGCTACTGTCAAGGAATGAGTGATCTGTTATCTCCAATCCTCGCTGTGATCTCAG 1380
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1394 AGATAGGCTACTGCCAAGGAATGAGTGATCTGTTATCTCCTATCCTCGCTGTGATCTCAG 1453
Query 1381 AGGATCACGAGGCTTTCTGGTGCTTTGTTGGTTTCATGAAGAAAGCTCGGCACAATTTCA 1440
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1454 AGGATCACGAGGCTTTCTGGTGCTTTGTTGGTTTTATGAAGAAAGCTCGGCATAATTTCA 1513
Query 1441 GGCTTGACGAAGCAGGGATTCAAAGACAGCTAAGCATTGTATCAAAGATCATAAAAAATA 1500
|||| || ||||||||||||||||| |||||||| ||||| ||||||||||||||||| |
Sbjct 1514 GGCTCGATGAAGCAGGGATTCAAAGGCAGCTAAGTATTGTTTCAAAGATCATAAAAAACA 1573
Query 1501 AAGACTCTCAGCTTTATAAACACTTGGAGAATCTTCAAGCAGAAGATTGTAGTTTCGTTT 1560
||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1574 AAGACTCTCAGCTCTATAAACACTTGGAGAATCTTCAAGCCGAGGATTGTAGTTTCGTTT 1633
Query 1561 ACAGGATGGTGCTTGTTATGTTTAGGAGGGAGTTGAGTTTTGAACAGACGCTGTGTCTCT 1620
||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1634 ACAGGATGGTGCTCGTTATGTTTAGGAGGGAGTTGAGTTTTGAACAGACACTTTGTCTCT 1693
Query 1621 GGGAAGTGATGTGGGCTGATCAAGCTGCCATTAGAGCTGGAGTTGGGAAGTCGCCATGGA 1680
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1694 GGGAAGTGATGTGGGCTGATCAAGCCGCCATTAGAGCTGGAGTTGGGAAATCGCCATGGA 1753
Query 1681 GCAGAATCCGGCAACAAGCACCGCCAACGGATGATTTGTTGCTCTATGCAATCGCGGCGT 1740
|||||||||||||||||||||| ||||| |||||| |||||||||| |||||||||||
Sbjct 1754 GCAGAATCCGGCAACAAGCACCACCAACAGATGATCTGTTGCTCTACGCAATCGCGGCAC 1813
Query 1741 TAGTACTACGTAGGAAACTGATCATACAGAAATACAGTAGTATGGATGAGATTGTGGAAG 1800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1814 TAGTACTACGTAGGAAACTGATCATACAGAAATACAGTAGTATGGATGAGATTGTGGAAG 1873
Query 1801 AGTGTAATAGCATGGCTGGTCAGCTTAATGTCTGGAAGCTTCTTGATGATGCCCATCATC 1860
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1874 AGTGTAATAGCATGGCTGGTCAGCTTAATGTCTGGAAGCTTCTAGATGATGCGCATCATC 1933
Query 1861 TTGTCGTGACGCTTCACGACAAGATTGAAACTCTTTCTCAATCACAGAGTATTTGATGAA 1920
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1934 TTGTCGTGACGCTTCACGACAAGATTGAAACTCTTTCTCAATCACACAGTATTTGATGAA 1993
Query 1921 GAAGTCGATCAAAGCCAGAAATGAAGTGTTTCCACTACACAAAAGCCCTTGCACTCGTCT 1980
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1994 GAAGTCGATTAAAGCCAGAAATGAAGTGTTTCCACTACACAATC-CCCTTGCACTCGTCT 2052
Query 1981 GGCTGCGTTTTCTCAAGGTTTAAAgtttgttgcggtttggttcttaccgttttcactcct 2040
||||||||||| ||||||||| |||||||| |||||||||||||||| | ||||||||||
Sbjct 2053 GGCTGCGTTTTGTCAAGGTTTTAAGTTTGTCGCGGTTTGGTTCTTACTGATTTCACTCCT 2112
Query 2041 ctctttctttcttctttctttttgtttACTCATCACACAGAGAAAACACAATACTACTAT 2100
|||| ||| ||||||||||||||||| ||| ||||||||||||| |||||||||| |
Sbjct 2113 CTCT--CTT-CTTCTTTCTTTTTGTTTCCTCGTCACACAGAGAAA-CACAATACTA-T-- 2165
Query 2101 CCTTATCGCTTTTATTGTAGTACTAATGAAAAAGACAAGGCAATATTCTTGTTAAAATGT 2160
||| ||| |||||||||||||||||||||||||||||| |||||||| |||| ||||||
Sbjct 2166 CCTCATCACTTTTATTGTAGTACTAATGAAAAAGACAAAACAATATTCCTGTTGAAATGT 2225
Query 2161 AACGGATGAGTCTGAAACTGTCATTTCCACAATTGTATGAAACATATTTGTTCAATTGTA 2220
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 2226 GACGGATGAGTCTGAAACTGTCATTTCCACAACTGTATGAATCATATTTGTTCAATTGTA 2285
Query 2221 GAAATCCAGTTTC 2233
|||| ||||||||
Sbjct 2286 GAAACCCAGTTTC 2298
Score = 198 bits (107), Expect = 1e-49
Identities = 206/248 (83%), Gaps = 29/248 (12%)
Strand=Plus/Plus
Query 12 AGAGAGGCTTCAGTTGTTGGATGcttttgctttttttccttcttcttcgtcttctttctt 71
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1 AGAGAGGCTTCAGTTGTTGGATGCTTTTGCTTTTTTTCCTTCTTCTTCATCTTC-TTCTT 59
Query 72 cgtctctc--ttctttttttcagtttcGGCGTGCTGAAGAAGACGATAGAGTAATCAATC 129
|||||||| || |||||||||||||||||||||| |||||||||||| || | ||||||
Sbjct 60 CGTCTCTCTTTTTTTTTTTTCAGTTTCGGCGTGCTAAAGAAGACGATA-AG-AGTCAATC 117
Query 130 ACAGTGAGAGAGATTTGAGGGTAAATCTGTCCTTTTCTTTTCTTAAACAACTCATGCTTG 189
| | | | || | | | |||| |||||||||||| ||||||||||
Sbjct 118 A-A-T--CACAG---T----G---A-------TTTT-TTTTCTTAAACATCTCATGCTTG 155
Query 190 ATTTCTGCTACGGCGGAGGAGGAGGAGGAAGAGGTTTACTTTTGCTTATCACCGGGAAAT 249
|||||||||||||||||||||||||| || |||||||||||| | ||||||||| ||
Sbjct 156 ATTTCTGCTACGGCGGAGGAGGAGGAAGAGGAGGTTTACTTTA-CA-ATCACCGGGGAAG 213
Query 250 TTCCGGCG 257
||||||||
Sbjct 214 TTCCGGCG 221
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84712704880
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5