BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53588.1
Length=984
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495435 jgi|Araly1|495435|fgenesh2_kg.8__1251__AT5G53588.1 1236 0.0
> Ahg495435 jgi|Araly1|495435|fgenesh2_kg.8__1251__AT5G53588.1
Length=944
Score = 1236 bits (669), Expect = 0.0
Identities = 865/952 (91%), Gaps = 43/952 (5%)
Strand=Plus/Plus
Query 38 CTCTTCATGCTTAGCCTATCATGAGCAACATCCCTAGATCTCTCACCGACTCAGATCTTT 97
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 27 CTCTTCATGCTTAGCCTATCATGAGCAACATCCCTAGATCTCTCACCGACTCAGATCTTT 86
Query 98 CTCTATTTAC-TCTCATAATCTCTTCTGCTGTTGATCCTTGGCCTTTTTCTATCACCGTT 156
|||| || | |||||| || ||||||||||||||||||||||||||||||||||| |||
Sbjct 87 CTCT-CTTCCTTCTCATTATATCTTCTGCTGTTGATCCTTGGCCTTTTTCTATCACTGTT 145
Query 157 TTTTAGCATCAACAAAACTCACCGGAAAATCTCTAACAACCACCACCGTTTAACACTTCT 216
||||||||||||| || ||||||||||||||||||| || |||||| ||||||||||||
Sbjct 146 TTTTAGCATCAAC-AACCTCACCGGAAAATCTCTAA-AA--ACCACCTTTTAACACTTCT 201
Query 217 CTTCCTCCTCGTCGATCGTTTTTAAACCAATC-TT-TGTGTTTCTTGTTTGGTTTTTCGG 274
|||||||||||||||||| |||| |||||||| || ||||||||||||||||||||||||
Sbjct 202 CTTCCTCCTCGTCGATCG-TTTT-AACCAATCTTTGTGTGTTTCTTGTTTGGTTTTTCGG 259
Query 275 TG-AAAAAGATTCCTTCTTCTTAATGGGTTTTGAAGAAAACCAAAAACAGAGTCCAAAAC 333
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 260 TGAAAAAAGATTCCTTCTTCTTAATGGGTTTTGAAGAAAACCAAAAACAGAGTCCAAAAC 319
Query 334 AGAGTCCGAATCATATCAAGCATATGGTGTTCAAGTTCCACTTCCATGTTCCTCATCTCC 393
||||||||||||| |||||||||||||||||||| || ||||| ||||||||||||||||
Sbjct 320 AGAGTCCGAATCAGATCAAGCATATGGTGTTCAACTTTCACTTTCATGTTCCTCATCTCC 379
Query 394 ACATACTCCCTCATCATcaccaccaccaccaccaTGATGTTCCTAAAGGCTGTGTAGCGA 453
||||||||| |||||||||||| || || || ||||||||||||||||||||||||||
Sbjct 380 ACATACTCCATCATCATCACCATCATCATCA---TGATGTTCCTAAAGGCTGTGTAGCGA 436
Query 454 TTATGGTGGGACACGAAGACGATGAAGAAGGTCTACATAGATTTGTTGTTCCGTTGGTGT 513
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 437 TTATGGTGGGACATGAAGACGATGAAGAAGGTCTACACAGATTTGTTGTTCCGTTGGTGT 496
Query 514 TCTTGAGCCATCCTTTGTTCTTGGATCTCTTGAAAGAAGCTGAAAAAGAGTATGGATTCA 573
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 497 TCTTGAGTCATCCTTTGTTCTTGGATCTCTTGAAAGAAGCTGAAAAAGAGTATGGATTCA 556
Query 574 AGCATGATGGTCCGATTACGATTCCTTGCGGTGTTGATGAGTTTAAGCATGTTCAAGAAG 633
|||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 557 AGCACGATGGTCCGATTACTATTCCTTGCTGTGTTGATGAGTTTAAGCATGTTCAAGAAA 616
Query 634 TTATCGACGAGGAGACTCATCGCCGTCATAGTCACGGTGGTCACGGCCACAACAACCATA 693
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 617 TTATCGACGAGGAGACTCATCGCCGTCATAGTCACGGTGGTCACAGCCACAACAACCATA 676
Query 694 ACCATCACAACAACCATTTGCGATGTTTCTAAAGATCTATAATTCGATTTGTTGGTTTG- 752
|||| |||||||||||| | || ||||| ||||||||| ||||||||||||||||||||
Sbjct 677 ACCACCACAACAACCATCTACGTTGTTTTTAAAGATCTCTAATTCGATTTGTTGGTTTGC 736
Query 753 ---G-TTTGGTTTGAGATGTCATTGGTTTGATTTGACAGATTTCTCTTTTGAGATTGATT 808
| |||||||||| |||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 737 TCTGGTTTGGTTTGACATGTAATTGGTTTGATTTGACAGATTTCTCTTTTGAGATTGTTT 796
Query 809 AGTTTGCTTAACTTTTTGCTTTTAGTTAGTTtgatgatgatgataaattgataatgatga 868
||||||||||| ||||| ||| | | | ||||||||| | | | ||| || |
Sbjct 797 AGTTTGCTTAA-TTTTT--TTT--G--A-T--GATGATGAT-A-A--T-GAT---GA--A 836
Query 869 aaaaatcaaaagagcaattgaatgtgattttttttttttttttttAAATGTAATCGTGAG 928
|||| |||| ||||| ||| ||||||| | ||||||||| || ||||||||||||
Sbjct 837 AAAA-TCAAGAGAGCCATTAAATGTGAATGCTTTTTTTTTAAG--AA-TGTAATCGTGAG 892
Query 929 GAATAAGGGAAGAATCATATTATTTGATTTTTATTTTATGGAAAGGAATGTG 980
|||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 893 AAATAAGGGAATAATCATATTATTTGATTTTTATTTTATTGAAAGGAATGTG 944
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36559877403
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5