BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53620.1
Length=2390
Score E
Sequences producing significant alignments: (Bits) Value
Ahg357610 jgi|Araly1|357610|fgenesh1_pg.C_scaffold_8001397 2898 0.0
Ahg357624 jgi|Araly1|357624|fgenesh1_pg.C_scaffold_8001411 407 2e-112
> Ahg357610 jgi|Araly1|357610|fgenesh1_pg.C_scaffold_8001397
Length=2076
Score = 2898 bits (1569), Expect = 0.0
Identities = 1779/1876 (95%), Gaps = 31/1876 (2%)
Strand=Plus/Plus
Query 348 AGAATGGAAGAGAACAGGATGGTTATTCAAATAGTGAGATGTTGCAGCAACAGATTCTTA 407
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 230 AGAATGGAAGAGAGCAGGATGGTTATTCAAATAGTGAGATGTTGCAGCAACAGATTCTTA 289
Query 408 ATGTTTCTAGAAAGAAAGGAGAA-TTACAGCAGTTGGAGATTGAGCTTCGAGCTCAGATG 466
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 290 ATGTTTCTAGAAAGAAAGGAGAACTT-CAGCAGTTGGAGATTGAGCTTCGAGCTCAGATG 348
Query 467 ATTGCGAGACATGAGATCATGGAGATCCAGAGCAACTATGAATCTCAATTCACAGAGTAT 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 ATTGCGAGACATGAGATCATGGAGATCCAGAGCAACTATGAATCTCAATTCACAGAGTAT 408
Query 527 GCTAATGCTGCTGCTAGAATGCAGGAGCAACTTCATGAGAATGAGAGATCTATTCGGGAG 586
||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 409 GCTAATGCTTCTGCTAGAATGCAGGAGCAACTTCATGAGAAGGAGAGATCTATTCGGGAA 468
Query 587 GCAGAGAGGAAGTTAGAAGAGAAAGACAGAGAGCTACATGCGATTAAACTAGATAATGAA 646
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 469 GCAGAGAGGAAGTTAGAAGAGAAAGACAGAGAGCTACATGCGATTAAACTGGATAATGAA 528
Query 647 GCGGCTTGGGCCAAAGAGGGTATCCTAAGAGAACAAAATAAAGAACTTGCCACATTCAGA 706
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 GCGGCCTGGGCCAAAGAGGGTATCCTAAGAGAACAAAATAAAGAACTTGCCACATTCAGA 588
Query 707 AGAGAGCGTGATCACTCTGAAGCTGAGAGGTCCCAGAATATACATAAAATATCTGAACTT 766
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 589 AGAGAGCATGATCACTCTGAAGCTGAGAGGTCCCAAAATATACATAAAATATCTGAACTT 648
Query 767 CAGGAGCATATTCAAGAGAAAGAGAGTCAGCTCAGTGAATTGCAGGAACAAAATAGGATT 826
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 649 CAGGAGCATATTCAAGAGAAAGAGAGCCAGCTCAGTGAATTGCAGGAACAAAATAGGATT 708
Query 827 GCTCAAGAAACTATCCTGTACAAGGATGAGCAACTAAGAGAAGCACAAGGTTGGATTGCT 886
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 GCTCAAGAAACTATCTTGTACAAGGATGAGCAACTAAGAGAAGCACAAGGTTGGATTGCC 768
Query 887 CGTGCCCAAGAGATTGATGCTTTACAATCATCTACAAATCATTCGTTGCAGGCTGAATTG 946
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 CGTGCCCAAGAGATGGATGCTTTACAATCATCTACAAATCATTCGTTGCAGGCTGAATTG 828
Query 947 CGAGAACGTACTGAGCAGTATAACCAGCTCTGGCATGGTTGTCAGAGGCAGTTTGCAGAG 1006
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 829 CGAGAACGTACTGAGCAGTATAACCAGCTCTGGCATGGTTGTCAGAGACAGTTTGCAGAG 888
Query 1007 ATGGAGAGATTGCATGTGCACACAGTGCAACAGCTTCAGCAAGAGCTTGCTAATGTAAGG 1066
||||||||||||||| |||| |||||||||||||||||||| |||||||| |||||||||
Sbjct 889 ATGGAGAGATTGCATTTGCATACAGTGCAACAGCTTCAGCATGAGCTTGCCAATGTAAGG 948
Query 1067 GAAGCTGGTGGTTCCAAAACAAACTCCGGTGGAGCCTCCCAGACTATTCAGAACAGCGGG 1126
||||| ||||||||||||||||| ||| | || |||||||||||||||||||||||||||
Sbjct 949 GAAGCAGGTGGTTCCAAAACAAATTCCAGCGGTGCCTCCCAGACTATTCAGAACAGCGGG 1008
Query 1127 AACCAATTTGATGCTCATGGAAACAGCGCAGAAAGTGCAAACATTAGTGTCCATTCAAAT 1186
|||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1009 AACCAATTTGATGCTCATGGAAACAGCGCAGAAAGTGCAAACATTA--G----------T 1056
Query 1187 GGAAAAAGCGCAGATAACATCTCATCTTTTACTTCAACTGATGATAAGGCTACCCAGAAC 1246
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1057 ---------GCAGATAACATCTCATCTTTTACTTCAACTGATGATAAGGCTACCCAGAAC 1107
Query 1247 AACCGTGTTGATGGGATATCAGCTTCCAATCTTGCGACACATGGGTTCCTTCAAGCTGGT 1306
|||||||||||| |||| ||| |||| ||||||| ||| ||||||| ||||||||| |||
Sbjct 1108 AACCGTGTTGATAGGATGTCATCTTCTAATCTTGGGACGCATGGGTACCTTCAAGCGGGT 1167
Query 1307 CAGATGACCCCTCTGCATTCATTTGTCATGCATCAACAAGAGATTTCTCAGCTTGTTCAG 1366
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1168 CAGATGACCCCTCTGCATTCGTTTGTCATGCATCAACAAGAGATTTCTCAGCTTGTTCAG 1227
Query 1367 CCTCAGGTCCCTTCACAACATATTGAACAATCAGTGTTGCTACAGCAAAAGGCTCAGGCT 1426
|||||||||||||||| ||| ||| ||||||||||||||| |||||||||||| | |
Sbjct 1228 CCTCAGGTCCCTTCACCTCATTTTGCACAATCAGTGTTGCTGCAGCAAAAGGCT--G--T 1283
Query 1427 GTACCAGATAGTTCACAGATGCCTATGCAGAATCATGTGCATCCATCTCAAGGTGTTCAT 1486
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1284 --ACCAGATAGTTCACAGATGCCTATGCAGAATCATGTGCATCCATCTCAAGGTGCTCAT 1341
Query 1487 GGCTTGGTACAATCCTTTGGTCAAGGGTACGGAGATATTCAAACTAGCCAAGTAGCACAA 1546
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1342 GGCTTGGTACAGTCCTTTGGTCAAGGGTATGGAGATATTCAAACTAGCCAAGTAGCACAA 1401
Query 1547 TACGGAACTACGACAACACCATCCTCTGTGAATGAACAGGCAGTGGAATCTGGCAATGGA 1606
|| ||| |||||||| || | |||||||||||||||||||||||||||||||||||||||
Sbjct 1402 TATGGAGCTACGACACCATCGTCCTCTGTGAATGAACAGGCAGTGGAATCTGGCAATGGA 1461
Query 1607 GATTATAATGGATCTAATCAGTCAGAGAATAACTTTCAAGACATTTCTTCACAGTTCCGT 1666
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1462 GATTATAATGGATCTCATCAGTCAGAGAATAACTTTCAAGACATTTCTTCACAGTTCCGT 1521
Query 1667 GATGCCCTAAGGCTTGATTCTCATTCCCAGAATCAGAAACCTGAGGAA-CTCAATGGTCA 1725
|||| |||||||||||||| ||| |||| |||||||||||||||||| || ||||||||
Sbjct 1522 GATGTGCTAAGGCTTGATTCCCATACCCATAATCAGAAACCTGAGGAAGCT-AATGGTCA 1580
Query 1726 GGTTTCACCTGATGAACACAGTGGTGCTAAATCCATTGTCCCTGAAACTCTAGTCTCATC 1785
|||||||||||| || |||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 1581 GGTTTCACCTGACGAGCACAATGGTGCTAAATCCATTGTCTCTGAAACTCTAGTCTCATC 1640
Query 1786 CGGAAAACCTGAGAGGAACTCAGAGTGCGCTCTGCTCGATGAAAGGTCGCTTTTGACATG 1845
|| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1641 TGGGAAACCTGAGAGGAACTCAGAGAGTGCTCTGCTCGATGAAAGGTCGCTTTTGACATG 1700
Query 1846 CATCCTCCGTACTATACCAGCTGGTGGGAGAATCAGAATCAGTTCAACGCTTCCAAACCG 1905
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1701 CATCCTCCGTACTATACCAGCTGGTGGAAGAATCAGAATCAGTTCAACGCTTCCAAACCG 1760
Query 1906 TTTGGGCAAAATGCTAGCCCCTCTACACTGGCATGATTACAGGAAAAAGTACGGGAAGCT 1965
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1761 TTTGGGCAAAATGCTAGCCCCTCTGCACTGGCATGATTACAGGAAAAAGTACGGGAAGCT 1820
Query 1966 GGATGATTTTGTTGCTAGCCATCTTGAGTTATTTTCGATAGAGGATGACTACATTCAAGT 2025
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1821 GGACGATTTTGTTGCTAGCCATCTTGAGTTATTTGCGATAGAGGATGACTACATTCAAGT 1880
Query 2026 TAGAGACGGTGCACAGAAAATGGTagcagcatcagcagcagcagccaaagtggcagcagc 2085
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1881 TAGAGACGGTGCACAGAAAATGGTAGCAGCTTCAGCAGCAGCAGCCAAAGTGGCAGCAGC 1940
Query 2086 agctgcagcTTCGTCATCCCCAAACTCCATCTATGTGGCTATGACTCCTATGGCTCAGTC 2145
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1941 AGCTGCAGCGTCGTCATCCCCAAACTCCATCTATGTGGCTATGACTCCTATGGCTCAGTC 2000
Query 2146 TCAAGGGTTAAAGAAGAATGACAACAGAGTTAGGCAGAGCTCTGATTTTATGGTGAAGCA 2205
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2001 CCAAGGGTTAAAGAAGAATGACAACAGAGGTAGGCAGAGCTCTGATTTTATGGTGAAGCA 2060
Query 2206 GCAAAGAAAGCTCTGA 2221
||||||||||||||||
Sbjct 2061 GCAAAGAAAGCTCTGA 2076
Score = 270 bits (146), Expect = 3e-71
Identities = 161/168 (96%), Gaps = 2/168 (1%)
Strand=Plus/Plus
Query 183 CCGCTTCGAGCGTAGCTACAACTCGTGGCGGTTCCCTTCAGAATCCGTCGCCGACGGCTC 242
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 8 CCGCTTCGAGCGTAGCTGCAACTCGTGGCGGTTCCCTTCAGAATCCGTCGCCGACGGCTA 67
Query 243 CGTCAAGAAAAGAGTGGCGCGCCGTTTCGGATTCACAAGACACCACAGATTATGTGGATT 302
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 68 CGTCAAGAAAAGAATGGCGCGCCGTTTCGGATTCACAAGACACTACAGATTATGTGGATT 127
Query 303 TGGAACAGTTAAAGCTGAA-CAGGACAGATGAGAGAACGATTTATGAG 349
|||||||||||||||| || | ||||||||||||||||||||||||||
Sbjct 128 TGGAACAGTTAAAGCTAAATC-GGACAGATGAGAGAACGATTTATGAG 174
> Ahg357624 jgi|Araly1|357624|fgenesh1_pg.C_scaffold_8001411
Length=1416
Score = 407 bits (220), Expect = 2e-112
Identities = 315/361 (87%), Gaps = 6/361 (2%)
Strand=Plus/Plus
Query 1535 CAAGTAGCACAATACGGAACTACGACAACACCATCCTCTGTGAATGAACAGGCAGTGGAA 1594
|||| ||||||||| ||| || | | | | |||||||||||||||||||||||||| ||
Sbjct 850 CAAGGAGCACAATATGGATCTTCTATACCGGCATCCTCTGTGAATGAACAGGCAGTGAAA 909
Query 1595 TCTGGCAATGGAGATTATAATGGATCTAATCA-GTCAGAGAATAACTTTCAAGACATTTC 1653
|||||||||||||||||| |||| | | ||| | |||||||||||||||||||||||||
Sbjct 910 TCTGGCAATGGAGATTATCTTGGACCCATTCACG-CAGAGAATAACTTTCAAGACATTTC 968
Query 1654 TTCACAGTTCCGTGATGCCCTAAGGCTTGATTCTCATTCCCAGAA-TCAGAAACCTGAGG 1712
|||||||||||||||||| |||||| | || || || | || || |||||| |||||||
Sbjct 969 TTCACAGTTCCGTGATGCGCTAAGGATAGACTC-CAATGCCTTAAATCAGAAGCCTGAGG 1027
Query 1713 A-ACTCAATGGTCAGGTTTCACCTGATGAACACAGTGGTGCTAAATCCATTGTCCCTGAA 1771
| ||| ||||||||||||||| ||| |||||| | ||||||| ||||||||| ||||||
Sbjct 1028 AGACT-AATGGTCAGGTTTCAGCTGGTGAACATAATGGTGCTGGATCCATTGTGCCTGAA 1086
Query 1772 ACTCTAGTCTCATCCGGAAAACCTGAGAGGAACTCAGAGTGCGCTCTGCTCGATGAAAGG 1831
||||||||||||||||| ||| |||||||||||| |||| | ||||| || |||||||||
Sbjct 1087 ACTCTAGTCTCATCCGGGAAAGCTGAGAGGAACTTAGAGAGTGCTCTTCTTGATGAAAGG 1146
Query 1832 TCGCTTTTGACATGCATCCTCCGTACTATACCAGCTGGTGGGAGAATCAGAATCAGTTCA 1891
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 1147 TCGCTTTTGACATGCATCCTCTGTACTATACCAGCTGGTGGAAGAATCAGAATCAGTTCA 1206
Query 1892 A 1892
|
Sbjct 1207 A 1207
Score = 359 bits (194), Expect = 6e-98
Identities = 325/384 (85%), Gaps = 25/384 (7%)
Strand=Plus/Plus
Query 1111 TATTCAGAACAGCGGGAACCAATTTGATGCTCATGGAAACAGCGCAGAAAGTGCAAACAT 1170
||| |||||||| |||||||||||||| |||||||||||||| | |||||||||||| |
Sbjct 414 TATCCAGAACAGTGGGAACCAATTTGAGGCTCATGGAAACAGTTCGGAAAGTGCAAACGT 473
Query 1171 TAGTGTCCATTCAAATGGAAAAAGCGCAGATAACATCTCATCTTTTACTTCAACTGATGA 1230
|| |||||||||||||||||||| ||||||||| || |||||||||||||||| ||||||
Sbjct 474 TAATGTCCATTCAAATGGAAAAAACGCAGATAATATATCATCTTTTACTTCAAGTGATGA 533
Query 1231 TAAGGCTACCCAGAACAACCGTGTTGATGGGATATCAGCTTC-CAATCTTGCGACACATG 1289
|| ||||||||||| |||||||||||||| | |||||||||| | |||||| || ||||
Sbjct 534 TAGGGCTACCCAGACCAACCGTGTTGATGTG-TATCAGCTTCTC-ATCTTG-GATGCATG 590
Query 1290 GGTTCCT-TCAAGCTGGTCAGATGACCCCTCTGCATTCATTTGTCATGCATCAACAAGAG 1348
||| | | |||||| ||||| ||||| |||||||| || ||| |||||||||||||||||
Sbjct 591 GGTACTTCTCAAGC-GGTCAAATGACTCCTCTGCACTCTTTTATCATGCATCAACAAGAG 649
Query 1349 ATTTCTCAGCTTGTTCAGCCTCAGGTCCCTTCACAACATATTGAACAATCAGTGTTGCTA 1408
||| |||||||||||||| |||||| |||||||| ||| ||| |||||||||||||||
Sbjct 650 ATTCCTCAGCTTGTTCAGGCTCAGGGCCCTTCACCTCATGTTGTACAATCAGTGTTGCTG 709
Query 1409 CAGCAAAAGGCTCAGGCTGTACCAGATAGTTCACAGATGCCTATGCAGAATCATGTGCAT 1468
|||||||| | | | | ||||| | | |||| | |||||||||||||||
Sbjct 710 CAGCAAAA-G-T-----T-CA-CAGAT-G--CCCAGA---C----CAGAATCATGTGCAT 750
Query 1469 CCATCTCAAGGTGTTCATGGCTTG 1492
||||||||||||||||||||||||
Sbjct 751 CCATCTCAAGGTGTTCATGGCTTG 774
Score = 147 bits (79), Expect = 5e-34
Identities = 118/135 (87%), Gaps = 9/135 (7%)
Strand=Plus/Plus
Query 935 CAGGCTGAATTGCGAGAACGTACTGAGCAGTATAACCAGCTCTGGCATGGTTGTCAGAGG 994
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 277 CAGGCTGAATTGCGAGAACGTACTGAGCACTATAACCAGCTCTGGCATGGTTGTCAGAGA 336
Query 995 CAGT--TTGCAG-------AGATGGAGAGATTGCATGTGCACACAGTGCAACAGCTTCAG 1045
|||| || ||| ||||||||||||||||| |||| ||||||||||||||||||
Sbjct 337 CAGTGGTTTCAGTTTGTGGAGATGGAGAGATTGCATTTGCATACAGTGCAACAGCTTCAG 396
Query 1046 CAAGAGCTTGCTAAT 1060
| |||||||| |||
Sbjct 397 CTTGAGCTTGCCAAT 411
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90045339180
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5