BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G53700.1 Length=1075 Score E Sequences producing significant alignments: (Bits) Value Ahg916949 jgi|Araly1|916949|Al_scaffold_0008_1700 501 4e-141 Ahg918673 jgi|Araly1|918673|Al_scaffold_0777_2 99.0 6e-20 Ahg905423 jgi|Araly1|905423|Al_scaffold_0003_2551 65.8 6e-10 Ahg892255 jgi|Araly1|892255|Al_scaffold_0006_251 65.8 6e-10 Ahg892258 jgi|Araly1|892258|Al_scaffold_0006_254 58.4 1e-07 Ahg911175 jgi|Araly1|911175|Al_scaffold_0001_1429 56.5 4e-07 > Ahg916949 jgi|Araly1|916949|Al_scaffold_0008_1700 Length=723 Score = 501 bits (271), Expect = 4e-141 Identities = 567/704 (81%), Gaps = 43/704 (6%) Strand=Plus/Plus Query 79 ATGGAAGAATCCGCCGTCAGAGGTCTGGAATCGAAGGATAC-GAACAATCGTAAATGCTT 137 |||||||||||| |||||| || || ||||||| ||| || |||| | | ||| || | Sbjct 1 ATGGAAGAATCCTCCGTCAAAGTTCAGGAATCGCTGGA-ACTGAACTGTAGAAAAAGCAT 59 Query 138 TAGTAAGATTTCCGTCGAGGGATACGACACTTCGGTTCAT-GAGTTTCCTCTCAAGCTCG 196 ||| | ||||||||| || ||||| ||||||||| ||||| || | |||||||||||||| Sbjct 60 TAGCACGATTTCCGTTGAAGGATATGACACTTCGCTTCATGGA-TATCCTCTCAAGCTCG 118 Query 197 CGTTG-GCAAAGCATTTCGCTTCATGCGGAAAGATTG-TAGATATTG-ATGTTCCCAGAG 253 ||||| | |||||| ||||||||||||||||| || | || || || |||||| |||| Sbjct 119 CGTTGAG-AAAGCACTTCGCTTCATGCGGAAAAATCGCAAG-TA-TGTTTGTTCCAAGAG 175 Query 254 ACTTTAAAAAGCGTATCCTCAAGAGTCCTCTCTTCATT-ATTTTTCATGCGAAAGAAGGA 312 ||||||||| | ||||||||||||| |||||||||||| | |||| | | | ||| Sbjct 176 ACTTTAAAAGGGGTATCCTCAAGAGCCCTCTCTTCATTGA-TTTT--T--G---G--GGA 225 Query 313 GAAAGTCCCG-TAGACAAGGCATTGGAACTTAGTGGGACTGACGTGGGAGGATGGAATGT 371 ||| || || |||||||||||||||||||||||| | |||||||||| |||||||||| Sbjct 226 GAAGGT-GCGAGAGACAAGGCATTGGAACTTAGTGGAAGTGACGTGGGACGATGGAATGT 284 Query 372 AGTCGTGAAGTCTCTACCCGGGCAGCAA-ATGTACAGA-GATCCTGGGGGAGTCGACCGC 429 |||||| ||| || ||||| ||||| || || ||| | ||||||| |||| || || | Sbjct 285 AGTCGTTAAGGCTGTACCCCGGCAGGAAGAT-TAC-TATGATCCTGCGGGATTCAACTTC 342 Query 430 TTCAAAGGAGAACGC-ACGCTCATAGTTAAGGTATATGATACACCTTCTACGTTGTC-TA 487 |||| ||||||||| | | | | ||||||||||||||| ||||||| || || | || Sbjct 343 TTCAGGGGAGAACGCGA-GTTGGTGGTTAAGGTATATGATTTACCTTCTTCGGTG-CGTA 400 Query 488 AGATTGATCTCCAGATCGGGCTGTGTAAACATTTCTCTTCATGTGGAGAGGTCACCGGTA 547 |||||||| |||| |||||||| ||| ||||||||||||||||||||||||||||| || Sbjct 401 AGATTGATGTCCAAATCGGGCTCTGTGAACATTTCTCTTCATGTGGAGAGGTCACCTGTG 460 Query 548 TAAGTGTTTTGGTCCACGGAAACTTGTGCTGTCACGAAAGTAAAG-CTCGAGTTGATATT 606 | | |||||| |||||||||| ||| || | ||||||||| |||| || | || |||| Sbjct 461 TTACTGTTTTAGTCCACGGAATCTT-TG-T-TCACGAAAG-AAAGACTATAATTTCTATT 516 Query 607 ATGGGAAAAGGATGTGTAGACAAGGCGCTGGAACTAAGTGGAC---GTACCGCAGATGGA 663 |||||| ||||||||||||| ||||||| | |||||||||||| ||| | |||||||| Sbjct 517 ATGGGAGAAGGATGTGTAGAGAAGGCGCAGCAACTAAGTGGACAATGTAACACAGATGGA 576 Query 664 TGGAAGATTGTAGTTTATTTTGTTGTGCCGCCAGCAG-GCAGA-AAATTAAAGCCTACTG 721 ||||||||||||||| ||| |||| | |||| | || || || ||| ||||||||| | Sbjct 577 TGGAAGATTGTAGTTGATTCTGTTATCCCGCTA--AGTGCTGATAAAAGAAAGCCTACCG 634 Query 722 GAAGTGGACATCCAACTATTGGAGTTGAGAGGATGAAGAAGGCT 765 | ||| ||||||| || ||| | |||||||||| ||||| ||| Sbjct 635 GCTGTGAACATCCAGCTGTTGTACTTGAGAGGATTAAGAAAGCT 678 > Ahg918673 jgi|Araly1|918673|Al_scaffold_0777_2 Length=711 Score = 99.0 bits (53), Expect = 6e-20 Identities = 55/56 (98%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 488 AGATTGATCTCCAGATCGGGCTGTGTAAACATTTCTCTTCATGTGGAGAGGTCACC 543 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 473 AGATTGATCTCCAGATCGGGCTGAGTAAACATTTCTCTTCATGTGGAGAGGTCACC 528 > Ahg905423 jgi|Araly1|905423|Al_scaffold_0003_2551 Length=960 Score = 65.8 bits (35), Expect = 6e-10 Identities = 40/42 (95%), Gaps = 2/42 (5%) Strand=Plus/Plus Query 610 GGA-AAAGGATGTGTAGACAAGGCGCTGGAACTAAGTGGACG 650 ||| ||| |||||||||||||||||||||||||||||||||| Sbjct 592 GGAGAAA-GATGTGTAGACAAGGCGCTGGAACTAAGTGGACG 632 > Ahg892255 jgi|Araly1|892255|Al_scaffold_0006_251 Length=789 Score = 65.8 bits (35), Expect = 6e-10 Identities = 40/42 (95%), Gaps = 2/42 (5%) Strand=Plus/Plus Query 610 GGA-AAAGGATGTGTAGACAAGGCGCTGGAACTAAGTGGACG 650 ||| ||| |||||||||||||||||||||||||||||||||| Sbjct 553 GGAGAAA-GATGTGTAGACAAGGCGCTGGAACTAAGTGGACG 593 > Ahg892258 jgi|Araly1|892258|Al_scaffold_0006_254 Length=747 Score = 58.4 bits (31), Expect = 1e-07 Identities = 40/44 (91%), Gaps = 2/44 (5%) Strand=Plus/Plus Query 610 GGA-AAAGGATGTGTAGACAAGGCGCTGGAACTAAGTGGACGTA 652 ||| ||| ||||||||||||||||||||||||||||| || ||| Sbjct 592 GGAGAAA-GATGTGTAGACAAGGCGCTGGAACTAAGTCGATGTA 634 > Ahg911175 jgi|Araly1|911175|Al_scaffold_0001_1429 Length=651 Score = 56.5 bits (30), Expect = 4e-07 Identities = 44/51 (86%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 492 TGATCTCCAGATCGGGCTGTGTAAACATTTCTCTTCATGTGGAGAGGTCAC 542 ||||||| || | | | || | ||||||||||||||||||||||||||||| Sbjct 87 TGATCTCAAGCTTGCGTTGAGAAAACATTTCTCTTCATGTGGAGAGGTCAC 137 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40029062850 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5