BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53710.1
Length=536
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497379 jgi|Araly1|497379|fgenesh2_kg.281__2__AT5G53710.1 521 2e-147
Ahg495448 jgi|Araly1|495448|fgenesh2_kg.8__1264__AT5G53710.1 516 7e-146
> Ahg497379 jgi|Araly1|497379|fgenesh2_kg.281__2__AT5G53710.1
Length=430
Score = 521 bits (282), Expect = 2e-147
Identities = 364/401 (91%), Gaps = 16/401 (4%)
Strand=Plus/Plus
Query 42 ATGAAGAAGAGACTAAGCTTGAAGCAAATCTTGGTGACTCTCTCCAAACTTGGTGTATGT 101
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1 ATGAAGAAGAGACTAAGCTTGAAGCAAATCTTGGTGACTCTCTCCAACCTCGGTGTATGT 60
Query 102 TTGTGCGTAAAACATCTTGATAGTAACAAAATTCAAGTTTCTAACACAGAGATCAAGAAC 161
||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 61 TTGTGCGTAAAACATATTGATAGTAACAAGATTCAAGATTCTAACACAGAGATCAAGAAC 120
Query 162 GGATCTGTATGTCCCGAGGATGAATTGGTGTCTGAAGAGAAGGTTATGGAAGGAAGAAGG 221
|||||| |||||||| | | | | | | || || ||| ||||||||||||
Sbjct 121 GGATCTCTATGTCCCCA--A-G-A-CGAT-TC---------GGCTATCGAAGGAAGAAGG 165
Query 222 AGAATCAAAGTGGTGATAACTAGGAAACAGCTGGATCGCTTGTTAGCGAAGCAAGTTTCA 281
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 166 AGAATCAAAGTGGTGATAACTAGGAAACAGCTGGAGCGCTTGTTGGCGAAGCAAGTTTCA 225
Query 282 TTGGAGCAGCTGGCTTTTGTGAATCAGAGAACCTCTCTCAGTTGTTTTGACGAGAGTAAA 341
||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 226 TTGGAGCAGCTTGTTTTTGTGAATCAGAGAACCTCTCTCAGTTGTTTTGACGACAGTAAG 285
Query 342 TGGATCCCAAGGCTTGAATCTATCCATGAATCACCTGAATTGTAAGATTTTGGGTTTTAG 401
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 286 TGGATCCCAAGGCTTGAATCTATCCATGAATCACCTGAATTGTAAAATTTTGGGTTTTAG 345
Query 402 ATGTTTCTTCAGATTTTGCAGCTTATGGTGTTGT-TATATC 441
||||||||||||| ||||| ||| |||||||||| ||||||
Sbjct 346 ATGTTTCTTCAGACTTTGCGGCTCATGGTGTTGTATATATC 386
Score = 78.7 bits (42), Expect = 4e-14
Identities = 46/48 (96%), Gaps = 0/48 (0%)
Strand=Plus/Plus
Query 487 TATCATAAACTCTTTTTGTAACTTCAGTGTTATTTAACTGAAAAAGTT 534
||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 383 TATCATAAAGTCTTTTTGTAACTTCAGTGTTATTTAACTGAATAAGTT 430
> Ahg495448 jgi|Araly1|495448|fgenesh2_kg.8__1264__AT5G53710.1
Length=430
Score = 516 bits (279), Expect = 7e-146
Identities = 363/401 (91%), Gaps = 16/401 (4%)
Strand=Plus/Plus
Query 42 ATGAAGAAGAGACTAAGCTTGAAGCAAATCTTGGTGACTCTCTCCAAACTTGGTGTATGT 101
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1 ATGAAGAAGAGACTAAGCTTGAAGCAAATCTTGGTGACTCTCTCCAACCTCGGTGTATGT 60
Query 102 TTGTGCGTAAAACATCTTGATAGTAACAAAATTCAAGTTTCTAACACAGAGATCAAGAAC 161
||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 61 TTGTGCGTAAAACATATTGATAGTAACAAGATTCAAGATTCTAACACAGAGATCAAGAAC 120
Query 162 GGATCTGTATGTCCCGAGGATGAATTGGTGTCTGAAGAGAAGGTTATGGAAGGAAGAAGG 221
|||||| |||||||| | | | | | | || || ||| ||||||||||||
Sbjct 121 GGATCTCTATGTCCCCA--A-G-A-CGAT-TC---------GGCTATCGAAGGAAGAAGG 165
Query 222 AGAATCAAAGTGGTGATAACTAGGAAACAGCTGGATCGCTTGTTAGCGAAGCAAGTTTCA 281
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 166 AGAATCAAAGTGGTGATAACTAGGAAACAGCTGGAGCGCTTGTTGGCGAAGCAAGTTTCA 225
Query 282 TTGGAGCAGCTGGCTTTTGTGAATCAGAGAACCTCTCTCAGTTGTTTTGACGAGAGTAAA 341
||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 226 TTGGAGCAGCTTGTTTTTGTGAATCAGAGAACCTCTCTCAGTTGTTTTGACGACAGTAAG 285
Query 342 TGGATCCCAAGGCTTGAATCTATCCATGAATCACCTGAATTGTAAGATTTTGGGTTTTAG 401
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 286 TGGATCCCAAGGCTTGAATCTATCCATGAATCACCTGAATTGTAAAATTTTGGGTTTTAA 345
Query 402 ATGTTTCTTCAGATTTTGCAGCTTATGGTGTTGT-TATATC 441
||||||||||||| ||||| ||| |||||||||| ||||||
Sbjct 346 ATGTTTCTTCAGACTTTGCGGCTCATGGTGTTGTATATATC 386
Score = 78.7 bits (42), Expect = 4e-14
Identities = 46/48 (96%), Gaps = 0/48 (0%)
Strand=Plus/Plus
Query 487 TATCATAAACTCTTTTTGTAACTTCAGTGTTATTTAACTGAAAAAGTT 534
||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 383 TATCATAAAGTCTTTTTGTAACTTCAGTGTTATTTAACTGAATAAGTT 430
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19535661568
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5