BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G53890.1 Length=3438 Score E Sequences producing significant alignments: (Bits) Value Ahg495467 jgi|Araly1|495467|fgenesh2_kg.8__1283__AT5G53890.1 5094 0.0 > Ahg495467 jgi|Araly1|495467|fgenesh2_kg.8__1283__AT5G53890.1 Length=3388 Score = 5094 bits (2758), Expect = 0.0 Identities = 3189/3399 (94%), Gaps = 22/3399 (1%) Strand=Plus/Plus Query 44 GAAGATACGTGTTGCTGATTTCAATTTGCTTCCACAATGTTGCTTCAACTACAAGTTGTT 103 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1 GAAGATACGTGTTGCTGATTTCAATTTGCTTGCACAATGTTGCTTCAACTACAAGTTGTG 60 Query 104 AAAGCTTGATTCTTTTTGGGACATGAGCATGTGACTTATGAAAGTTTTAGTCTTTAT-TT 162 |||||||||||| |||||||||||||||||||||||||||||||||||||||||| | | Sbjct 61 AAAGCTTGATTC-TTTTGGGACATGAGCATGTGACTTATGAAAGTTTTAGTCTTT-TGCT 118 Query 163 GTGATTTGAGCTGGCTAGAGAAGACTCTTGTCTCTGTTTGATAG-TAGTCATGGTGATCA 221 |||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||| Sbjct 119 GTGATTTGAGCTGGCTAGAGAAGACTCTTGTCTCTGTTTG-TTGTTAGTCATGGTGATCA 177 Query 222 TTCTCCTATTGGTCTTCTTTGTTGGTTCTTCTGTGAGCC-AACCATGTCATCCCAACGAC 280 |||||||||||| ||||||||||||||| |||||||||| | |||||||||||| |||| Sbjct 178 TTCTCCTATTGGCCTTCTTTGTTGGTTCATCTGTGAGCCTGA-CATGTCATCCCAGCGAC 236 Query 281 TTATCTGCGCTCCGGGAATTGGCAGGAGCGTTGAAGAACAAGTCTGTTACAGAATCTTGG 340 |||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 237 TTATCTGCACTCCGGGAATTCGCAGGAGCGTTGAAGAACAAGTCTGTTACGGAATCTTGG 296 Query 341 TTAAATGGTTCACGTTGTTGTGAATGGGATGGTGTGTTTTGTGAAGGGAGTGATGTTTCT 400 ||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 297 TTAAACGGTTCGCGTTGTTGTGAATGGGATGGTGTGTTTTGTGAAGGGGGTGATGTTTCT 356 Query 401 GGTCGAGTTACAAAGTTGGTT-TTACCTGAAAAAGGTTTGGAAGGTGTGATTTCGAAGTC 459 ||||||||||||||||||||| || ||| || ||||||||||||||||||||| ||| Sbjct 357 GGTCGAGTTACAAAGTTGGTTCTT-TCTGGTAAGGGTTTGGAAGGTGTGATTTCGGGGTC 415 Query 460 TTTAGGGGAGTTGACTGAGCTGCGAGTACTTGATCTATCTCGTAACCAGCTTAAAGGCGA 519 |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 416 TTTAGGCGAGTTGAGTGAGCTGCGAGTACTTGATCTATCTCGTAACCAGCTTAAAGGCGA 475 Query 520 AGTACCAGCGGAGATTTCTAAGTTAGAGCAGCTTCAAGTTCTTGATTTGAGTCATAACCT 579 |||||||||||||||| ||||||||||||||| |||||||||||||||| ||||| || Sbjct 476 CTTACCAGCGGAGATTTCCAAGTTAGAGCAGCTTGAAGTTCTTGATTTGAGCCATAATCT 535 Query 580 GTTATCAGGGTCTGTTTTGGGAGTGGTTTCGGGTTTAAAGCTGATTCAGTCGCTGAACAT 639 ||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 536 GTTGTCAGGGTCGGTTTTGGGAGTGGTTTCTGGTTTAAAGCTGATTCAGTCGCTGAACAT 595 Query 640 TTCGAGCAATTCGCTTAGCGGGAAGTTATCGGATGTTGGAGTGTTTCCTGGTCTTGTGAT 699 ||| ||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||| Sbjct 596 TTCCAGCAATTCGCTAAGCGGGAATTTATCGGATGTTGGAATGTTTCCTGGTCTTGTGAT 655 Query 700 GCTTAATGTAAGCAACAATTTGTTTGAGGGTGAGATTCATCCTGAACTCTGTAGCTCATC 759 | |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| Sbjct 656 GTTTAATGTAAGCAACAATTTGTTCGAGGGTGAGATTCATCCTGAACTCTGCAGCTCATC 715 Query 760 TGGTGGGATACAGGTTCTTGATTTATCGATGAATCGTTTGGTGGGGAATCTTGATGGCTT 819 ||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 716 TGGTGAGATTCAGGTTCTTGATTTATCGATGAATCGTTTGGTGGGGAATCTTGTTGGCTT 775 Query 820 GTACAACTGCAGCAAATCTATTCAACAGCTCCATATCGACAGCAACAGATTGACGGGCCA 879 ||| || |||||||| |||||||| | ||||||| ||||||||||| ||||||| ||||| Sbjct 776 GTATAATTGCAGCAAGTCTATTCAGCGGCTCCATGTCGACAGCAACGGATTGACTGGCCA 835 Query 880 ACTTCCGGATTATCTTTATTCGATCCGGGAGTTGGAGCAACTATCACTCTCTGGAAACTA 939 ||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||| Sbjct 836 GCTTCCGGATTATCTTTATTCGATCCGGGACTTGGAGCAACTATCAGTCTCTGGGAACTA 895 Query 940 CTTATCCGGAGAGTTAAGCAAGAACTTGAGCAATCTCTCTGGTCTGAAGTCTCTGTTGAT 999 |||||| ||| |||| ||| ||||||||||||||||||||||||| |||||||||||||| Sbjct 896 CTTATCTGGACAGTTGAGCCAGAACTTGAGCAATCTCTCTGGTCTTAAGTCTCTGTTGAT 955 Query 1000 ATCAGAGAACCGGTTTTC-GGATGTAATTCCAGATGTTTTTGGTAACCTCACTCAATTGG 1058 || |||||||||||||| || |||||||||||||||||||||||| |||||||| ||| Sbjct 956 TTCCGAGAACCGGTTTTCTGG-TGTAATTCCAGATGTTTTTGGTAATCTCACTCAGCTGG 1014 Query 1059 AACACCTCGACGTGAGCTCCAACAAGTTCTCGGGAAGGTTTCCGCCAAGTTTATCCCAAT 1118 ||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||| |||| Sbjct 1015 AACACCTCGACGTAAGCTCCAACAAGTTCTCGGGAAGATTTCCGCCAAGCTTATCTCAAT 1074 Query 1119 GCTCGAAGCTGCGGGTTCTTGATCTTAGGAACAACTCGTTATCCGGTTCTATCAATCTTA 1178 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1075 GCTCGAAGCTGCGGGTTCTTGATCTTAGGAACAACTCGTTATCTGGTTCTATCAATCTTA 1134 Query 1179 ACTTCACTGGATTTACCGATCTTTGCGTGCTTGATCTCGCCAGTAATCATTTCTCTGGAC 1238 |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct 1135 ACTTCACTGGATTTACTGATCTTTGCGTGCTCGATCTCGCCAGTAATCATTTCTCTGGAC 1194 Query 1239 CTCTTCCTGATTCCCTTGGCCACTGTCCCAAGATGAAGATCTTGAGTTTGGCGAAAAACG 1298 | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1195 CACTTCCTGATTCCCTTGGCCATTGTCCCAAGATGAAGATCTTGAGTTTGGCGAAAAACG 1254 Query 1299 AGTTTC-GCGGCAAAATCCCTGACACCTTCAAGAATCTGCAGTCTCTCTTGTTCCTGTCC 1357 || ||| ||||||||||||| |||||||||||||||||| | ||||||||||||||||| Sbjct 1255 AG-TTCAGCGGCAAAATCCCCGACACCTTCAAGAATCTGGACTCTCTCTTGTTCCTGTCT 1313 Query 1358 TTATCCAACAACAGCTTTGTGGATTTTTCTGAGACAATGAATGTGCTGCAACATTGCAGA 1417 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1314 TTATCCAACAACAGCTTTGTGGATTTTTCTGAGACAATGAATGTGCTGCAACATTGCAGA 1373 Query 1418 AACCTCTCCACTCTTATTCTCTCAAAGAACTTCATCGGCGAGGAAATACCAAACAACGTC 1477 || |||||||||||||| ||||||||||| |||||||||||||||||||||| |||||| Sbjct 1374 AATCTCTCCACTCTTATCCTCTCAAAGAATTTCATCGGCGAGGAAATACCAAGGAACGTC 1433 Query 1478 ACTGGTTTCGACAACCTCGCGATTTTAGCGCTAGGAAATTGCGGTCTTAGAGGTCAGATT 1537 ||||||||| ||||||||||||||||||| || ||||| ||||||||||||||||||||| Sbjct 1434 ACTGGTTTCAACAACCTCGCGATTTTAGCCCTCGGAAACTGCGGTCTTAGAGGTCAGATT 1493 Query 1538 CCGAGCTGGCTATTGAACTGCAAGAAGCTGGAAGTTCTTGATCTCTCTTGGAATCACTTT 1597 ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| || Sbjct 1494 CCGAGCTGGTTATTGAATTGCAAGAAGCTGGAAGTTCTTGATCTCTCTTGGAATCACATT 1553 Query 1598 TACGGAACTATCCCTCATTGGATTGGTAAGATGGAGAGTTTGTTCTACATAGACTTCTCA 1657 ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| Sbjct 1554 TACGGAACTATCCCTCATTGGATCGGTAAGATGGAGAGTCTGTTCTACATAGACTTCTCA 1613 Query 1658 AACAACACTTTGACCGGAGCAATCCCGGTAGCCATAACCGAGCTCAAGAACCTAATCCGT 1717 ||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||| | Sbjct 1614 AACAACACTTTAACCGGAGAAATCCCGGTAGCCATAACCGAGCTCAAGAACTTAATCCAT 1673 Query 1718 CTAAACGGAACCGCTTCTCAGATGACCGA-CTCTTCTGGAATTCCTCTCTACGTAAAGCG 1776 ||||| | |||||||||||||||||| | ||||||||| |||||||||||||||||||| Sbjct 1674 TTAAACTGCACCGCTTCTCAGATGACC-ACCTCTTCTGGTATTCCTCTCTACGTAAAGCG 1732 Query 1777 GAACAAGAGCTCCAACGGTCTTCCATATAACCAAGTTTCAAGATTCCCGCCATCTATCTA 1836 |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1733 GAACAAGAGCTCGAGTGGTCTTCCATATAACCAAGTTTCAAGATTCCCGCCATCTATCTA 1792 Query 1837 TTTGAATAATAACCGTCTCAACGGGACGATCTTGCCAGAGATAGGACGTTTGAAAGAGCT 1896 |||||| |||||||| |||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 1793 TTTGAACAATAACCGCCTCAACGGGACGATCTTGCCGGAGATCGGACGTTTGAAAGAGCT 1852 Query 1897 TCACATGCTGGACTTGAGCAGGAACAACTTCACTGGGACGATACCTGATTCCATTTCAGG 1956 |||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||| Sbjct 1853 TCACATGCTGGATTTGAGCAGGAACAACTTCTCCGGGACGATACCTGATTCCATTTCAGG 1912 Query 1957 GCTTGACAATTTGGAGGTTCTTGATTTATCTTACAATCATCTCTACGGTTCGATTCCTCT 2016 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1913 GCTTGACAATTTGGAGGTTCTTGATTTGTCTTACAATCATCTCTACGGTTCGATTCCTCT 1972 Query 2017 GTCTTTTCAGAGTCTCACTTTCTTGTCGAGGTTCAGCGTAGCGTATAACCGTCTCACTGG 2076 ||||||||||||||||||||||||||||| |||||| || || ||||| ||||||||||| Sbjct 1973 GTCTTTTCAGAGTCTCACTTTCTTGTCGAAGTTCAGTGTTGCATATAATCGTCTCACTGG 2032 Query 2077 CGCGATTCCATCTGGAGGTCAGTTCTACAGCTTCCCGCACTCAAGCTTCGAAGGAAACTT 2136 ||||||||||||||||| ||||||||||||||||| ||||| ||||| |||||||| || Sbjct 2033 TGCGATTCCATCTGGAGGCCAGTTCTACAGCTTCCCACACTCCAGCTTTGAAGGAAATTT 2092 Query 2137 AGGACTTTGTCGCGCGATTGATTCTCCTTGCGATGTTCTGATGAGTAACATGTTGAATCC 2196 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2093 GGGGCTTTGTCGCGCGATTGATTCTCCTTGCGATGTTCTGATGAGTAACATGTTGAATCC 2152 Query 2197 GAAAGGTTCTTCGCGTAGGAATAACAATGGCGGAAAG-TTCGGGAGAAGCAGCATTGTTG 2255 ||||||| |||||||||| |||||||||||||| ||| |||||||||||||||||||||| Sbjct 2153 GAAAGGTCCTTCGCGTAGTAATAACAATGGCGG-AAGATTCGGGAGAAGCAGCATTGTTG 2211 Query 2256 TACTTACCATAAGTCTAGCCATTGGGATTACTCTACTTCTTTCTGTTATTCTGTTAAGGA 2315 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 2212 TACTTACCATAAGTCTAGCCATTGGGATTACTCTACTACTTTCTGTTATTCTGTTAAGAA 2271 Query 2316 TTTCAAGAAAAGATGT-GGATGATCGAATCAATGACGTTGATGAGGAGACTATCAGCGGG 2374 ||||||||||||| | |||||||||||| ||||||||||||||||| ||||||||||| Sbjct 2272 TTTCAAGAAAAGA-CTCGGATGATCGAATTAATGACGTTGATGAGGAAACTATCAGCGGT 2330 Query 2375 GTTTCGAAAGCTCTCGGGCCATCAAAGATTGTGCTTTTCCATAGCTGTGGATGTAAAGAT 2434 ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 2331 GTTCCGAAAGCTCTCGGGCCATCAAAGATTGTGCTTTTCCATAGCTGTGGATGCAAAGAT 2390 Query 2435 CTAAGTGTTGAGGAGTTGTTGAAGTCTACGAACAATTTCAGCCAGGCTAACATTATAGGA 2494 || |||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||| Sbjct 2391 CTGAGTGTTGAGGAGTTGTTGAAATCTACAAACAATTTCAGCCAGGCAAACATTATAGGA 2450 Query 2495 TGTGGCGGATTTGGTCTTGTGTACAAAGCTAATTTTCCCGATGGCTCGAAAGCAGCAGTC 2554 ||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| ||| Sbjct 2451 TGTGGTGGATTTGGTCTTGTGTACAAAGCAAATTTTCCCGATGGCTCAAAAGCAGCGGTC 2510 Query 2555 AAGAGGCTTTCTGGTGACTGTGGGCAGATGGAACGTGAATTCCAAGCGGAAGTTGAAGCA 2614 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2511 AAGAGGCTTTCTGGTGACTGTGGGCAGATGGAACGTGAATTCCAAGCGGAAGTTGAAGCA 2570 Query 2615 TTGTCTCGAGCGGAACATAAGAATCTAGTCTCTCTTCAAGGCTACTGCAAGCATGGAAAC 2674 ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 2571 TTGTCGCGAGCGGAACACAAGAATCTAGTCTCTCTTCAAGGCTACTGCAAGCATGGAAAC 2630 Query 2675 GATAGGCTGCTTATTTACTCGTTTATGGAGAATGGAAGTTTGGATTATTGGCTGCATGAG 2734 ||| |||||||||| |||||||| ||||| || ||||| ||||| |||||||| || ||| Sbjct 2631 GATCGGCTGCTTATCTACTCGTTCATGGAAAACGGAAGCTTGGACTATTGGCTACACGAG 2690 Query 2735 CGGGTAGATGGGAATATGACTCTTATATGGGATGTGAGATTGAAGATAGCTCAAGGCGCA 2794 ||||| || |||||||||||||| | |||||||||||||||||||||||| |||||||| Sbjct 2691 CGGGTTGACGGGAATATGACTCTCAAATGGGATGTGAGATTGAAGATAGCACAAGGCGCG 2750 Query 2795 GCGCGAGGGCTTGCTTACTTGCATAAAGTCTGTGAACCTAATGTTATACATAGGGATGTG 2854 ||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||| Sbjct 2751 GCGCGCGGGCTTGCTTACTTGCATAAAGTCTGTGAACCAAATGTTATCCATAGGGATGTG 2810 Query 2855 AAGTCTAGTAACATTTTGTTAGATGAGAAGTTTGAAGCTCATCTTGCGGATTTTGGGTTA 2914 ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 2811 AAGTCGAGTAACATTTTGTTAGATGAGAAGTTTGAAGCTCATCTTGCGGATTTCGGGTTA 2870 Query 2915 GCGAGGTTGCTTAGGCCGTATGATACTCACGTGACGACTGATTTGGTTGGGACATTGGGT 2974 |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 2871 GCGAGGTTGCTTAGGCCGTACGATACTCACGTGACGACTGATTTGGTGGGGACATTGGGT 2930 Query 2975 TATATTCCTCCTGAGTATAGCCAGTCTTTGATTGCAACATGTAGAGGAGACGTTTACAGT 3034 |||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||| Sbjct 2931 TATATTCCTCCTGAATATAGCCAGTCTCTGATTGCAACATGTAGAGGAGATGTTTACAGT 2990 Query 3035 TTTGGCGTTGTGCTTTTGGAGCTAGTTACGGGTCGTAGACCTGTAGAAGTCTGTAAAGGG 3094 ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 2991 TTTGGCGTTGTGCTTTTGGAGCTAGTTACAGGTCGTAGACCTGTGGAAGTCTGTAAAGGG 3050 Query 3095 AAAAGTTGCAGAGATTTGGTGTCTCGGGTGTTTCAAATGAAGGCTGAGAAGCGTGAAGCT 3154 |||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||| Sbjct 3051 AAAAGTTGCAGAGATTTGGTGTCTCGGGTGTTTCAAATGAAGGCCGAGAAGCGCGAGGCT 3110 Query 3155 GAGCTTATCGATACAACAATACGCGAAAATGTGAACGAGAGAACGGTTTTGGAGATGTTG 3214 ||||||||||||||||||||||||||||| || ||||||| ||||||||| ||||||||| Sbjct 3111 GAGCTTATCGATACAACAATACGCGAAAACGTCAACGAGAAAACGGTTTTAGAGATGTTG 3170 Query 3215 GAGATTGCTTGCAAATGCATTGATCATGAGCCTAGAAGGAGACCACTGATCGAAGAAGTC 3274 |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| Sbjct 3171 GAGATTGCTTGCAAATGCATTGATCATGAGCCTAGAAGGAGACCGTTGATCGAGGAAGTC 3230 Query 3275 GTTACTTGGCTTGAAGATCTTCCTATGGAGTCTGTTCAACAACAATGAAAAACTCCTCTA 3334 ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| | || Sbjct 3231 GTTACTTGGCTTGAAGATCTTCCCATGGAGTCTGTTCAACAACAATGAAAA-CTCTTTTA 3289 Query 3335 TAAGTAGCTTTCTTAGTTTCTT-GTGAATGAAA-GAGTGTAGATCACTGGTTTTAATCTA 3392 |||| ||||||||||||||||| || |||||| |||||||||||||| ||||||||||| Sbjct 3290 TAAGAAGCTTTCTTAGTTTCTTTGTTAATGAAGTGAGTGTAGATCACTAGTTTTAATCTA 3349 Query 3393 AGAAACTTGGGGTATACATGTAAAGCAAAGAACtttttt 3431 ||||||||| |||||||||||||||||| |||||||||| Sbjct 3350 AGAAACTTGTGGTATACATGTAAAGCAATGAACTTTTTT 3388 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 129814381503 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5