BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G53900.2 Length=1650 Score E Sequences producing significant alignments: (Bits) Value Ahg495469 jgi|Araly1|495469|fgenesh2_kg.8__1285__AT5G53900.2 2379 0.0 > Ahg495469 jgi|Araly1|495469|fgenesh2_kg.8__1285__AT5G53900.2 Length=1630 Score = 2379 bits (1288), Expect = 0.0 Identities = 1548/1664 (93%), Gaps = 55/1664 (3%) Strand=Plus/Plus Query 1 GTCGCCGGGATTTCGATTAACATAATTCTGTTTCACTaaaaaagactcagaagaaaaaag 60 |||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||| Sbjct 1 GTCGCCGGGATTTCGATTAACATAATTCTG-TTCACTAAAAAAGACTCTGAACAAAAAAA 59 Query 61 aaaaagaaCAGTAGTGAGAGAAAGT---A-AGAG-CGAG--TCTGTGGTTGACAAAACTC 113 ||||||||||||||||||||||||| | |||| ||| ||||||||||||||||||| Sbjct 60 AAAAAGAACAGTAGTGAGAGAAAGTAAGAGAGAGATGAGACTCTGTGGTTGACAAAACTC 119 Query 114 TTTTGCTCTCGCAGAGAAAAGATAACTTAttttt-ttttCTTTAAAATATTTGGAAACAA 172 ||||| |||| ||||| ||||||||||||||||| |||||||| |||||||||||||||| Sbjct 120 TTTTGTTCTCACAGAG-AAAGATAACTTATTTTTCTTTTCTTTTAAATATTTGGAAACAA 178 Query 173 AAGAGACTCTGTCT---G-AAG--AAAG-C-TAAAGACTTGTGATGATTCTTGACAAAAG 224 |||||||||||||| | ||| |||| | ||||||||||||||||||||||||||||| Sbjct 179 AAGAGACTCTGTCTGAAGAAAGCTAAAGACTTAAAGACTTGTGATGATTCTTGACAAAAG 238 Query 225 AAACTGTGTCTTTGGAGAACTCTGAAGTAagagagacagagaaagacaaagagagagaCA 284 || |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct 239 AAGCTGTGTCTTTGGAGAACTTTGAAGT-AGAGAGACAGAGAAAGACAAAGAGAGAGACA 297 Query 285 TGGTGGGCTCAGGAGTTGGAGGAGGAGATAGAAGCAAAGATGCTGTAGGAATGATGGCAC 344 ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| Sbjct 298 TGGTGGGCTCAGGAGCT---GGAGGAGATAGAAGCAAAGATGCTGTAGGAATGATGGCAC 354 Query 345 TTCATGAAGCACTTAGAAGCGTCTGTTTTAACTCCGACTGGATTTACTCTGTCTTCTGGA 404 |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| Sbjct 355 TTCATGAAGCACTTAGAAGCGTCTGTCTTAACTCCGACTGGATTTACTCTGTTTTCTGGA 414 Query 405 CCATTCGTCCCCGACCGAGGGTCCGTGGTGGTAATGGCTGCAAGATTGGTGATGAAAGTG 464 ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 415 CCATTCGTCCCCGACCGAGGGTCCGTGGTGGTAATGGTTGCAAGATTGGTGACGAAAGTG 474 Query 465 GCAGCTTGATGTTGATGTGGGAAGATGGGTTTTGTGGTGGAGGAAGAAGTGAAGATCTTT 524 |||||||||||||||||||||||||||||||||||||| | | || |||| || Sbjct 475 GCAGCTTGATGTTGATGTGGGAAGATGGGTTTTGTGGT----G--G-AG-GAAG----TT 522 Query 525 GTCTGGAAACAGACATTGAAGGTCATGAAGAAGATCTTGTCAGAAAAGCTTTCAGCAAGA 584 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | Sbjct 523 GTCTGGAAACAGACATTGAAGG---TGAAGAAGATCTTGTCAGAAAAGCTTTCAGCAAAA 579 Query 585 TGTCCATTCAGTTATATAATTATGGAGAAGGATTGATGGGTAAAGTTGCTTCTGATAAAT 644 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 580 TGTCCATACAGTTATATAATTATGGAGAAGGATTGATGGGTAAAGTTGCTTCTGATAAAT 639 Query 645 GTCACAAGTGGGTTTTCAAAGAACCATCTGAATCTGAACCAAATCTTGCTAATTACTGGC 704 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 640 GTCACAAGTGGGTATTCAAAGAACCATCTGAATCTGAACCAAATCTTGCTAATTACTGGC 699 Query 705 AAAGTTCTTTTGATGCTCTTCCTCCAGAATGGACCGACCAATTCGAATCAGGCATTCAGA 764 | |||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 700 AGAGTTCTTTTGATGCTCTTCCTCCAGAATGGACCGACCAATTCGAATCAGGAATCCAGA 759 Query 765 CAATTGCTGTGATTCAAGCTGGACATGGTCTGTTACAGCTAGGTTCTTGCAAGATTATTC 824 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 760 CAATTGCTGTGATTCAAGCTGGACATGGTCTGTTACAGCTAGGTTCTTGCAAGATTATTC 819 Query 825 CAGAAGATCTTCATTTTGTGCTAAGGATGAGGCAAATGTTTGAATCAATTGGTTACAGAT 884 |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 820 CAGAAGATCTTCATTTTGTGCTGAGGATGAGGCAAATGTTTGAATCAATTGGTTATAGAT 879 Query 885 CAGGTTTTTACCTCTCACAGCTCTTCTCTTCAAACCGAACCGCGACT-C-C-ATCTTCTT 941 |||||||||||||||| |||||||||||||||||||||||||||||| | | |||||||| Sbjct 880 CAGGTTTTTACCTCTCGCAGCTCTTCTCTTCAAACCGAACCGCGACTACTCCATCTTCTT 939 Query 942 CCACGGTTCCAAACCAGATACCTCAGTCTCAAGGTTTTAACTGGGGATCACACTCACCTT 1001 | |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| Sbjct 940 CTTCGGTTCCAAACCAGATACCTCAGTCTCAAGCTTTTAACTGGGGATCACACTCTCCTT 999 Query 1002 TGTTACCTTCCCCTAGCTTTCAGAACCAACTACCTGCTTCAGCTAGATTCGGTTTCCTTC 1061 |||||||||||||||| |||||||||||||||||||| ||||| |||||||||| |||| Sbjct 1000 TGTTACCTTCCCCTAGTTTTCAGAACCAACTACCTGCATCAGCCCGATTCGGTTTTCTTC 1059 Query 1062 AAGATAACAATGTTCCTCCTCAGATGCTTCCTCCAATGGAAGAGCATGAAGACGACATCA 1121 |||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 1060 AAGATACCAATGTTCCTCCTCAGATGCTTCCTCCAATGGAAGAACACGAAGACGACATCA 1119 Query 1122 AATGGCCTAATGGTTTGTCGTTGTTCAATGCGTTGACTGGACGTGCAGATGAAGCTAGTA 1181 ||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1120 AATGGCCCAACGGTTTGTCGTTGTTCAATGCGTTGACTGGCCGTGCAGATGAAGCTAGTA 1179 Query 1182 GGCTTTTGTTTAACCAGGAGCAGAACCCGATGAATGTCGAAAACCAGAACGAGTTCTTGA 1241 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1180 GGCTTTTGTTTAACCAGGAGCAGAACCCGATGAATGTCGAAAATCAGAACGAGTTCTTGA 1239 Query 1242 ACCTTGAAGGTCATCATCCTAACAAGTTTAGAAGAAGCTATACATTGCCAGCTCGAATGG 1301 | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1240 ATCTTGAAGGTCATCATCCTAACAAGTTTAGAAGAAGCTATACATTGCCAGCTAGAATGG 1299 Query 1302 ATTCTTCGTCATCATCAACCTCGCTTGATCAGCAACAACCACTGGAGTTTAGGAACAATA 1361 ||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1300 ATTCTTCTTCATCATCTACCTCGCTTGATCAGCAACCACCACTGGAGTTTAGGAACAATA 1359 Query 1362 ACTCTGGAAGCAACTCGGGTTTGTTCCCTGACGTTATGGAGACGTTTTTGAGGTGATTGA 1421 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1360 ACTCTGGAAGCAACTCGGGTTTGTTCCCTGACGTTATGGAGACGTTCTTGAGGTGATTGA 1419 Query 1422 CATGTTCAAGATTCAG-GTTTAAGGACAGATTAAACTAAAAGCTCTCGATGCTAGTTATT 1480 |||||||||||||| | ||| |||||||||| |||| || ||| | |||||||||| || Sbjct 1420 CATGTTCAAGATTCTGAGTT-AAGGACAGATAAAACGGAATGCTTTGGATGCTAGTTTTT 1478 Query 1481 AGCTTATGCTTGT-TATAAATACATGAAACTCTCtgttcgttgtttcttccttcttgttg 1539 ||||| ||||| | |||||||| ||||| || | | || |||||||||| |||| Sbjct 1479 AGCTTTTGCTT-TCTATAAATATATGAA-CTATGT-TT-GTTGTTTCTT-------GTTG 1527 Query 1540 ttgttgttgttattgtaccatattgtctgattgtttctCCTTTTATGTCAACACTCTTTT 1599 ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1528 TTGTTGTTGTTAT-GTACCATATTGTCTGATTGTTTCTCCTTTTATGTCAAAACTCTTTT 1586 Query 1600 AACATTTGAAGATACTTTAAAAACACGTTATAGATTTGGCTTTT 1643 |||||||||||||||||||||| ||| |||| |||||||||||| Sbjct 1587 AACATTTGAAGATACTTTAAAAGCACATTATTGATTTGGCTTTT 1630 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61858557880 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5