BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G53970.1
Length=1571
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950020 jgi|Araly1|950020|scaffold_801907.1 1989 0.0
> Ahg950020 jgi|Araly1|950020|scaffold_801907.1
Length=1276
Score = 1989 bits (1077), Expect = 0.0
Identities = 1220/1288 (95%), Gaps = 14/1288 (1%)
Strand=Plus/Plus
Query 123 GATCGAATTCAAGAAGAAGAGATGGAGAATGGAGCAACGACGACGAGCACAATTACCATC 182
|||||||||||||||| ||||||||||||| | | ||| |||||||||||||||||||||
Sbjct 1 GATCGAATTCAAGAAG-AGAGATGGAGAAT-G-G-AACAACGACGAGCACAATTACCATC 56
Query 183 AAAGGGATTCTGAGTTTGCTAATGGAAAGCATCACAACAGAGGAAGATGAAGGAGGAAAG 242
||||||||||||||||||||||||||||| || | |||||||||| ||| | |||||
Sbjct 57 AAAGGGATTCTGAGTTTGCTAATGGAAAGTAT--C-TCAGAGGAAGAAGAA--A-GAAAG 110
Query 243 AGAGTAATATCTCTGGGAATGGGAGACCCAACACTCTACTCGTGTTTTCGTACAACACAA 302
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 111 AGAGTAATATCTCTGGGAATGGGAGACCCAACACTATACTCATGTTTTCGTACAACACAA 170
Query 303 GTCTCTCTTCAAGCTGTTTCTGATTCTCTTCTCTCCAACAAGTTCCATGGTTACTCTCCT 362
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 171 GTCTCTCTTCAAGCTGTTTCTGATTCTCTTCTCTCTAACAAGTTCCATGGTTATTCTCCT 230
Query 363 ACCGTCGGTCTTCCCCAAGCTCGAAGGGCAATAGCAGAGTATCTATCGCGTGATCTTCCA 422
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 231 ACCGTCGGTCTTCCCCAAGCTCGAAGGGCAATTGCAGAGTATCTATCGCGTGATCTTCCA 290
Query 423 TACAAACTT-TCACAGGATGATGTGTTTATCACATCGGGTTGCACGCAAGCGATCGATGT 481
|||||| || |||| ||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct 291 TACAAA-TTGTCACTGGATGATGTGTTTATCACATCAGGTTGTACGCAAGCAATCGATGT 349
Query 482 AGCATTGTCGATGTTAGCTCGTCCCAGGGCTAATATACTTCTTCCAAGGCCTGGTTTCCC 541
||||||||| ||||| |||||||||||||| ||||| || |||||||| |||||||||||
Sbjct 350 AGCATTGTCAATGTTGGCTCGTCCCAGGGCCAATATTCTGCTTCCAAGACCTGGTTTCCC 409
Query 542 AATCTATGAACTCTGTGCTAAGTTTAGACACCTTGAAGTTCGCTACGTCGATCTTCTTCC 601
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 410 AATCTATGAACTCTGTGCTAAGTTTAGACACCTTGAGGTTCGTTACGTCGATCTTCTTCC 469
Query 602 GGAAAATGGATGGGAGATCGATCTTGATGCTGTCGAGGCTCTTGCAGACGAAAACACGGT 661
||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 470 AGAAAACGGATGGGAGATCGATCTTGATGCTGTCGAGTCTCTTGCAGACGAAAACACTGT 529
Query 662 TGCTTTGGTTGTTATAAACCCTGGTAATCCTTGCGGGAATGTCTATAGCTACCAGCATTT 721
|||||||||| |||||||||| ||||||||||| |||||||||||||| || ||||||||
Sbjct 530 TGCTTTGGTTATTATAAACCCCGGTAATCCTTGTGGGAATGTCTATAGTTATCAGCATTT 589
Query 722 GATGAAGATTGCGG-AATCGGCGAAAAAACTAGGGTTTCTTGTGATTGCTGATGAGGTTT 780
|||||||||||||| ||| |||||||||| ||||||||||||||||||||||||| ||||
Sbjct 590 GATGAAGATTGCGGAAAT-GGCGAAAAAATTAGGGTTTCTTGTGATTGCTGATGAAGTTT 648
Query 781 ACGGTCATCTTGCTTTTGGTAGCAAACCGTTTGTGCCAATGGGTGTGTTTGGATCTATTG 840
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 649 ACGGTCATCTCGCTTTTGGTAGCAAACCGTTTGTGCCGATGGGTGTGTTTGGATCTATTG 708
Query 841 TTCCTGTGCTTACTCTTGGCTCTTTATCAAAGAGATGGATAGTTCCAGGTTGGCGACTCG 900
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 709 TTCCTGTGCTTACTCTTGGCTCTTTATCAAAGAGATGGATAGTTCCTGGTTGGCGGCTCG 768
Query 901 GGTGGTTTGTCACCACTGATCCTTCTGGTTCCTTTAAGGACCCTAAGATCATTGAGAGGT 960
|||||||||| |||||||||||||||||||| |||||||||||||||||||| ||| |||
Sbjct 769 GGTGGTTTGTGACCACTGATCCTTCTGGTTCGTTTAAGGACCCTAAGATCATCGAGCGGT 828
Query 961 TTAAGAAATACTTTGATATTCTTGGTGGACCAGCTACATTTATTCAGGCTGCAGTTCCCA 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 829 TTAAGAAATACTTTGATATTCTTGGTGGACCAGCTACATTTATTCAGGCTGCAGTTCCCA 888
Query 1021 CTATTTTGGAACAGACGGATGAGTCTTTCTTCAAGAAAACCTTGAACTCGTTGAAGAACT 1080
|||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||
Sbjct 889 CTATTTTGGAACAGACGGATGAATCATTCTTCAAGAAAACATTGAACTCGTTGAAGAACT 948
Query 1081 CTTCGGATATTTGTTGTGACTGGATCAAGGAGATTCCTTGCATTGATTCCTCGCATCGAC 1140
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 949 CTTCGGATATTTGTTGTGATTGGATCAAGGAGATTCCTTGCATTGATTCCTCGCATCGAC 1008
Query 1141 CAGAAGGATCCATGGCAATGATGGTTAAGCTGAATCTCTCATTACTTGAAGATGTAAGTG 1200
||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
Sbjct 1009 CAGAAGGATCCATGGCAATGATGGTTAAGCTGAATCTCTCAATACTCGAAGATGTAAGCG 1068
Query 1201 ACGATATCGACTTCTGTTTCAAGTTAGCTAGGGAAGAATCAGTCATCCTTCTTCCTGGGA 1260
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1069 ACGATATCGACTTCTGTTTCAAGTTAGCTAGAGAAGAATCAGTCATCCTTCTTCCCGGGA 1128
Query 1261 CCGCGGTGGGGCTGAAGAACTGGCTGAGGATAACGTTTGCAGCAGATGCAACTTCGATTG 1320
|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
Sbjct 1129 CCGCGGTGGGGCTGAAGAACTGGCTGAGGATAACGTTTGCGGCAGATGCACCTTCGATCG 1188
Query 1321 AAGAAGCTTTTAAAAGGATCAAATGTTTCTATCTTAGACATGCCAAGACTCAATATCCAA 1380
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1189 AAGAAGCTTTTAAAAGGATCAAATGTTTCTATCTTAGACATGCCAAAACTCAATATCCAA 1248
Query 1381 CCATATAGTTGATTTCTGATTTTGGTAT 1408
|| |||||||||||||||||||||||||
Sbjct 1249 CCTTATAGTTGATTTCTGATTTTGGTAT 1276
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58849428525
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5