BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54060.1
Length=1491
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495482 jgi|Araly1|495482|fgenesh2_kg.8__1298__AT5G54060.1 2237 0.0
> Ahg495482 jgi|Araly1|495482|fgenesh2_kg.8__1298__AT5G54060.1
Length=1456
Score = 2237 bits (1211), Expect = 0.0
Identities = 1362/1436 (95%), Gaps = 6/1436 (0%)
Strand=Plus/Plus
Query 54 CCAAGAAAATGGGTGTTTTTGGATCGAATGAATCGTCAAGCATGAGTATTGTGATGTATC 113
|||| |||||||||| ||||||||| || | || ||||||||||| ||||| |||||||
Sbjct 19 CCAAAAAAATGGGTGATTTTGGATCAAACGGTTCCTCAAGCATGAGCATTGTTATGTATC 78
Query 114 CGTGGTTAGCCTTTGGTCACATGACTCCTTTTCTTCACCTATCCAACAAGCTCGCAGAGA 173
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 79 CGTGGTTAGCCTTTGGTCACATGACTCCTTTTCTTCACCTATCAAACAAGCTCGCAGAGA 138
Query 174 AAGGTCACAAGATTGTTTTCTTGCTTCCCAAGAAAGCACTAAACCAGCTTGAACCTCTTA 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 139 AAGGTCACAAGATTGTTTTCTTGCTTCCCAAGAAAGCACTAAACCAGCTTGAACCTCTTA 198
Query 234 ATCTCTACCCAAATCTCATCACTTTCCACACCATCTCTATCCCTCAGGTCAAAGGGCTCC 293
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 199 ATCTCTACCCAAATCTCATCACTTTCCACACCATCTCAATCCCTCAGGTCAAAGGGCTCC 258
Query 294 CTCCGGGTGCGGAGACAAACTCCGACGTCCCTTTCTTCTTGACACATTTGCTTGCAGTTG 353
|||| ||||| || |||||||| |||||||| ||||||||||| ||||| ||||||||||
Sbjct 259 CTCCCGGTGCAGAAACAAACTCTGACGTCCCCTTCTTCTTGACTCATTTACTTGCAGTTG 318
Query 354 CAATGGACCAAACCCGGCCAGAGGTCGAGACCATTTTCCGTACAATCAAACCGGACTTGG 413
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 319 CAATGGACCAAACCCGGCCAGAGGTCGAGACCATTTTCCGTACAATCAAACCGGACTTGA 378
Query 414 TTTTCTATGATTCTGCCCATTGGATACCGGAAATTGCTAAACCGATCGGTGCTAAAACCG 473
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 379 TTTTCTATGATTCTGCCCATTGGATACCGGAAATTGCTAAACCGGTAGGTGCTAAAACCG 438
Query 474 TTTGCTTCAACATCGTTAGCGCTGCGTCAATCGCACTGTCTCTTGTCCCTTCTGCGGAGA 533
||||||||||||| || ||||||||||||||||||||||||||||||||| | || |||
Sbjct 439 TTTGCTTCAACATTGTGAGCGCTGCGTCAATCGCACTGTCTCTTGTCCCTGCAGCCGAGC 498
Query 534 GAGAGGTCATTGATGGCAAGGAAATGTCAGGGGAGGAGTTAGCTAAGACGCCTCTAGGTT 593
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 499 GAGAGGTCATTGATGGGAAGGAAATGTCAGGGGAGGAGTTAGCTAAGACGCCTCTAGGTT 558
Query 594 ACCCATCTTCGAAAGTAGTCTTACGTCCGCACGAAGCAAAATCCCTGAGTTTCGTGTGGA 653
|||| ||||||||||||||||| ||| |||||||||||||| |||| | ||||||||||
Sbjct 559 ACCCGTCTTCGAAAGTAGTCTTGCGTGCGCACGAAGCAAAAGCCCTAAACTTCGTGTGGA 618
Query 654 GGAAGCACGAGGCG-ATTGGCT-CTTTCTTTGATGGGAAAGTTACCGCGATGAGAAACTG 711
|||||||||||| | |||| || |||||||||| ||||||||||||||||||||||||||
Sbjct 619 GGAAGCACGAGG-GTATTG-CTTCTTTCTTTGACGGGAAAGTTACCGCGATGAGAAACTG 676
Query 712 CGACGCAATCGCTATAAGGACTTGCCGTGAGACAGAAGGCAAATTCTGCGATTACATAAG 771
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 677 TGACGCAATCGCTATAAGGACTTGCCGTGAGACAGAAGGCAAATTCTGCGATTACATCAG 736
Query 772 TAGGCAGTACAGTAAACCGGTTTACCTAACAGGACCGGTTCTCCCTGGATCCCAACCTAA 831
||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 737 TAGCCAGTACAGCAAACCGGTTTACCTAACCGGACCGGTTCTCCCTGGATCCCAACCTAA 796
Query 832 TCAGCCCTCCTTAGATCCTCAATGGGCGGAGTGGCTAGCCAAATTCAACCACGGTTCGGT 891
||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 797 TCAGCCCTCCTTAGAGCCTCAATGGGCAGAGTGGCTAGCCAAATTCAACCCCGGTTCGGT 856
Query 892 TGTGTTCTGCGCTTTCGGTAGCCAACCCGTTGTAAACAAGATAGATCAGTTTCAAGAACT 951
||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 857 TGTGTTCTGTGCTTTCGGTAGCCAACCCGTTGTAGACAAGTTAGATCAGTTTCAAGAACT 916
Query 952 CTGTTTAGGTCTAGAATCAACTGGTTTTCCGTTTCTGGTTGCCATTAAGCCTCCTTCGGG 1011
||||||||| ||||| ||||| ||||| |||||||||||||| |||||||||||||||||
Sbjct 917 CTGTTTAGGGCTAGAGTCAACCGGTTTCCCGTTTCTGGTTGCGATTAAGCCTCCTTCGGG 976
Query 1012 TGTATCAACCGTCGAGGAAGCCTTACCGGAAGGATTCAAAGAGAGGGTTCAAGGACGTGG 1071
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 977 TGTATCAACCGTCGAGGAAGCGTTACCGGAAGGATTCAAAGAGAGGGTTCAAGGACGTGG 1036
Query 1072 CGTTGTGTTTGGAGGTTGGATTCAGCAACCGTTGGTGTTGAACCATCCTTCAGTGGGTTG 1131
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CGTTGTGTACGGAGGTTGGATTCAGCAACCGTTGGTGTTGAACCATCCTTCAGTGGGTTG 1096
Query 1132 TTTTGTTAGCCATTGCGGGTTTGGGTCGATGTGGGAGTCGTTGATGAGTGATTGTCAGAT 1191
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1097 TTTTGTTAGCCATTGCGGGTTTGGGTCAATGTGGGAGTCTTTGATGAGTGATTGTCAGAT 1156
Query 1192 CGTTTTGGTTCCGCAGCACGGAGAACAGATTTTGAACGCAAGGCTGATGACGGAGGAGAT 1251
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1157 TGTTTTGGTTCCGCAGCACGGAGAACAGATTTTGAACGCGAGGCTGATGACGGAGGAGAT 1216
Query 1252 GGAGGTGGCGGTTGAAGTGGAGAGGGAAAAGAAAGGGTGGTTCTCGCGGCAAAGCTTGGA 1311
|||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||
Sbjct 1217 GGAGGTGGCGGTTGAAGTGGAGAGGGAAGAGAATGGGTGGTTCTCGCGGCGGAGCTTGGA 1276
Query 1312 GAATGCTGTGAAGAGTGTGATGGAGGAAGGTAGTGAGATCGGTGAGAAAGTGAGGAAGAA 1371
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1277 GAATGCGGTGAAGAGTGTGATGGAGGAAGGTAGTGAGGTCGGTGAGAAAGTGAGGAAGAA 1336
Query 1372 TCATGACAAGTGGAGATGTGTTTTGACTGACTCTGGTTTTTCAGATGGTTATATTGATAA 1431
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1337 TCATGACAAGTGGAGATGTGTTTTGACTGACTCTGGTTTTTCAGATGGTTATATCGATAA 1396
Query 1432 GTTTGAACAA-AATTTAATTGAACTTGTGAAGTCATGAGTTCATTTTAATAATTTC 1486
||||||| || ||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1397 GTTTGAA-AAGAATTTAATTAAACTTGTGAAGTCATGAGTTCATTTTAATGATTTC 1451
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55802208925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5