BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54110.1
Length=1177
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495490 jgi|Araly1|495490|fgenesh2_kg.8__1306__AT5G54110.1 1605 0.0
Ahg907723 jgi|Araly1|907723|Al_scaffold_0002_804 848 0.0
> Ahg495490 jgi|Araly1|495490|fgenesh2_kg.8__1306__AT5G54110.1
Length=1166
Score = 1605 bits (869), Expect = 0.0
Identities = 1083/1179 (92%), Gaps = 43/1179 (4%)
Strand=Plus/Plus
Query 1 CAAAACAAAACGCCATTTTTTGTCGATTCTTCGTCGTCCTCCTTTGAAATTCACACCAAT 60
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1 CAAAAGAAAACGCCATTTTTTGTCGATTCTTCGTCGTCCTTCTTTGAAATTCACACCAAT 60
Query 61 TTGTCTCTCTTCCTAGAGAAACAAAAGATTATTCGAAACTCGGGAAAGTATC--ATCCGG 118
|||||||||||||||||||||| ||||||||||||||||||| |||||| || |||||
Sbjct 61 TTGTCTCTCTTCCTAGAGAAAC-AAAGATTATTCGAAACTCGTGAAAGTTTCTTCTCCGG 119
Query 119 TCACCGGAAAATTGATTATTTCCGATGCCAATAGGTGACCGTCAGAATCCGAGTGTGG-- 176
|||||||||||||||||||||| |||| | | ||||| ||| |||||||||||||
Sbjct 120 TCACCGGAAAATTGATTATTTCTGATGGCGACCGGTGA---TCAAAATCCGAGTGTGGAT 176
Query 177 -AGAAGAAGAAGAACCTCTTCAGGCTATGTCCGTTTTGGCAGA-G-G-AGAAGCACCACT 232
||||||||||||| |||||||||||||||||||||||||||| | | |||||||| |||
Sbjct 177 AAGAAGAAGAAGAATCTCTTCAGGCTATGTCCGTTTTGGCAGAGGAGAAGAAGCACTACT 236
Query 233 TCTTCA------TCTTCAACACAGAATCCAAACCAAAACTACCGTAGCCGCCATGGAAAT 286
|||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 237 TCTTCATCTTCGTCTTCAACACAGAATCCAAGCCAAAACTACCGTAGCCGCCATGGACAT 296
Query 287 CGGAATACAGATATTTCCGCCGTCTCTAAGCC-TCCGTTGACTATGTCTTCCGTCGCCAG 345
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||| || ||
Sbjct 297 CGGAATACAGATATTTCCGCCGTCTCTAAGCCTTCC-TTGACTATGTCTTCCGTTGCGAG 355
Query 346 ATCACTTCTTCCAGCTCGCCGTCGTCTCCGACTAGATCCTTCTAGTTATCTGTATTTCCC 405
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 356 ATCACTTCTTCCAGCTCGCCGTCGTCTCCGACTAGATCCTTCAAGTTATCTGTATTTCCC 415
Query 406 TTATGAACCTGGAAAACAAGTTCGCAGCGCAATAAAGCTTAAGAACACTAGCAAATCTCA 465
|||||||||||| |||||||| || |||||||| ||||||||||| ||||||||||||||
Sbjct 416 TTATGAACCTGGTAAACAAGTGCGTAGCGCAATCAAGCTTAAGAATACTAGCAAATCTCA 475
Query 466 TACTGCATTTAAGTTCCAAACAACGGCACCTAAGAGTTGTTATATGCGTCCTCCCGGAGG 525
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 476 TACTGCATTCAAGTTCCAAACAACGGCACCTAAAAGTTGTTATATGCGTCCTCCCGGTGG 535
Query 526 TGTTTTGGCTCCAGGAGAGAGTGTTTTTGCTACTGTGTTCAAGTTTGTGGAACATCCAGA 585
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 536 TGTTTTGGCTCCCGGAGAGAGTGTTTTTGCTACTGTTTTCAAGTTTGTGGAACATCCAGA 595
Query 586 GAACAATGAAAAGCAGCCGTTGAATCAGAAGAGCAAGGTTAAGTTTAAGATTATGAGCCT 645
|||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 596 GAACAATGAAAAACAGAAGTTGAACCAGAAGAGCAAGGTTAAGTTTAAGATTATGAGCCT 655
Query 646 GAAAGTTAAACCAGGAGTAGAGTATGTGCCTGAGTTGTTTGATGAGCAAAAGGATCAAGT 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 GAAAGTTAAACCAGGAGTAGAGTATGTGCCTGAGTTGTTTGATGAGCAAAAGGATCAAGT 715
Query 706 AGCAGTGGAGCAGGTTCTTCGGGTCATTTTTATTGATGCGGACCGCCCAAGTGCTGCATT 765
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 716 AGCAGTGGAGCAGGTTCTTCGGGTCATTTTTATTGATGCGGACCGCCCGAGTGCTGCATT 775
Query 766 GGAGAAACTGAAACGTCAATTGGATGAAGCTGAAGCTGCAGTTGAAGCAAGAAAGAAGCC 825
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 GGAGAAACTAAAACGTCAATTGGATGAAGCTGAAGCTGCAGTTGAAGCAAGAAAGAAGCC 835
Query 826 TCCCCCAGAGACAGGGCCTCGAGTTGTCGGGGAGGGTCTTGTCATAGACGAATGGAAGGA 885
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 836 TCCCCCAGAGACAGGGCCTCGAGTGGTCGGGGAGGGTCTTGTCATAGACGAATGGAAGGA 895
Query 886 GAGAAGAGAGAAGTACCTTGCTCGGCAACAAGTCGAATCCGTAGATTCTTTGTCCTAAA- 944
||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||
Sbjct 896 GAGAAGAGAGAAGTACCTTGCTCGGCAACAAGTCGAAGCTATAGATTCTTCGTCCTAAAA 955
Query 945 CGCAGAGAGCAATGTGGACTTGTTCT--GC--A--G---A--TCATGTACATAATTTATT 993
|||||||||||||||||| ||||| | || | | | | ||||||||||||||||
Sbjct 956 CGCAGAGAGCAATGTGGATTTGTTATAAGCTTATAGCTGAGGTGATGTACATAATTTATT 1015
Query 994 ATCCCTCGATTATGTATTTATCTCTAGACGATT---ACTTTGTGGTTCTTGTATGTCTCT 1050
||| ||||||||| |||||||||||| ||||||| ||| ||||||||||||
Sbjct 1016 ATCTCTCGATTAT--------CTCTAGACGATTTGTACTTTGTTGTTTTTGTATGTCTCT 1067
Query 1051 GTTTGTTGTGTGATTCATGCCGGTTTTTTCTCCTTCATCAAATTTTGTTTCGGTCGTTTT 1110
||||||||||||||||| || ||||| ||||||||||||||| ||||||||||||||||
Sbjct 1068 GTTTGTTGTGTGATTCACGCTGGTTTGTTCTCCTTCATCAAAATTTGTTTCGGTCGTTTG 1127
Query 1111 TAGTTGATCTAGAATCGAACCAGAGTTTGTTCAGTATTT 1149
||||||||||||||| |||||| | ||||||||||||||
Sbjct 1128 TAGTTGATCTAGAATGGAACCAAAATTTGTTCAGTATTT 1166
> Ahg907723 jgi|Araly1|907723|Al_scaffold_0002_804
Length=7431
Score = 848 bits (459), Expect = 0.0
Identities = 524/553 (95%), Gaps = 13/553 (2%)
Strand=Plus/Plus
Query 177 AGAAGAAGAAGAACCTCTTCAGGCTATGTCCGTTTTGGCAGAGGAGAAGCACCACTTCTT 236
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1985 AGAAGAAGAAGAATCTCTTCAGGCTATGTCCGTTTTGGCAGAGGAGAAGCACCACTTCTT 2044
Query 237 CA------TCTTCAACACAGAATCCAAACCAAAACTACCGTAGCCGCCATGGAAATCGGA 290
|| |||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 2045 CATCTTCGTCTTCAACACAGGATCCAAACCAAAACTACCGTAGCCGCCATGGACATCGGA 2104
Query 291 ATACAGATATTTCCGCCGTCTCTAAGCC-TCCGTTGACTATGTCTTCCGTCGCCAGATCA 349
||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||
Sbjct 2105 ATACAGATATTTCCGCCGTCTCTAAACCTTCC-TTGACTATGTCTTCCGTCGCCAGATCA 2163
Query 350 CTTCTTCCAGCTCGCCGTCGTCTCCGACTAGATCCTTCTAGTTATCTGTATTTCCCTTAT 409
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 2164 CTTCTTCCAGCTCGCCGTCGTCTTCGACTAGATCCTTCAAGTTATCTGTATTTCCCTTAT 2223
Query 410 GAACCTGGAAAACAAGT-TCGCAGCGCAATAAAGCTTAAGAACACTAGCAAATCTCATAC 468
|||||||| |||||||| | | |||||||| ||||||||||| |||||||||||||||||
Sbjct 2224 GAACCTGGTAAACAAGTGT-GTAGCGCAATCAAGCTTAAGAATACTAGCAAATCTCATAC 2282
Query 469 TGCATTTAAGTTCCAAACAACGGCACCTAAGAGTTGTTATATGCGTCCTCCCGGAGGTGT 528
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2283 TGCATTCAAGTTCCAAACAACGGCACCTAAGAGTTGTTATATGCGTCCTCCCGGAGGTGT 2342
Query 529 TTTGGCTCCAGGAGAGAGTGTTTTTGCTACTGTGTTCAAGTTTGTGGAACATCCAGAGAA 588
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2343 TTTGGCTCCAGGAGAGAGTGTTTTTGCTACTGTTTTCAAGTTTGTGGAACATCCAGAGAA 2402
Query 589 CAATGAAAAGCAGCCGTTGAATCA-GAAGAGCAAGGTTAAGTTTAAGATTATGAGCCTGA 647
||||||||| ||| |||||| || ||||||||||||||||||||||||||| |||||||
Sbjct 2403 CAATGAAAAACAGAAGTTGAA-CAAGAAGAGCAAGGTTAAGTTTAAGATTATTAGCCTGA 2461
Query 648 AAGTTAAACCAGGAGTAGAGTATGTGCCTGAGTTGTTTGATGAGCAAAAGGATCAAGTAG 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2462 AAGTTAAACCAGGAGTAGAGTATGTGCCTGAGTTGTTTGATGAGCAAAAGGATCAAGTAG 2521
Query 708 CAGTGGAG-CAGG 719
|||||||| ||||
Sbjct 2522 CAGTGGAGACAGG 2534
Score = 84.2 bits (45), Expect = 2e-15
Identities = 47/48 (98%), Gaps = 0/48 (0%)
Strand=Plus/Plus
Query 833 GAGACAGGGCCTCGAGTTGTCGGGGAGGGTCTTGTCATAGACGAATGG 880
||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2527 GAGACAGGGCCTCGAGTGGTCGGGGAGGGTCTTGTCATAGACGAATGG 2574
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43917600384
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5