BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G54130.2 Length=1936 Score E Sequences producing significant alignments: (Bits) Value Ahg495493 jgi|Araly1|495493|fgenesh2_kg.8__1309__AT5G54130.2 2540 0.0 > Ahg495493 jgi|Araly1|495493|fgenesh2_kg.8__1309__AT5G54130.2 Length=1754 Score = 2540 bits (1375), Expect = 0.0 Identities = 1610/1716 (94%), Gaps = 45/1716 (3%) Strand=Plus/Plus Query 118 TTAGTTTCTAATTTTGGG-TTAA-AAGAAATTCGGGTTTCAATTAATTCGAAAGAGCGGT 175 |||||||||||||||||| |||| ||| ||||| || |||||||||||||||| Sbjct 78 TTAGTTTCTAATTTTGGGTTTAATTTTTGTTTC-GGTTT-AAAGAATTCGAAAGAGCGGT 135 Query 176 CACGACGTTTCTTAGAGAATCGTCTTCTTCATCTTCTTCGTGAACtttttgttttctcct 235 ||||||||||| |||||||||||| ||||| ||||||||| | ||||||| |||||| Sbjct 136 CACGACGTTTCATAGAGAATCGTCATCTTCTTCTTCTTCG-G----TTTTGTTCTCTCCT 190 Query 236 ttttttgattttcaccgccggagatttttgtatttttCCGATTATTCGCCGGCGGTTTAG 295 ||||||||||||||||||| | || | | |||| ||||||||||||||||||| Sbjct 191 TTTTTTGATTTTCACCGCC-G-GA-----G-A-TTTT----TTATTCGCCGGCGGTTTAG 237 Query 296 AGATAATGAAGGGGAGGATATCAAAAATAGGAAGCTATGCAATCTCGTCTTCCATTAGAG 355 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 238 AGATAATGAAGGGGAGGATATCAAAAATAGGAAGCTATGCAATCTCATCTTCCATTAGAG 297 Query 356 ATCAGCAT---CAGCAACCTTGTATTTCTTGTACTACTTTCAATATCCTTGCTCCGATCT 412 |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 298 ATCAACATCAGCAGCAACCTTGTATTTCTTGTACTACTTTCAATATCCTTGCTCCGATCT 357 Query 413 ATAAACGTCTCTCTCACAAGGATCAAAGTCTTCGTGAAAGTGATAATCGAGCGTATTGGC 472 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 358 ATAAACGTCTCTCTCACAAGGATCAAAGTCTTCGTGAAAGCGATAATCGAGCGTATTGGC 417 Query 473 TTGGAAGGAATCATCGAATCATTGATTGGTTATTGTATGAGAGATCTTCAATCATATGTT 532 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 418 TTGGAAGGAATCATAGAATCCTTGATTGGTTATTGTATGAGAGATCTTCAATCATATGTT 477 Query 533 TACAGGAGTTTTGGGTAGGCAATGAAGAGCTTGTTAATTTGTACGAGAAGAGACTTGGAG 592 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||| | Sbjct 478 TACAGGAGTTTTGGGTAGGCAATGAAGAGCTTGTTAATTTATATGAGAAGAGACTTGGTG 537 Query 593 ACGCTGGTTATCTAAGTTACAAGCTTGGTCGTACTAATAATCGTGGTGATGGTTTGCTTA 652 ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 538 ACGCTGGTTATTTAAGTTACAAGCTTGGTCGTACTAATAATCGTGGTGATGGTCTGCTTA 597 Query 653 CGGCTGTTCATAAGGACTATTTTAGAGTTGTGAACTCGAGGGATTTGCTTTTTAATGATT 712 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 598 CGGCTGTTCATAAGGACTATTTTAGAGTTGTGAACTCGAGGGATTTGCTTTTTAACGATT 657 Query 713 GTGGTGATCGAGTTGCTCAGTTGCTACATGTAGAATTAGTTCCTCCTTACTCTCAGTATG 772 ||||||||||||| || |||||||||||||||||||||||||||||||||||||||| || Sbjct 658 GTGGTGATCGAGTCGCGCAGTTGCTACATGTAGAATTAGTTCCTCCTTACTCTCAGTTTG 717 Query 773 ATGCTCATCAAGAAGTTTTGATTGTGAATACTCATTTGTTGTTTCCTCATGATTCAACAT 832 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 718 ATGCTCATCAAGAAGTTTTGATTGTGAATACTCATTTGTTGTTTCCTCATGATTCAACAC 777 Query 833 TGTCCATAGTAAGATTGCAGCAGGTATATAAGATTCTTCAGTATGTAGAATCTTACCAGA 892 |||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 778 TGTCTATAGTAAGATTGCAGCAGGTGTATAAGATTCTTCAGTATGTAGAATCTTATCAGA 837 Query 893 AGGAAGTTAATCTCAGTCCCATGCCTATTATTCTTTGCGGAGATTGGAACGGAAGTAAGC 952 ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 838 AGGAAGTTAATCTAAGTCCTATGCCTATTATTCTTTGCGGAGATTGGAACGGAAGTAAGC 897 Query 953 GAGGACATGTCTACAAGTTTCTCAGGTCACAGGGTTTTGTGTCGTCTTACGATACTGCTC 1012 |||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 898 GAGGGCATGTCTACAAGTTTCTCAGGTCACAGGGTTTTGTGTCATCTTACGACACTGCTC 957 Query 1013 ATCGGTACACAGACTCAGATGCTCACAAGTGGGTAAGCCACCGGAATCATCGGGGTAACA 1072 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 958 ATCGGTACACAGATTCAGATGCTCACAAGTGGGTAAGCCACCGGAATCATCGGGGTAACA 1017 Query 1073 TATGCGCTGTCGATTTCATATGGCTTTTAAATCCAAATCGGTATAGAAAGCTGCTAAAAA 1132 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1018 TATGCGCTGTCGATTTCATATGGCTTTTAAATCCAAATCGGTATAGAAAGCTGCTAAAAA 1077 Query 1133 CAAGTTGGAGCGAGGCAGTCTTTGGCATGTTCAGGTATCTACTGAGAAGAGCTTCACTAA 1192 ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| Sbjct 1078 CAAGTTGGAGCGAGGCAGTGTTTGGCATGTTCAGGTATCTACTAAGAAGAGCTTCACTAA 1137 Query 1193 CAGCTGAAGATGCTTTTGCTTTTCTAAAAACTGACAATGATGGTGACCACATTACATTCA 1252 ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 1138 CAGCTGAAGATGCTTTTGCTTTTCTGAAAACTGACAATGATGGTGACTACATTACATTCA 1197 Query 1253 TGGGCTTCTGTGAGACTCTTCGGCAGCTCAATCTAACAGGTCACTGTAATGGACTCACGA 1312 ||||||||||||||||||||||||||||||||||||||||||| || |||||||| || | Sbjct 1198 TGGGCTTCTGTGAGACTCTTCGGCAGCTCAATCTAACAGGTCATTGCAATGGACTAACAA 1257 Query 1313 CAAAAGAGATCAAAGATTTGTGGACTCAAGCTGACATTGATGGAAACGGTCTTCTAGATT 1372 |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| Sbjct 1258 CAAAAGAGATCAAAGATTTGTGGATTCAAGCAGACATTGATGGAAACGGTCTTCTAGATT 1317 Query 1373 ATAAGGAGTTTCAGCAAAGAATATGGAACCAAACCTGGTCAGAACAAAGAGATGCAGAGG 1432 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1318 ACAAGGAGTTTCAGCAAAGAATATGGAACCAAACCTGGTCAGAACAAAGAGATGCAGAGG 1377 Query 1433 ACGGAGAAGCAAAAGGTAACCAAGAACAAACCGTTGGATTCAGTGTCAAAAACGCAGTTT 1492 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 1378 ACGGAGAAGCAAAAGGTAACCAAGAACAAACCGTTGGATTCAGTGTCAAGAACGCGGTTC 1437 Query 1493 TGTTTCCTCCTGAAGTTGAAAAAGGAATGTGGCCAGAAAATTACTCTCTATCAGATCACG 1552 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1438 TGTTTCCTCCCGAAGTTGAAAAAGGAATGTGGCCAGAAAATTACTCTCTATCAGATCACG 1497 Query 1553 CGAGACTCACTGTTGTATTCTCACCCATAAGAATGCCTTGCTCTCAATTGGTTTCATGAC 1612 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1498 CGAGACTCACCGTTGTATTCTCACCCATAAGAATGCCTTGCTCTCAATTGGTTTCATGAC 1557 Query 1613 AAAACACACTCACCAAACAAACTTTAGCTTCTTCCATTTTTAAGAGACCTCTGAGTTTTG 1672 |||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1558 AAAA-ACACTGACCAAACAAACTTTAGCTTCTTCCATTTA-AAGAGACCTCTGAGTTTTG 1615 Query 1673 GTGTCCCCTTACAGAGAAACTTCGCTCTGTCTCTCCATTGGATCGGCTTGACCGCTCTCA 1732 |||||||||||||||||| | | | ||||||||||||||| | ||||| Sbjct 1616 GTGTCCCCTTACAGAGAA--T-C-C-----------ATTGGATCGGCTTGAATGATCTCA 1660 Query 1733 CGTTGCGGTTCCTGCGTTGGGTGGGAAGAAGAGAGAAAGGGGGACAT-AGGTCTATAAAT 1791 | |||||||| |||||||||| ||||||||||||||||| || || | |||||||||||| Sbjct 1661 CTTTGCGGTTACTGCGTTGGGGGGGAAGAAGAGAGAAAGAGG-AC-TGAGGTCTATAAAT 1718 Query 1792 TTTTACTGTGTACAAAAACATGTAAACTAAATATAT 1827 |||||||||||||||||||||||||||||||||||| Sbjct 1719 TTTTACTGTGTACAAAAACATGTAAACTAAATATAT 1754 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72752367950 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5