BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G54270.1 Length=1134 Score E Sequences producing significant alignments: (Bits) Value Ahg495512 jgi|Araly1|495512|fgenesh2_kg.8__1328__AT5G54270.1 1932 0.0 Ahg473203 jgi|Araly1|473203|fgenesh2_kg.1__3157__AT1G29910.1 152 5e-36 Ahg473204 jgi|Araly1|473204|fgenesh2_kg.1__3158__AT1G29930.1 139 4e-32 > Ahg495512 jgi|Araly1|495512|fgenesh2_kg.8__1328__AT5G54270.1 Length=1133 Score = 1932 bits (1046), Expect = 0.0 Identities = 1106/1135 (97%), Gaps = 3/1135 (0%) Strand=Plus/Plus Query 1 ATATCCCATCTCTGATTCTCCCACCTCTCTTCTCATCCACAAAATACTAACATAAAAGTC 60 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1 ATATCCCATCTCTGATTCTCCAACCTCTCTTCTCATCCACAAAATACTAACATAAAAGTC 60 Query 61 AAAGTCCCTGAGACCAATACTTTCACcaaacagcaaaacaagaagaacaacaacactaag 120 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 61 AAAGTCCCTGAGACCAATACTTTCACCAAACAGCAAAAGAAGAAGAACAACAACACTAAG 120 Query 121 caaaaaagaaaagctcaagcCGAGAGAGACAATGGCATCAACATTCACGAGCTCAAGCAG 180 ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CAAAAAAAAAAATCTCAAGCCGAGAGAGACAATGGCATCAACATTCACGAGCTCAAGCAG 180 Query 181 TGTTCT-TACCCCAACAACATTCCTTGGCCAGACTAAAGCCTCAAGCTTTAACCCCCTTC 239 |||||| | | || ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 181 TGTTCTGT-CTCCTACAACATTCCTTGGCCAGACTAAAGCCTCAAGCTTTAACCCTCTTC 239 Query 240 GTGATGTTGTCTCTCTCGGATCTCCCAAGTACACTATGGGAAATGATCTTTGGTATGGAC 299 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 240 GTGATGTTGTCTCTCTCGGATCTCCCAAATACACTATGGGAAATGATCTTTGGTATGGAC 299 Query 300 CTGACAGAGTGAAGTACTTAGGACCCTTTTCCGTTCAAACTCCGTCTTACCTCACCGGAG 359 | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 300 CAGACAGAGTGAAGTACTTAGGACCCTTTTCCGTCCAAACTCCGTCTTACCTCACCGGAG 359 Query 360 AATTCCCTGGCGATTATGGTTGGGACACCGCCGGTTTATCCGCAGACCCTGAAGCCTTTG 419 ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 360 AATTCCCCGGCGATTATGGTTGGGACACCGCCGGTTTATCTGCAGACCCTGAAGCCTTTG 419 Query 420 CCAAAAACAGAGCTCTTGAGGTGATCCATGGGAGATGGGCAATGTTGGGAGCTTTTGGTT 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 CCAAAAACAGAGCTCTTGAGGTGATCCATGGGAGATGGGCAATGTTGGGAGCTTTTGGTT 479 Query 480 GCATAACCCCTGAAGTTCTTCAAAAGTGGGTCCGTGTGGACTTCAAAGAACCAGTCTGGT 539 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 GCATAACCCCTGAAGTTCTTCAAAAGTGGGTCCGTGTGGACTTCAAAGAACCAGTCTGGT 539 Query 540 TCAAAGCCGGTTCACAAATCTTCTCCGAAGGCGGTTTGGACTACTTAGGCAACCCAAACC 599 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 TCAAGGCCGGTTCACAAATCTTCTCCGAAGGCGGTTTGGACTACTTAGGCAACCCAAACC 599 Query 600 TAGTCCATGCTCAGAGCATTTTAGCCGTCCTTGGCTTCCAAGTCATCCTCATGGGTTTGG 659 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 600 TAGTCCATGCTCAGAGCATTTTAGCCGTCCTTGGCTTCCAAGTCATCCTCATGGGCTTGG 659 Query 660 TTGAAGGTTTCCGCATCAACGGTCTTGATGGTGTTGGCGAAGGCAACGACTTGTACCCCG 719 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 TTGAAGGTTTCCGCATCAACGGTCTTGATGGTGTTGGCGAAGGCAACGACTTGTACCCCG 719 Query 720 GTGGGCAATACTTTGACCCGTTGGGTCTCGCTGATGATCCAGTTACTTTTGCTGAGCTTA 779 |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| | Sbjct 720 GTGGACAATACTTTGACCCGTTGGGTCTCGCTGATGATCCAGTTACTTTTGCCGAGCTCA 779 Query 780 AGGTGAAAGAGATCAAGAACGGAAGATTGGCTATGTTCTCTATGTTTGGCTTCTTTGTTC 839 ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| Sbjct 780 AGGTGAAAGAGATCAAGAATGGAAGATTGGCTATGTTCTCAATGTTTGGCTTCTTTGTTC 839 Query 840 AAGCCATTGTTACTGGAAAAGGTCCTTTGGAGAATCTCCTTGACCATCTTGACAACCCTG 899 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 840 AAGCCATTGTTACTGGAAAAGGTCCTTTGGAGAATCTCCTTGACCATCTCGACAACCCCG 899 Query 900 TTGCTAACAATGCGTGGGCTTTCGCAACTAAGTTTGCACCTGGAGCTTAAATTTTCAAGT 959 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 900 TTGCTAACAATGCATGGGCTTTCGCAACTAAGTTTGCACCTGGAGCTTAAATTTTTAAGT 959 Query 960 CTTGATGTGATTCTTGTAATGATATGAACATAACCTTTCTTGTTCCTCTCAAATTACAAA 1019 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 960 CTTGATGTGATTCTTGTAATGATATGAACATAACCTTTCTTGTTCCTCTCAAATTACAAA 1019 Query 1020 TCTTCTATTTGCTATGCACAGAAGAAGTCTCAAAAATACATGTCTCTCACAGCTAAATCT 1079 ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1020 TCT-CTATTTGCTATACACAGAAGAAGTCTCAAAAATACATGTCTCTCACAGCTAAATCT 1078 Query 1080 ACAATGCTCTTAATCTAACATTTTGGGATCGTGATACTAATACAAAGCTAAGTGG 1134 |||||||||| |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1079 ACAATGCTCTCAATCTAACATTTTGGGATCGGGATACTAATACAAAGCTAAGTGG 1133 > Ahg473203 jgi|Araly1|473203|fgenesh2_kg.1__3157__AT1G29910.1 Length=1008 Score = 152 bits (82), Expect = 5e-36 Identities = 309/415 (74%), Gaps = 30/415 (7%) Strand=Plus/Plus Query 536 TGGTTCAAAGCCGGTTCACAAATCTTCTCCGAAGGCGGTTTGGACTACTTAGGCAACCCA 595 |||||||| ||||||||||| |||||| ||| || || | || ||||| || ||||| Sbjct 443 TGGTTCAAGGCCGGTTCACAGATCTTCAGCGATGGAGGGCTCGATTACTTGGGAAACCCT 502 Query 596 AACCTAGTCCATGCTCAGAGCATTTTAGCCGTCCTT-GGCTTC-CAAGTCATCCTCATGG 653 | | ||||||| ||||||||||| || | || || ||| | ||||| ||| | |||| Sbjct 503 AGCTTAGTCCACGCTCAGAGCATCTT-GGCG-ATTTGGGCCACTCAAGTTATCTTGATGG 560 Query 654 GTTTGGTTGAAGGTTTCCGCA-TCAAC-GGTCTTGATGG-TGTTGGCGA-AGG-CAACGA 708 | |||||||| | | | | || | || || || |||| || ||| | | || Sbjct 561 GAGCCGTTGAAGGCTACAG-AGTC-GCAGGAAATG--GGCCATTGG-GAGAGGCCGAGGA 615 Query 709 CTTG---TACCCCGGTGGGCAATA-CTTTGACCCGTTGGGTCTCGCTGA-TGATCCAGTT 763 |||| ||||||||| || || ||| ||||| |||||| | ||| | || |||| Sbjct 616 CTTGCTTTACCCCGGT-GG---TAGCTTCGACCCATTGGGTTTGGCT-ACCGACCCAGAG 670 Query 764 ACTTTTGCTGAGCTT-AAGGTGAAAGAGATCAAGAACGGAAGATTGGCTATGTTCTCTAT 822 | || |||||| || |||||||| ||| ||||||||||||||||||||||||||||||| Sbjct 671 GCCTTCGCTGAG-TTGAAGGTGAAGGAGCTCAAGAACGGAAGATTGGCTATGTTCTCTAT 729 Query 823 GTTTGGCTTCTTTGTTCAAGCCATTGTTACTGGAAAAGGTCCTTTGGAGAATCTC-CTTG 881 |||||| ||||| |||||||||||||| ||||| || || || | ||||| || || | Sbjct 730 GTTTGGATTCTTCGTTCAAGCCATTGTCACTGGTAAGGGACCGATAGAGAACCTTGCT-G 788 Query 882 ACCATCTTGACA-ACCCTGTTGCTAACAATGCGTGGGCTTTCGCAACTAAGTTTG 935 ||||| ||| | | || ||| | ||||| || ||||| ||||| || || |||| Sbjct 789 ACCAT-TTGGCCGATCCAGTTACCAACAACGCATGGGCCTTCGCCACCAACTTTG 842 > Ahg473204 jgi|Araly1|473204|fgenesh2_kg.1__3158__AT1G29930.1 Length=1002 Score = 139 bits (75), Expect = 4e-32 Identities = 182/232 (78%), Gaps = 14/232 (6%) Strand=Plus/Plus Query 709 CTTGTACCCCGGTGGGCAATA-CTTTGACCCGTTGGGTCTCGCTGA-TGATCCAGTTACT 766 ||| ||||||||| || || ||| ||||| |||||| | ||| | || |||| | Sbjct 631 CTT-TACCCCGGT-GG---TAGCTTCGACCCATTGGGTTTGGCT-ACCGACCCAGAGGCC 684 Query 767 TTTGCTGAGCTT-AAGGTGAAAGAGATCAAGAACGGAAGATTGGCTATGTTCTCTATGTT 825 || |||||| || |||||||| ||| |||||||||||||||||||||||||||||||||| Sbjct 685 TTCGCTGAG-TTGAAGGTGAAGGAGCTCAAGAACGGAAGATTGGCTATGTTCTCTATGTT 743 Query 826 TGGCTTCTTTGTTCAAGCCATTGTTACTGGAAAAGGTCCTTTGGAGAATCTC-CTTGACC 884 ||| ||||| |||||||||||||| ||||| || || || | ||||| || || |||| Sbjct 744 TGGATTCTTCGTTCAAGCCATTGTCACTGGTAAGGGACCGATAGAGAACCTTGCT-GACC 802 Query 885 ATCTTGACA-ACCCTGTTGCTAACAATGCGTGGGCTTTCGCAACTAAGTTTG 935 || ||| | | || ||| | ||||| || ||||| ||||| || || |||| Sbjct 803 AT-TTGGCCGATCCAGTTACCAACAACGCATGGGCCTTCGCCACCAACTTTG 853 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42278314953 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5