BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G54290.2 Length=1182 Score E Sequences producing significant alignments: (Bits) Value Ahg495514 jgi|Araly1|495514|fgenesh2_kg.8__1330__AT5G54290.1 1650 0.0 > Ahg495514 jgi|Araly1|495514|fgenesh2_kg.8__1330__AT5G54290.1 Length=1181 Score = 1650 bits (893), Expect = 0.0 Identities = 1089/1179 (92%), Gaps = 32/1179 (3%) Strand=Plus/Plus Query 7 AAGACTGTGAAGCGAGAGGACCGTTAAGACGACGGACGCTTATCTGGAAGGAGAGTCATG 66 |||||||||||||||||| |||||| ||||||||||| ||||||| |||||| |||| Sbjct 1 AAGACTGTGAAGCGAGAGAACCGTT-AGACGACGGACACTTATCT----GGAGAGCCATG 55 Query 67 AATCTGAGTGTGAACCGATGCATCACCGGTGGTTTCGTCGGTGGATTCTCTAGCTGCAGA 126 ||||| ||||||||||||||||||| | |||||||||||| ||||||||| Sbjct 56 AATCTAAGTGTGAACCGATGCATCA----------C--CGGTGGATTCTCGAGCTGCAGA 103 Query 127 CTCAATCATGGTAAGAAAAGGTGGGTTCGTGCTGGCAAGCACTGTGAGCTTG-AGAGGGA 185 |||||||| | ||||||| ||||||||||||| |||| | ||||||| || |||| || Sbjct 104 CTCAATCA-AG--AGAAAAGATGGGTTCGTGCTGCCAAGAATTGTGAGC-TGCAGAGAGA 159 Query 186 GAGAAGTTTAGTGTCTGATGCTGTTTCTTTAGAGAGGTTAGAGAGCAAAAGCATTAAACT 245 || ||||||||||||||||| ||||| ||| ||||| |||||||||||| || ||||| Sbjct 160 GACAAGTTTAGTGTCTGATGTTGTTTGTTTTCAGAGGAAAGAGAGCAAAAGTATGAAACT 219 Query 246 TGCGATGCTTGCTAGTGGTTTAGGAGTGGCGAACTTGGTAACTCTTAGCTCAGCAAAAGC 305 || ||||||||||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct 220 TGTGATGCTTGCTAGTGGTTTAGGAGTGGCAAACTTGGTAACTCTTAGCTCAGCAAAGGC 279 Query 306 CGCAGACTTGAAGATGATTGTCTTGGATCAAGCCACTTCCATTTACATCTTGGCTGAAGG 365 |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| Sbjct 280 CGCAGACTTGAAGATGATTGTCTTGGATCAAGCCACTTCCCTTTACATTTTGGCTGAAGG 339 Query 366 AAGCCTTGGAGATTCGGTCGGGAACTTCTTGTATTCAGCTAACCAACAGGCTAACGAAGC 425 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 340 AAGCCTTGGTGATTCGGTCGGGAACTTCTTGTATTCAGCTAACCAACAGGCTAACGAAGC 399 Query 426 TGTTCAAGATCAACTATCAGCACTCAGTGTAACAAGTTTGGCAGTAATATTTGGGGCAGG 485 |||||| ||||| || ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 400 TGTTCAGGATCAGCTTTCAGCTCTCAGTGTAACAAGTTTGGCAGTAATATTTGGGGCAGG 459 Query 486 CCTTGTGACAAGTCTGTCTCCATGTACACTTAGTGTTTTGCCGTTGACACTTGGTTATAT 545 ||||||||||||| |||||||||||||||| |||||| |||| ||||||||||| ||||| Sbjct 460 CCTTGTGACAAGTTTGTCTCCATGTACACTAAGTGTTCTGCCTTTGACACTTGGCTATAT 519 Query 546 TGGTGCATTTGGGTCTGGCAAAAGCAGAGGTCAGGTTATTGGAGATACAGTTGCTTTCGC 605 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 520 TGGTGCATTTGGGTCTGGCAAAAGCAGAGGGCAGGTTATTGGAGATACAGTTGCTTTCGC 579 Query 606 ACTGGGATTAGCAACTACCTTAGCCCTTCTTGGGATAGTAGCTTCTTTTGCCGGAAAAGC 665 |||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||| Sbjct 580 ACTGGGATTAGCAACTACCTTAGCACTTCTTGGTATAGTAGCCTCTTTTGCCGGAAAAGC 639 Query 666 CTATGGACAAATAGGACAAGGATTACCAGTAGCTGCATCCGGTCTGGCTATTGTAATGGG 725 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 640 CTATGGACAAATAGGACAAGGGTTACCAGTAGCTGCATCCGGTCTGGCTATTGTAATGGG 699 Query 726 TCTCAATCTCCTTGAGATAATCGAACTTCAGCTTCCTTCTTTCTTTAACAACTTTGATCC 785 | | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 700 TTTTAATCTCCTTGAGATAATCGAACTTCAGCTTCCATCTTTCTTTAACAACTTTGATCC 759 Query 786 TCGTGCTGCAGCAGCAAACTTCCCATCTAGTGTACAAGCATATCTAGCCGGTCTCACATT 845 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 760 TCGTGCTGCAGCAGCAAACTTCCCATCTAGTGTACAAGCGTATCTAGCCGGTCTCACATT 819 Query 846 CGCACTTGCTGCCTCACCTTGTAGTACTCCAGTTCTAGCCACTCTTCTTGGTTACGTGGC 905 |||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 820 CGCACTAGCTGCCTCACCTTGTAGTACTCCAGTTCTAGCCACCCTTCTTGGCTACGTGGC 879 Query 906 TACTTCCAGGGATCCAGTAATTGGTGGAAGCTTACTCTTAACCTATACAACAGGTTACGT 965 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 880 TACTTCCAGGGATCCAGTAATTGGTGGTAGCTTACTCTTAACCTATACAACAGGTTACGT 939 Query 966 CGCTCCACTTATCGTCGCTGCTTCTTTTGCCGGAGCTTTACAGAGCTTACTTTCGTTGCG 1025 |||||||| ||||| ||||||||||| |||||||||||||||||||||||||| ||||| Sbjct 940 TGCTCCACTCATCGTGGCTGCTTCTTTCGCCGGAGCTTTACAGAGCTTACTTTCCTTGCG 999 Query 1026 AAAGGTCTCTGCATGGATCAATCCCATAAGTGGTGCTCTTCTACTTGGAGGAGGTTTATA 1085 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1000 AAAGGTCTCTGCATGGATCAACCCCATAAGTGGTGCTCTTCTACTTGGAGGAGGTTTATA 1059 Query 1086 TACTTTCTTGGATAGGCTTTTTCCTGCTGCTACTATGGTCATGTAAAAACTTAACTTACA 1145 |||||||||||||||||||||||||||||| |||||||||||||||||| | || ||| Sbjct 1060 TACTTTCTTGGATAGGCTTTTTCCTGCTGCAACTATGGTCATGTAAAAA---A-CT-ACA 1114 Query 1146 A-ACTCATTTCGGCCAAAAA---CAAAG-TGTTTGTAAT 1179 ||||||||| |||||||| |||| |||||||||| Sbjct 1115 TTACTCATTTCTGCCAAAAAAAACAAAAATGTTTGTAAT 1153 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44108214969 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5