BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54470.1
Length=1085
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495528 jgi|Araly1|495528|fgenesh2_kg.8__1344__AT5G54470.1 1009 0.0
> Ahg495528 jgi|Araly1|495528|fgenesh2_kg.8__1344__AT5G54470.1
Length=846
Score = 1009 bits (546), Expect = 0.0
Identities = 785/891 (88%), Gaps = 53/891 (6%)
Strand=Plus/Plus
Query 1 ATTACGCTGTCTCTTATTCGTGTCCGCAGAAGAAACgagag-a-agagagagaAGCAAAA 58
||| |||||||||||||| |||||||||||||||||||||| | |||||||||||| |||
Sbjct 1 ATTTCGCTGTCTCTTATTTGTGTCCGCAGAAGAAACGAGAGAAGAGAGAGAGAAGC-AAA 59
Query 59 GACCTTACCAAGAATATTTATAACACACAAACATCTagagacagagatagacatagagag 118
| ||||||||||||||||||| | ||||||||||| ||| |||| || ||||||
Sbjct 60 GTCCTTACCAAGAATATTTAT-A-ACACAAACATC--GAG--AGAG--AG----AGAGAG 107
Query 119 agagCTTGTGGTTGTGGTTGTGCGAGATAATATCTAGAGATGGGGAAGAAGAAGTGCGAG 178
|||| | ||||||||||||| ||||||| ||| | |||||||||||||||||||||
Sbjct 108 AGAG--AGAGGTTGTGGTTGTG-GAGATAAGATC---A-ATGGGGAAGAAGAAGTGCGAG 160
Query 179 TTATGTTGTGGTGTAGCGAGAATGTATTGTGAGTCAGATCAAGCGAGTTTATGTTGGGAT 238
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 161 TTATGTTGTGGAGTAGCGAGAATGTATTGTGAGTCAGATCAAGCGAGTTTATGTTGGGAT 220
Query 239 TGTGACGGTAAAGTTCACGGAGCTAATTTTCTGGTGGCGAAACACATGCGTTGTCTTCTA 298
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 221 TGTGACGGTAAAGTTCACGGAGCTAATTTTCTGGTGGCGAAACACACGCGTTGTCTTCTT 280
Query 299 TGTAGCGCGTGTCAGTCACACACGCCTTGGAAAGCTTCTGGGCTGAATCTTGGCCCAACT 358
|||||||||||||||||||||||| |||||||||||||||| || |||||||||||||
Sbjct 281 TGTAGCGCGTGTCAGTCACACACGTCTTGGAAAGCTTCTGGCCTTCGTCTTGGCCCAACT 340
Query 359 GTTTCTATCTGTGAGTCTTGTTTAGCTCGTAAGAAGAATAACAACAGCTCCCTCGCCGGG 418
|||||||||||||| |||||||||||||||||||||||| ||||||||| || || ||
Sbjct 341 GTTTCTATCTGTGACTCTTGTTTAGCTCGTAAGAAGAAT---AACAGCTCCGTCACC-GG 396
Query 419 AGGGA-TCAGAATCTTAACCAAGAAGAAGAGATCATTGGTTGTA-ACGACG--GA-GCTG 473
| ||| ||||||||| |||| |||||||||||||| || | | | || | || ||||
Sbjct 397 AAGGAGTCAGAATCTGAACC---AAGAAGAGATCATTAGTAG-AGAAGATGATGATGCTG 452
Query 474 AGTCTTATGATGAGGAAAGCGATGAGGATGAAGAAGAAGAAGAAGTGGAGAATCAGGTTG 533
| |||||||||||||||||| ||| | || ||||||||||||||||||||||
Sbjct 453 AATCTTATGATGAGGAAAGC------GAT---G-AG--GAAGAAGTGGAGAATCAGGTTG 500
Query 534 TTCCGGCTGCGGTGGAGCAAGAACTTCCGGTGGTGAGTTCGTCGTCTTCGGTTAGTAGTG 593
| ||||| ||||| | | ||||||||||||||||||||||||||||||||||||||| |
Sbjct 501 TGCCGGCGGCGGTAGCGGAAGAACTTCCGGTGGTGAGTTCGTCGTCTTCGGTTAGTAACG 560
Query 594 GTGAAGGAGATCAGGTGGTGAAAAGGACGAGACTTGATTTGGATCTTAACCTCTCCGATG 653
| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 GCGACGGAGATGTGGTGGTGAAAAGGACGAGACTTGATTTGGATCTTAACCTCTCCGATG 620
Query 654 AGGAGAACCAATCTAGACCATTGAAAAGATTATCGAGAGACGAAGGTTTGTCAAGATCAA 713
|||||||| ||||| |||| ||||||||||||||||||||||||| |||||||| |||||
Sbjct 621 AGGAGAACGAATCTCGACCGTTGAAAAGATTATCGAGAGACGAAGCTTTGTCAAAATCAA 680
Query 714 CTGTTGTGATGAATAGCTCAATCGTGAAATTACACGGAGGGAGGAGAAAAGCAGAGGGAT 773
| ||||||||||| |||||| | |||| |||||||||||||||||||| |||||||||
Sbjct 681 CGGTTGTGATGAA---CTCAATTGAGAAAGTACACGGAGGGAGGAGAAAATCAGAGGGAT 737
Query 774 GTGATACATCATCGTCGTCTTCGTTTTATTGAAATCGCCAAGGAAAGTAGAGATTGT-AG 832
||||||||||||| |||||||| |||||||||||||||||| |||||||||||| | ||
Sbjct 738 GTGATACATCATCATCGTCTTCATTTTATTGAAATCGCCAACAAAAGTAGAGATTTTTAG 797
Query 833 CCGTTGATGATTCTTTTGTTTGGTTGATTAGATTAATCCTCATCGTTCATT 883
|||||||||||||||| ||| ||||||| |||||||| |||| ||||||||
Sbjct 798 CCGTTGATGATTCTTTCGTT-GGTTGAT-AGATTAATTCTCACCGTTCATT 846
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40410292020
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5