BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54585.1
Length=730
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495538 jgi|Araly1|495538|fgenesh2_kg.8__1354__AT5G54585.1 743 0.0
> Ahg495538 jgi|Araly1|495538|fgenesh2_kg.8__1354__AT5G54585.1
Length=607
Score = 743 bits (402), Expect = 0.0
Identities = 504/552 (91%), Gaps = 11/552 (2%)
Strand=Plus/Plus
Query 108 ATAAAAGGAAGAGAAGTGATCAGGTGTGGTGACGAGTAGGATATGAAATTCTTGTTGGAA 167
|||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||
Sbjct 6 ATAAAAGGAAGAGAAGTGATCAGGTGTGGTAACGTGTAGGATATGAAATACTTGTTGGAG 65
Query 168 CTCGTCGTGCCTTGTTTTGGTTCACAACAGTTCCAAGAATCCGCCGCAAGTACTGCGGAT 227
||||||||||||||||||||||| ||||||||||||||||||||||| | || || ||
Sbjct 66 CTCGTCGTGCCTTGTTTTGGTTCGCAACAGTTCCAAGAATCCGCCGC-A--ACCGCAGAA 122
Query 228 GATTCGGTTTCTGACGAAACACAAACGCTGATGAAACAACGGAGGCGACGGAAACGCGTT 287
||||||||||| |||||||| |||||||| |||||||| |||||||||||||||||||||
Sbjct 123 GATTCGGTTTCAGACGAAACGCAAACGCTAATGAAACAGCGGAGGCGACGGAAACGCGTT 182
Query 288 AGAGTGGCTGGTCAACCTGGACAAGTGGCAGAGTGGAGACCGTCTCTTAGCGTTATCTCC 347
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 183 AGAGTGGCTGGTCAACCTGGACAAGTGGCAGAGTGGAGACCGTCACTTAGCGTTATCTCT 242
Query 348 GAGAACAAGCCGGCGATAACgaagatatcagaaaagaacgaagaaaagaagaaagtccgt 407
|||||||| ||||| |||||||||||||| |||||| ||||||||||||||||||| |||
Sbjct 243 GAGAACAAACCGGCAATAACGAAGATATCGGAAAAGGACGAAGAAAAGAAGAAAGTTCGT 302
Query 408 cggaaaagtgaagGCAACGGCGGCGGAGACGCATCATCACGGTCCGGTGGTGGTCATATT 467
|||||||||||||||||||||||||| ||||| || || | ||||| ||||||||| ||
Sbjct 303 CGGAAAAGTGAAGGCAACGGCGGCGGTGACGCGTCGTCGCTATCCGGCGGTGGTCATGTT 362
Query 468 CGTTTCCGTAGTGACGATTTCGGGAGAAATGCTTTCGAACCGGTGATTCCGGCATTCTCG 527
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 363 CGTTTCTGTAGTGACGATTTCGGGAGAAATGCTTTTGAACCGGTGATTCCGGCATTCTCA 422
Query 528 CCGACTCCGTTCATGTTTTGAGTTTAAGTTTCTGGTGAAGTTTATGTGTATA-A-TATAT 585
||||||||||||||||||||||||||||||| ||||||| |||||||||||| | |||||
Sbjct 423 CCGACTCCGTTCATGTTTTGAGTTTAAGTTTGTGGTGAAATTTATGTGTATATACTATAT 482
Query 586 -TG-AT-AA-A--TATGTTATTGTTAATGGAAAGATGTAGCATTAATGTATATACTTCTT 639
| || || | ||||||| |||||||||||||||||| |||||||||||||| |||||
Sbjct 483 ATATATTAATAAATATGTTAATGTTAATGGAAAGATGTATCATTAATGTATATATTTCTT 542
Query 640 TGATTTTACTAC 651
|||| |||||||
Sbjct 543 TGATATTACTAC 554
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26876656485
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5